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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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o real fresh water flux implemented with non-linear free-surface. |
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chkpt44c_pre,post |
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o few fix (mask in shap_s2, EmPmR in external_field_load, |
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USE_NATURAL_BCS in solve_for_P); |
| 11 |
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o add arguments myIter & myTime to S/R obcs_calc & solve_for_P |
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checkpoint44b_pre/_post |
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o merge of relevant stuff from the ecco-branch: |
| 15 |
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- genmake: removed $S64 overwrite for case SunOS |
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- pkg/exf: update and corrections for field swapping and obcs |
| 17 |
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- pkg/ecco: parameter lists for the_model_main, the_main_loop |
| 18 |
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harmonized between ECCO and MITgcm |
| 19 |
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- pkg/autodiff: added flow directives for obcs, mdsio_gl_slice |
| 20 |
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updated checkpointing_lev... lists for obcs |
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- model/src: minor changes in forward_step, plot_field |
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added directive for divided adjoint in the_main_loop |
| 23 |
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- pkg/mdsio: added mdsio_gl_slice |
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o check parameters & config (chkpt44a_pre,post) |
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o OBC and NonLin_FrSurf. |
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checkpoint44 |
| 29 |
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o fix bug in mom_vi_del2uv |
| 30 |
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o select when filters are applied ; add options to zonal_filter (data.zonfilt) |
| 31 |
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o gmredi: fix Pb in the adiabatic form ; add options (.e.g. Bolus advection) |
| 32 |
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o update AIM experiments (NCEP input files) |
| 33 |
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o improve and extend diagnostics (Monitor, TimeAve with NonLin-FrSurf) |
| 34 |
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o added some stuff for AD |
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| 36 |
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checkpoint43 |
| 37 |
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o added two new advection tests |
| 38 |
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o added global 4x4 degree ocean test |
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o added test of H&S94 with free surface on cube |
| 40 |
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o some final mods for gradient check, adjoint,... |
| 41 |
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| 42 |
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checkpoint42 |
| 43 |
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Fixed AD-related problems: |
| 44 |
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o Store directives up-to-date with re-arranged Adams-Bashforth |
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(mainly thermodynamics.F) |
| 46 |
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o New store directives for multi-dim. advection schemes |
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* new CPP flag ALLOW_MULTI_DIM_ADVECTION |
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* new common block and key passkey |
| 49 |
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(mainly gad_advection.F) |
| 50 |
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o Modified store directives for split of dynamics/thermodynamics |
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for the case ALLOW_KPP |
| 52 |
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o Cleaned argument list for timestep_tracer.F |
| 53 |
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| 54 |
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checkpoint41 |
| 55 |
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o re-formatted/added comments in prologues of key subroutines |
| 56 |
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to work with protex |
| 57 |
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| 58 |
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checkpoint40 |
| 59 |
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o moved calc_gs, calc_gt and calc_tr1 back to model/src |
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o added FLT (floats) package from Arne along with demo. experiment |
| 61 |
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o re-arranged Adams-Bashforth scheme for tracers to allow easier |
| 62 |
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implementation of forward-in-time forcing terms |
| 63 |
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o more mods for non-linear free-surface including new variable |
| 64 |
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o modified multi-dim method to work on cube |
| 65 |
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o bug fix in KPP (from DM) |
| 66 |
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| 67 |
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checkpoint40pre9 |
| 68 |
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o added DST advection schemes |
| 69 |
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o fix MPI bug on SGI's |
| 70 |
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o modifications for non-linear free-surface |
| 71 |
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o fixed conditionals for fixed flow/passive tracer only mode |
| 72 |
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o added tension/strain form of stress tensor |
| 73 |
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o changes to commenting of arguments for TAF/TAMC |
| 74 |
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o added/updated many matlab scripts |
| 75 |
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o added multi-dimensional advection method for tracers |
| 76 |
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| 77 |
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checkpoint40pre8 |
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o new package rw/ |
| 79 |
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Added method for dumping intermediate local arrays: |
| 80 |
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mdsio_writetile - same as mdsio_writefield except works from inside |
| 81 |
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bi,bj loop |
| 82 |
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mdsio_writelocal - same as mdsio_writetile except works for local |
| 83 |
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arrays |
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write_local_r? - higher-level wrapper for mdsio_writelocal |
| 85 |
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Controlled by diagFreq. Defaults to zero (ie. no dumps) |
| 86 |
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Example given at end of mom_vecinv.F that dumps some local arrays. |
| 87 |
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o replaced calc_mom_rhs.F by mom_fluxform.F/mom_vecinc.F to |
| 88 |
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control flux-form versus vector invariant code. |
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Switch is runtime flag vectorInvariantMomentum (defaults to false) |
| 90 |
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or genmake -DISABLE ... |
| 91 |
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o TAMC-related update to cope with mom_fluxform.F/mom_vecinc.F |
| 92 |
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(additional storing is now needed for case vecinv; |
| 93 |
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currently nothing implemented to switch this storing off |
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in case fluxform is used since no CPP flag available). |
| 95 |
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| 96 |
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checkpoint40pre7 |
| 97 |
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o bug fix in dynamics.F |
| 98 |
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calc_viscosity called before k=1,Nr loop. |
| 99 |
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o added some #ifdef's ALLOW_PASSIVE_TRACER |
| 100 |
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o cleaned initialisations in ctrl_map_ini |
| 101 |
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related to TAF |
| 102 |
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| 103 |
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checkpoint40pre6 |
| 104 |
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o split dynamics into thermodynamics & dynamics |
| 105 |
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o corresponding split of calc_diffusivity into |
| 106 |
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calc_diffusivity, calc_viscosity |
| 107 |
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(kpp_calc_diff, kpp_calc_visc). |
| 108 |
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o Added diffkr, kapgm to control variables |
| 109 |
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o bug fix in gmredi_slope_limit for ldd97 |
| 110 |
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| 111 |
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checkpoint40pre5 |
| 112 |
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o proper initialization of Adams-Bashforth time stepping |
| 113 |
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+ uses forward step for very first step of model (iter=0) |
| 114 |
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o re-generated *all* output since almost all output is modified by this |
| 115 |
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change (sorry but we've been putting this one off for about 2 years) |
| 116 |
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+ natl_box, aim.5l_Equatorial_Channel and aim.5l_zon-ave were |
| 117 |
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*not* regenerated since they are already out of date and I don't |
| 118 |
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want to create the impression that they are suddenly working. |
| 119 |
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o removed KAP stuff for DEC's |
| 120 |
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o modified/added many .cvsignore files in */code and */input |
| 121 |
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o added new expt "solid-body.cs-32x32x1" |
| 122 |
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+ this uses an alternative form of ini_curvilinear_grid.F which |
| 123 |
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is not necessarily any better than the current one... |
| 124 |
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| 125 |
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checkpoint40pre4 |
| 126 |
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o added re-initialisations of utrans,vtrans,rtrans in |
| 127 |
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calc_common_factors which are crucial for TAF. |
| 128 |
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o extended iMin,jMin range for calc_common_factors, |
| 129 |
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calc_diffusivity |
| 130 |
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o added option ALLOW_PASSIVE_TRACER |
| 131 |
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o a few minor updates and fixes |
| 132 |
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| 133 |
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checkpoint40pre3 |
| 134 |
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o created calc_gtr1.F for gad package |
| 135 |
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o split the_main_loop and re-introduced forward_step |
| 136 |
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o some recomputations of nIter0 for TAMC |
| 137 |
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| 138 |
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checkpoint40pre2 |
| 139 |
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o Updated to latest branch of AJA, JMC |
| 140 |
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o Added gradient check package |
| 141 |
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o Added routines for passive tracer handling |
| 142 |
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o Added carbon sequestration sensitivity experiment |
| 143 |
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| 144 |
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checkpoint39 |
| 145 |
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o Modifications and fixes to support TAMC |
| 146 |
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(mainly missing or wrong directives) |
| 147 |
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o Corrected common blocks when fooling TAMC to produce adjoint I/O |
| 148 |
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in addummy_in_stepping |
| 149 |
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o Updated verification/vero/ (bug fixes in code/, correct pickups in input/) |
| 150 |
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o Enabled "sliced" (xz-,yz-) exchanges, needed for obcs. |
| 151 |
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o Included following packages: |
| 152 |
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cal: calendar |
| 153 |
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exf: external forcing |
| 154 |
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ecco: essential routines to control use of cal, exf |
| 155 |
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(NB: this is not the full ECCO environment) |
| 156 |
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o disabled some packages by default in genmake |
| 157 |
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| 158 |
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checkpoint38 |
| 159 |
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o see notes_c37_adj.txt |
| 160 |
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o corrected wrong layer index in external_forcing_t |
| 161 |
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o replaced the_main_loop/forward_step by the_main_loop |
| 162 |
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o removed forceoutput from write_state |
| 163 |
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(replaced criteria for initial/final state) |
| 164 |
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o added runtime flag for pre-C35 pickups: usePickupBeforeC35 |
| 165 |
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| 166 |
checkpoint37 |
checkpoint37 |
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o mdsio.F routine split and packaged in pkg/mdsio |
o mdsio.F routine split and packaged in pkg/mdsio |
| 168 |
(mdsio.F and mdsio_gl.F still exist in eesupp/src but are not |
(mdsio.F and mdsio_gl.F still exist in eesupp/src but are not |
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