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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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Branch icebear |
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7 mar 03 |
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Branched off ecco_c44_e27 |
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Bug fix in pkg/ctrl/ctrl_init.F |
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==================================================================== |
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ecco_c44_e27 |
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o exf: |
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- Enable initialisation of forcing fields to constant |
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(runtime) values. |
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- in exf_getffields.F |
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Reduce i-/j-loop to interior domain, discarding overlaps. |
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That also fixes wrong TAF-key computations for key_1, key_2 |
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with bulf formulae. |
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- exf_init.F modify #ifdef for exf_init_evap |
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- exf_getffieldrec.F, ctrl_getrec.F |
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The following INT-usages are not safe: |
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fldsecs = int(fldsecs/fldperiod)*fldperiod |
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fldcount = int(fldsecs/fldperiod) + 1 |
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and were modified. |
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- added repeatPeriod (from MAIN branch) |
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o grdchk: updated and merged |
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- has both ADM and TLM checks |
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- works for single- and multi-proc. |
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- output cleaned |
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- worked successfully for parallel DIVA |
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Needed one update in EEPARAMS.h and updates in ctrl package |
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More modif's may be necessary for ECCO code to support TLM. |
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o autodiff: checkpoint_lev... |
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- updated storing for bulk formulae (some arrays were missing) |
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- added state for seaice package |
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- synchronized with main branch |
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o DIVA: |
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Modif.s in |
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- cost_init.F |
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- cost_averagesfields.F |
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- ecco_the_main_loop.F |
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- ecco_the_model_main.F |
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and added cost_final_restore.F cost_final_store.F |
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o With these changes, it is possible to fully separate |
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the first forward run to compute the cost function (mdthe_main_loop) |
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and adjoint runs over individual DIVA intervals (adthe_main_loop) |
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into separate model executions. |
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This enables better tuning of DIVA to given queue sizes. |
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o Loss of cost function value in consecutive DIVA runs is |
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fixed by storing to 'costfinal' file. |
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o Appropriate call of ctrl_unpack/_pack,grdchk_main at |
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beginning/end of adjoint integration is accounted for. |
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The current changes apply to TAF-1.4.26. |
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TAF has one remaining bug, requiring one manual change |
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(see MITgcm manual). |
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o bug fix plus modif for ubar, vbar in cost_averagesfields |
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o cal: synchronized between MAIN and ecco-branch |
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icebear4 |
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o Added cost_ice for sea-ice volume sensitivity experiment. |
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o ecco_the_model_main.F: SEAICE_WRITE_PICKUP must precede WRITE_CHECKPOINT |
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o Reduced derivative singularities in pkg/seaice. |
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o Updated verification/natl_box_adjoint |
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icebear3 |
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o Removed spurious iikey and idkey |
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o pkg/exf |
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- bug fix in treatment of downward radiation |
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o pkg/seaice |
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- added initial sea-ice thickness parameter SEAICE_initialHEFF |
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o updated verification/natl_box_adjoint |
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icebear2 |
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o Added missing /* */ to CPP comments in pkg/seaice, pkg/exf, |
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kpp_transport_t.F,and ecco_the_main_loop.F |
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o adjoint-friendly modifications to pkg/seaice |
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o added verification/lab_sea as per release1_p12_pre |
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ecco_c44_e26 |
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o Merging pkg/exf and pkg/seaice from cvs tag ecco_ice2 |
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o exf: Modifications to correctly handle evap field for adjoint |
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o grdchk: |
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Added code to perform gradient checks for bulk formulae/atmos. state |
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(atemp, aqh, uwind, vwind). |
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NOTE: |
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This package is out of synch with c48 package. |
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The latter also has the tangent linear gradient checks. |
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Need to be merged. |
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o verification/natl_box_adjoint: |
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* added new setup: code_bulk/, input_bulk, results_bulk |
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(Experiment 2, described in README) |
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uses bulk formulae and atmos. state as control instead of |
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air-sea fluxes. |
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Performs gradient checks for first 4 elements of atemp control. |
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* changed standard verification to perform |
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gradient checks on first 4 elements on hflux control. |
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* gmredi switched off (will come after merge with c48). |
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ecco_c44_e25 |
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o Merging some GM changes from main trunk (c47) to ecco-branch. |
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o Updating verif. natl_box_adjoint with GMRedi. |
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o Adding setup with explicit differentiaton of pressure solver. |
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o Bug fix: missing OBCS_OPTIONS.h for sponge layer code. |
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o (Re-?) Commiting old bug fixes in kpp to ecco-branch |
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(kpp_calc.F, kpp_routines.F) |
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o exf: |
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updated external forcing package |
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- cleaned old exfa stuff |
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- bug fixes |
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(missing OBCS_OPTIONS.h in two routines) |
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- enable easy to use "no forcing". |
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- added exf I/O for atmospheric loading |
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- added exf I/O for runoff data |
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- transfered scaling between exf <-> MITgcm to exf namelist |
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ecco_c44_e24 |
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o modifications to gradient check package (Martin Losch) |
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- enable centered differences |
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- modified format of standard output |
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o bug fix for nwettile contents |
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so far assumed global sum in first entry (1,1,k), |
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needed for global control vector |
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-> introduced new variable nwet[c/w/s]global(nr) |
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o shifts of calls to cal/exf package to be accessible |
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in MITgcm stand-alone |
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o shifted packages_init_variables before convective_adjustment_ini |
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(corresponding update of TAF tape initialisation). |
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o removed auxiliary field in impldiff |
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(caused numerical differences for GMRedi cases) |
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o updated obcs control part (G. Gebbie) |
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o removed some f90 comments ("!") |
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o Bug fixes and updates in cost package |
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* cost_final: correct multiplier mult_tauv, mult_sflux |
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* cost_hyd: added call cost_ssh |
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* cost_init_barfiles.F: replaced arrays by tmpfld's |
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* cost_readtopexmean.F: ersmask -> tpmeanmask |
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* cost_weights.F: corrected wtheta[2], wsalt[2] |
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o cleaned exchanges in cg2d.F |
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ecco_c44_e23 |
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merged patches between release1_p1 and release1_p2: |
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o fixed array boundary problem for adjoint |
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(related to partial recomputation within subroutine |
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related to dynamics -> calc_viscosity -> mom_... |
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o fixed recomputation in thermodynamics |
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o prepare (but not complete) recomputation problem in impldiff |
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o fixed problem for adjoint of global_max |
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o switched off sponge layer code in external_forcing |
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Bug fix in ctrl_mask_set_yz (spotted by G. Gebbie) |
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ecco_c44_e22 |
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o Finally, the merges with the Scripps cost function terms: |
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Various additions, modifications, quality checks. |
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o Plus: Included switch ALLOW_AUTODIFF_MONITOR to handle |
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monitoring of adjoint state. |
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o Plus: removed comm_stats, ini_communication_patterns from diff. list |
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(no more need to "keep" MPI headers for adjoint generation) |
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o Plus: exf changes: |
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o added run-off routine |
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o additional storing needed for ustress,vstess |
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because of state-dependent quality check |
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o added missing initialisations |
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o Plus: genmake with MAKEDEPEND variable was still missing in ecco-branch |
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NB: - verification/natl_box_adjoint/ 240 steps run |
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* looks ok under Linux (twain.lcs.mit.edu) |
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* looks ok on MIT SUN's (fjord.mit.edu) |
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* NaN in reverse mode on Scripps SUN's at iter=214 |
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* NaN in reverse mode on IBM SP3 (BlueHorizon) at iter=204 |
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- 1 year forward int. global 2x2 deg. produces similar cost functions |
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* all cost terms of new code are slightly smaller (0.5 to 3%). |
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ecco_c44_e21 |
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o reversed order of ctrl/cost initialisation |
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o gmredi_slope_psi.F: Inconsistent types in MIN/MAX expressions |
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o modified to enable ctrl field swapping |
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o bug fix for global sum of ncvarlength in ctrl_init |
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o no more call to ctrl_unpack from ctrl_init |
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o no more write of ctrl vector in ctrl_pack |
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however, init. of control vector from ctrl_unpack |
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o various bug fixes & consistent nobcs handling in |
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ctrl_pack/unpack routines (by G. Gebbie) |
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o optim package: Added obcs control part for lsopt I/O |
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(by G. Gebbie) |
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o missing call to obcs_diags |
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o moved calls in packages_init_fixed to packages_readparms |
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because some quantities are needed earlier. |
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ecco_c44_e20 |
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o before major merges from the Scripps setup |
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here are two small updates: |
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- field swapping for surface flux controls enabled |
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(remains t.b.d. for atmos. state plus obcs) |
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- bug fix in active_file.F for xz-/yz- routines |
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- added missing xz-/yz- routines to active_file_ad.F |
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ecco_c44_e19 |
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o merged necessary patches: |
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- AD-related changes for GMRedi |
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- fixes i KPP (delZ -> drF) |
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- hook to OBCS songe layer code in external_forcing |
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- errorMessageUnit non-zero in eeboot.F |
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- included GMREDI, EXACT_CONSERV to natl_box_adjoint verif. |
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ecco_c44_e18 |
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o sponge layer code for obcs was missing |
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- added hook in external_forcing.F |
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- added storing for TAF |
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o new routine cost_init_barfiles to initialise |
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adjoint fields adtbar, adsbar, adpsbar |
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(needed in conjunction with corrected ladinit for active I/O) |
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o cleaned up and corrected order in packages_readparms, ecco_readparms |
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o corrected and simplified weights for obcs controls |
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- weight fields simplified |
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- bug fix in ctrl_pack |
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- no more write of control vector in ctrl_pack |
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o i/j index bug fixes in cost_ssh_mean |
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ecco_c44_e17 |
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o bug fixes in cost package |
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* wrong identifier for active I/O of monthly mean psbar |
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(cost_averagesfields, cost_ssh) xx_psbar_dummy |
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* cleaned all identifier for active I/O of monthly fields |
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* wrong ladinit in various cost routines |
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o merge with interval (chkpt44c_post - chkpt44d_post) |
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* added missing EXCLUDE_MONITOR flags |
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* changed "e" to "_d" in gmredi_slope_limit, gmredi_slope_psi |
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(incompatible typ in MIN/MAX expressions caused problems |
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on IBM SP3) |
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* in genmake added variable MAKEDEPEND |
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plus resetting for case SunOS |
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added timer_stats.c routine for IBM SP3 |
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* removed variables in dynamics |
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ecco_c44_e16 |
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o new ECCO checkpoint, the first since ecco_c43_e15 |
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which is branched from MITgcm. |
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All changes were merged in between (see ecco-branch-mod? tags). |
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o last changes: |
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* assuming path for TAF and TAMC are known (e.g. in $path) |
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* genmake: |
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- added tools/xmakedepend to circumvene shortcoming of |
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SUN's makedepend (size too small) |
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- invoking ../tools/xmakedepend instead of makedepend |
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- changed compiler flags for case SunOS |
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ecco-branch-mod5 |
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o mod's to reproduce open boundary run |
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o enable field swapping for OB's and climatology |
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o update store directives for OB control |
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o added option ALLOW_OBCS_PRESCRIBE |
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o call of getobcs now out of obcs_calc (param. list modified) |
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ecco-branch-mod4 |
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o this is the second part of changes necessary to reconcile |
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the natl_box_adjoint verification (with and without grdchk). |
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>>>!!! CHANGES BETWEEN THE TAGS ecco-branch-mod3 !!!<<< |
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>>>!!! AND ecco-branch-mod4 !!!<<< |
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>>>!!! SHOULD BE MERGED INTO THE MAIN TRUNK !!!<<< |
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- genmake: removed $S64 overwrite for case SunOS |
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- pkg/exf: update and corrections for field swapping and obcs |
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- pkg/ecco: parameter lists for the_model_main, the_main_loop |
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harmonized between ECCO and MITgcm |
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- pkg/autodiff: added flow directives for obcs, mdsio_gl_slice |
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updated checkpointing_lev... lists for obcs |
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- model/src: minor changes in forward_step, plot_field |
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- pkg/mdsio: added mdsio_gl_slice |
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ecco-branch-mod3 |
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o this is the first part of changes necessary to reconcile |
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natl_box_adjoint verification (with and without grdchk). |
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This set of changes is relevant for ECCO only. |
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The next set/tag of changes (ecco-branch-mod4) |
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should be merged into the main trunk. |
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- update some options |
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- parameter lists of ecco_the_model_main and ecco_the_main_loop |
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differed from those of the MITgcm counterparts. |
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ecco-branch-mod2 |
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o update ecco-branch-mod1 to checkpoint44 |
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o exclude from updates: |
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- verification/ |
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- adjoint/ |
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- pkg/cost |
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- pkg/ctrl |
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- pkg/ecco |
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- pkg/obcs |
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- model/src/the_model_main.F |
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- model/src/the_main_loop.F |
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checkpoint44 |
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o apply Shapiro filter on T&S before calc_PhiHyd (stagger time stepping) |
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o fix bug in mom_vi_del2uv |
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o added some stuff for AD |
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ecco-branch-mod1 |
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o based on c43 |
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o replaced packages cost, ctrl, ecco, obcs |
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o removed MITgcm verif.'s, added ECCO verif.'s |
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o added lsopt, optim for line search optimization. |
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checkpoint43 |
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o added two new advection tests |
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o added global 4x4 degree ocean test |
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o added test of H&S94 with free surface on cube |
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o some final mods for gradient check, adjoint,... |
| 312 |
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| 313 |
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checkpoint42 |
| 314 |
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Fixed AD-related problems: |
| 315 |
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o Store directives up-to-date with re-arranged Adams-Bashforth |
| 316 |
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(mainly thermodynamics.F) |
| 317 |
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o New store directives for multi-dim. advection schemes |
| 318 |
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* new CPP flag ALLOW_MULTI_DIM_ADVECTION |
| 319 |
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* new common block and key passkey |
| 320 |
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(mainly gad_advection.F) |
| 321 |
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o Modified store directives for split of dynamics/thermodynamics |
| 322 |
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for the case ALLOW_KPP |
| 323 |
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o Cleaned argument list for timestep_tracer.F |
| 324 |
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|
| 325 |
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checkpoint41 |
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o re-formatted/added comments in prologues of key subroutines |
| 327 |
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to work with protex |
| 328 |
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|
| 329 |
checkpoint40 |
checkpoint40 |
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o moved calc_gs, calc_gt and calc_tr1 back to model/src |
o moved calc_gs, calc_gt and calc_tr1 back to model/src |
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o added FLT (floats) package from Arne along with demo. experiment |
o added FLT (floats) package from Arne along with demo. experiment |
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