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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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| 6 |
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o fix MNC coordinate variables so that they now contain per-face index |
| 7 |
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values (instead of xC,xG,yC,yG values) when run with EXCH2 since, in |
| 8 |
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general, EXCH2 grids are only aligned to a "local" coordinate system |
| 9 |
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o test diagnostics pkg in dic_example (no output) and ideal_2D_oce (with ouput) |
| 10 |
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o Implement instantaneous output within pkg diagnostics: |
| 11 |
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setting a negative frequency in data.diagnostics produces |
| 12 |
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"snap-shot" output (as opposed to time-average if freq > 0) |
| 13 |
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o move out off EQUIVALENCE all diagnostics that fizhi does not use ; |
| 14 |
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NOTE: change ptracer diagnostics name: use 2 characters to work with |
| 15 |
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more than 9 tracers. Add also diagnostics of advect & diffus flux. |
| 16 |
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o more CF compliance: convert all MNC 'iter' variables to 'T' so that it |
| 17 |
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becomes the coordinate variable for the 'T' dimension |
| 18 |
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o add CF-style coordinate variables to MNC |
| 19 |
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- just a first cut: numbers are meaningless on the cubesphere and |
| 20 |
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missing along the T axis but otherwise it works! |
| 21 |
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o add surface flux diagnostics: TAUX, TAUY, TFLUX, TRELAX, TICE, SFLUX, SRELAX |
| 22 |
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o pkg/thSIce: read initial state from 6 files ; allow monitor to use MNC. |
| 23 |
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o add diagnostics of advective & diffusive flux for T & S (pTracers coming soon) |
| 24 |
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this is based directly on what the model compute, so that the content of |
| 25 |
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each diagnostics might be affected by switching options (e.g., implicitDiffusion) |
| 26 |
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o small changes for diagnostics (gad_biharm_?.F, arguments of S/R impldiff.F) |
| 27 |
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o clean up build options files for SunOS, in particular |
| 28 |
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- remove -traditional from xmakedepend |
| 29 |
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- change -xarch=v9 to -xarch=native for f77 |
| 30 |
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- restore use of make (not gmake) |
| 31 |
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- add CC=gcc if using g77 |
| 32 |
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o changes per discussion of AM, JMC, & EH3 today: |
| 33 |
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- move redundant "grid" variables out of "state" -- in preparation of |
| 34 |
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creating proper CF-style coordinate variables and in recognition |
| 35 |
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that any/all grid variables can be easily copied (eg. w/NCO) from |
| 36 |
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the grid files into any of the other NetCDF files |
| 37 |
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- *always* output grid variables with MDSIO (this will eventually be |
| 38 |
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changed) |
| 39 |
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- output MNC grid file if useMNC is true |
| 40 |
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o every instance of _END_MASTER() has been found and replaced with |
| 41 |
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_END_MASTER( myThid ) in order to satisfy certain picky Sun |
| 42 |
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preprocessors |
| 43 |
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o re-arrange diagnostics pkg initialisation: |
| 44 |
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- allow each package to extend the available diagnostics list |
| 45 |
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- add some checking and fix small problems (multi-threaded, ...) |
| 46 |
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- new S/R diagnostics_fill (replace fill_diagnostics): |
| 47 |
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look through the short list of active diag. (instead of the long list) |
| 48 |
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create function DIAGNOSTICS_IS_ON to tell if a diagnostics is active |
| 49 |
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| 50 |
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checkpoint57a_post |
| 51 |
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o this set of changes restores TAMC compatibility |
| 52 |
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tested for global_ocean.90x40x15 adjoint on trough |
| 53 |
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(what a pain) |
| 54 |
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| 55 |
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checkpoint57a_pre |
| 56 |
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o some modifs in tools/build_options for sunos |
| 57 |
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o call ctrl_pack for ctrl at end for optimcycle=0 |
| 58 |
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| 59 |
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checkpoint57 |
| 60 |
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o add horizontal bi-harmonic viscosity for vertical velocity |
| 61 |
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- new parameter viscA4W (defaults to viscA4) |
| 62 |
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- affects only non-hydrostatic code |
| 63 |
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- to be done: no-slip lateral boundary conditions |
| 64 |
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o switch back to "sflux = sflux - runoff" in exf_getforcing.F |
| 65 |
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o implement Implicit Vertical advection for pTracers |
| 66 |
o depth convergence accelerator: replace deltaTtracer by dTtracerLev(k) |
o depth convergence accelerator: replace deltaTtracer by dTtracerLev(k) |
| 67 |
(implemented also for implicit vertical diffusion & advection) |
(implemented also for implicit vertical diffusion & advection) |
| 68 |
o OBCS: extend application of tracer open boundary conditions |
o OBCS: extend application of tracer open boundary conditions |
| 71 |
and include in natl_box_adjoint |
and include in natl_box_adjoint |
| 72 |
o untangle a few ifdefs related to cost, ctrl, autodiff |
o untangle a few ifdefs related to cost, ctrl, autodiff |
| 73 |
untangel a few ALLOW_ECCO_OPTIMIZATION |
untangel a few ALLOW_ECCO_OPTIMIZATION |
| 74 |
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o Apply Cooper & Haines representative estimates also at sub-surface (k=Nr) |
| 75 |
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(theta2, salt2 in ecco_cost_weights) |
| 76 |
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|
| 77 |
checkpoint56c_post |
checkpoint56c_post |
| 78 |
o OBCS as control variables |
o OBCS as control variables |
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