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revision 1.393 by edhill, Tue Nov 23 21:25:24 2004 UTC revision 1.419 by edhill, Fri Dec 17 21:28:26 2004 UTC
# Line 3  $Header$ Line 3  $Header$
3      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
4      ==============================      ==============================
5    
6    o add CF-style coordinate variables to MNC
7      - just a first cut:  numbers are meaningless on the cubesphere and
8        missing along the T axis but otherwise it works!
9    o add surface flux diagnostics: TAUX, TAUY, TFLUX, TRELAX, TICE, SFLUX, SRELAX
10    o pkg/thSIce: read initial state from 6 files ; allow monitor to use MNC.
11    o add diagnostics of advective & diffusive flux for T & S (pTracers coming soon)
12      this is based directly on what the model compute, so that the content of
13      each diagnostics might be affected by switching options (e.g., implicitDiffusion)
14    o small changes for diagnostics (gad_biharm_?.F, arguments of S/R impldiff.F)
15    o clean up build options files for SunOS, in particular
16      - remove -traditional from xmakedepend
17      - change -xarch=v9 to -xarch=native for f77
18      - restore use of make (not gmake)
19      - add CC=gcc if using g77
20    o changes per discussion of AM, JMC, & EH3 today:
21      - move redundant "grid" variables out of "state" -- in preparation of
22        creating proper CF-style coordinate variables and in recognition
23        that any/all grid variables can be easily copied (eg. w/NCO) from
24        the grid files into any of the other NetCDF files
25      - *always* output grid variables with MDSIO (this will eventually be
26        changed)
27      - output MNC grid file if useMNC is true
28    o every instance of _END_MASTER() has been found and replaced with
29      _END_MASTER( myThid ) in order to satisfy certain picky Sun
30      preprocessors
31    o re-arrange diagnostics pkg initialisation:
32     - allow each package to extend the available diagnostics list
33     - add some checking and fix small problems (multi-threaded, ...)
34     - new S/R diagnostics_fill (replace fill_diagnostics):
35       look through the short list of active diag. (instead of the long list)
36       create function DIAGNOSTICS_IS_ON to tell if a diagnostics is active
37    
38    checkpoint57a_post
39    o this set of changes restores TAMC compatibility
40      tested for global_ocean.90x40x15 adjoint on trough
41      (what a pain)
42    
43    checkpoint57a_pre
44    o some modifs in tools/build_options for sunos
45    o call ctrl_pack for ctrl at end for optimcycle=0
46    
47    checkpoint57
48    o add horizontal bi-harmonic viscosity for vertical velocity
49      - new parameter viscA4W (defaults to viscA4)
50      - affects only non-hydrostatic code
51      - to be done: no-slip lateral boundary conditions
52    o switch back to "sflux = sflux - runoff" in exf_getforcing.F
53    o implement Implicit Vertical advection for pTracers
54    o depth convergence accelerator: replace deltaTtracer by dTtracerLev(k)
55      (implemented also for implicit vertical diffusion & advection)
56    o OBCS: extend application of tracer open boundary conditions
57      to a strip beyond the boundary of width Olx/Oly
58    o add call monitor to TAF set of required calls (flow directives)
59      and include in natl_box_adjoint
60    o untangle a few ifdefs related to cost, ctrl, autodiff
61      untangel a few ALLOW_ECCO_OPTIMIZATION
62    o Apply Cooper & Haines representative estimates also at sub-surface (k=Nr)
63      (theta2, salt2 in ecco_cost_weights)
64    
65    checkpoint56c_post
66    o OBCS as control variables
67      - update ctrl_ad_diff.list, obcs_ad_diff.list
68      - remove balance of obcs controls from default
69      - fix index bug nobcs in ctrl_init
70      - fix dummy fields filen in ctrl_pack
71      - add dummy weights for obcs
72    o lsopt: comment out fort.94 output
73    o optim:
74      - remove unnecessary header files
75      - adjusted namelists
76      - add xerbla.F to Makefile
77    o exf:
78      - multiple modifications of exf_check_range
79      - unit change in exf_init_runoff from [m/year] to [m/s]
80    o mdsio:
81      - i/o-vector change debugLevel from debLevA to debLevB
82    
83    checkpoint56b_post
84    o collect all ptracers output in an new routine (PTRACERS_OUTPUT) that
85      is called from DO_THE_MODEL_IO
86      - rename PTRACERS_STATV_WRITE to PTRACERS_WRITE_TIMEAVE
87      - introduce new parameter PTRACERS_dumpFreq (defaults to dumpFreq)
88      - clean up PTRACERS_WRITE_TIMEAVE a little
89    o add another verification experiment that tests both the cfc-pkg and
90      the gchem-pkg with GCHEM_SEPARATE_FORCING undefined, that is with
91      reactive tendencies treated inline with regular timestepping
92    o testreport previously did a lousy job of comparing small numbers, so
93      we (Ed and Martin) changed the  way the cut-off of 1.e-12 is
94      implemented in the little c-progam tmp_cmpnum.c which is embedded in
95      testreport.
96    o ptracers_monitor: bug fix for MPI
97    
98    checkpoint56a_post
99    o GCHEM: finish reorganizating the package
100      - forward_step calls GCHEM_CALC_TENDENDY, which computes gchemTendency
101        (introduces another 3D-array for each passive tracer, but only if
102        GCHEM_SEPARATE_FORCING is undefined. For GCHEM_SEPARATE_FORCING
103        gchemTendency is not needed because the timestep is done separately)
104      - gchemTendency is added to gPtr in GCHEM_ADD_TENDENCY
105      - GCHEM is now---more or less cleanly---separate from PTRACERS
106      - to bo done: handling of surfaceForcingPtr that is needed for KPP not
107        so clear to me how that should be done in a general way.
108    o CFC: improve formatting of output in CFC_ATMOS
109    o PTRACERS:
110      - rename GCHEM_MONITOR to PTRACERS_MONITOR and call it from MONITOR, so
111        that ALL experiments with ptracers enable can be checked. This makes
112        GCHEM_MONITOR obsolete.
113      - include a runtime parameter PTRACERS_monitorFreq that defaults to
114        monitorFreq
115      - set default PTRACERS_write_mdsio to false if PTRACERS_write_mnc is true
116  o add PTRACERS (PTR0[1-5]) to testreport output  o add PTRACERS (PTR0[1-5]) to testreport output
117  o exf_check_range:  o exf_check_range:
118    * default changed to .TRUE.    * default changed to .TRUE.
# Line 25  o GCHEM: Line 135  o GCHEM:
135      be replaced by a 3D array that is computed before thermodynamics; for      be replaced by a 3D array that is computed before thermodynamics; for
136      this, the tracer ID iTracer had to be included into the parameter list      this, the tracer ID iTracer had to be included into the parameter list
137      of ptracers_forcing      of ptracers_forcing
138    - set up forward_step for a call to gchem_forcing, that will replace    - set up forward_step to call gchem_forcing, that will replace
139      gchem_forcing_int in ptracers_forcing      gchem_forcing_int in ptracers_forcing
140    - cleaning up    - cleaning up
141  o small cleaning of exch2: remove files that are also in eesupp/src  o small cleaning of exch2: remove files that are also in eesupp/src
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