| 3 |
Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
| 4 |
============================== |
============================== |
| 5 |
|
|
| 6 |
|
o add horizontal bi-harmonic viscosity for vertical velocity |
| 7 |
|
- new parameter viscA4W (defaults to viscA4) |
| 8 |
|
- affects only non-hydrostatic code |
| 9 |
|
- to be done: no-slip lateral boundary conditions |
| 10 |
|
o switch back to "sflux = sflux - runoff" in exf_getforcing.F |
| 11 |
|
o implement Implicit Vertical advection for pTracers |
| 12 |
|
o depth convergence accelerator: replace deltaTtracer by dTtracerLev(k) |
| 13 |
|
(implemented also for implicit vertical diffusion & advection) |
| 14 |
|
o OBCS: extend application of tracer open boundary conditions |
| 15 |
|
to a strip beyond the boundary of width Olx/Oly |
| 16 |
|
o add call monitor to TAF set of required calls (flow directives) |
| 17 |
|
and include in natl_box_adjoint |
| 18 |
|
o untangle a few ifdefs related to cost, ctrl, autodiff |
| 19 |
|
untangel a few ALLOW_ECCO_OPTIMIZATION |
| 20 |
|
o Apply Cooper & Haines representative estimates also at sub-surface (k=Nr) |
| 21 |
|
(theta2, salt2 in ecco_cost_weights) |
| 22 |
|
|
| 23 |
|
checkpoint56c_post |
| 24 |
|
o OBCS as control variables |
| 25 |
|
- update ctrl_ad_diff.list, obcs_ad_diff.list |
| 26 |
|
- remove balance of obcs controls from default |
| 27 |
|
- fix index bug nobcs in ctrl_init |
| 28 |
|
- fix dummy fields filen in ctrl_pack |
| 29 |
|
- add dummy weights for obcs |
| 30 |
|
o lsopt: comment out fort.94 output |
| 31 |
|
o optim: |
| 32 |
|
- remove unnecessary header files |
| 33 |
|
- adjusted namelists |
| 34 |
|
- add xerbla.F to Makefile |
| 35 |
|
o exf: |
| 36 |
|
- multiple modifications of exf_check_range |
| 37 |
|
- unit change in exf_init_runoff from [m/year] to [m/s] |
| 38 |
|
o mdsio: |
| 39 |
|
- i/o-vector change debugLevel from debLevA to debLevB |
| 40 |
|
|
| 41 |
|
checkpoint56b_post |
| 42 |
|
o collect all ptracers output in an new routine (PTRACERS_OUTPUT) that |
| 43 |
|
is called from DO_THE_MODEL_IO |
| 44 |
|
- rename PTRACERS_STATV_WRITE to PTRACERS_WRITE_TIMEAVE |
| 45 |
|
- introduce new parameter PTRACERS_dumpFreq (defaults to dumpFreq) |
| 46 |
|
- clean up PTRACERS_WRITE_TIMEAVE a little |
| 47 |
|
o add another verification experiment that tests both the cfc-pkg and |
| 48 |
|
the gchem-pkg with GCHEM_SEPARATE_FORCING undefined, that is with |
| 49 |
|
reactive tendencies treated inline with regular timestepping |
| 50 |
|
o testreport previously did a lousy job of comparing small numbers, so |
| 51 |
|
we (Ed and Martin) changed the way the cut-off of 1.e-12 is |
| 52 |
|
implemented in the little c-progam tmp_cmpnum.c which is embedded in |
| 53 |
|
testreport. |
| 54 |
|
o ptracers_monitor: bug fix for MPI |
| 55 |
|
|
| 56 |
|
checkpoint56a_post |
| 57 |
|
o GCHEM: finish reorganizating the package |
| 58 |
|
- forward_step calls GCHEM_CALC_TENDENDY, which computes gchemTendency |
| 59 |
|
(introduces another 3D-array for each passive tracer, but only if |
| 60 |
|
GCHEM_SEPARATE_FORCING is undefined. For GCHEM_SEPARATE_FORCING |
| 61 |
|
gchemTendency is not needed because the timestep is done separately) |
| 62 |
|
- gchemTendency is added to gPtr in GCHEM_ADD_TENDENCY |
| 63 |
|
- GCHEM is now---more or less cleanly---separate from PTRACERS |
| 64 |
|
- to bo done: handling of surfaceForcingPtr that is needed for KPP not |
| 65 |
|
so clear to me how that should be done in a general way. |
| 66 |
|
o CFC: improve formatting of output in CFC_ATMOS |
| 67 |
|
o PTRACERS: |
| 68 |
|
- rename GCHEM_MONITOR to PTRACERS_MONITOR and call it from MONITOR, so |
| 69 |
|
that ALL experiments with ptracers enable can be checked. This makes |
| 70 |
|
GCHEM_MONITOR obsolete. |
| 71 |
|
- include a runtime parameter PTRACERS_monitorFreq that defaults to |
| 72 |
|
monitorFreq |
| 73 |
|
- set default PTRACERS_write_mdsio to false if PTRACERS_write_mnc is true |
| 74 |
|
o add PTRACERS (PTR0[1-5]) to testreport output |
| 75 |
|
o exf_check_range: |
| 76 |
|
* default changed to .TRUE. |
| 77 |
|
* will check values for niter0 if debLevA, every timestep if debLevB |
| 78 |
|
* STOP in exf_check_range if 'out of range' |
| 79 |
|
* range chosen generous to allow for potential extema |
| 80 |
|
TBD: a version with stricter range |
| 81 |
|
permitted range would be runtime parameters |
| 82 |
o GMredi: |
o GMredi: |
| 83 |
- fix ldd97 slope limit ; extend valid domain of Psi-Bolus ; |
- fix ldd97 slope limit ; extend valid domain of Psi-Bolus ; |
| 84 |
- change S/R GRAD_SIGMA to be valid in the overlap on CS-grid. |
- change S/R GRAD_SIGMA to be valid in the overlap on CS-grid. |
| 87 |
- move call to GCHEM_FORCING_SEP, so that it is now called before |
- move call to GCHEM_FORCING_SEP, so that it is now called before |
| 88 |
the blocking exchanges to avoid computing halos in GCHEM_FORCING_SEP |
the blocking exchanges to avoid computing halos in GCHEM_FORCING_SEP |
| 89 |
- introduced a useGCHEM runtime flag and applied it everywhere. |
- introduced a useGCHEM runtime flag and applied it everywhere. |
| 90 |
|
- renamed PTRACERS_SEPARATE_FORCING to GCHEM_SEPARATE_FORCING; |
| 91 |
|
this flag is now only visible within GCHEM-pkg routines. |
| 92 |
|
- moved gchem_forcing_int temporarily into ptracers_forcing, this will |
| 93 |
|
be replaced by a 3D array that is computed before thermodynamics; for |
| 94 |
|
this, the tracer ID iTracer had to be included into the parameter list |
| 95 |
|
of ptracers_forcing |
| 96 |
|
- set up forward_step to call gchem_forcing, that will replace |
| 97 |
|
gchem_forcing_int in ptracers_forcing |
| 98 |
|
- cleaning up |
| 99 |
o small cleaning of exch2: remove files that are also in eesupp/src |
o small cleaning of exch2: remove files that are also in eesupp/src |
| 100 |
|
|
| 101 |
checkpoint56 |
checkpoint56 |
Parent Directory
| 
Revision Log
| 
Revision Graph
| 
Patch