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revision 1.363 by edhill, Thu Oct 7 19:31:14 2004 UTC revision 1.393 by edhill, Tue Nov 23 21:25:24 2004 UTC
# Line 3  $Header$ Line 3  $Header$
3      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
4      ==============================      ==============================
5    
6    o add PTRACERS (PTR0[1-5]) to testreport output
7    o exf_check_range:
8      * default changed to .TRUE.
9      * will check values for niter0 if debLevA, every timestep if debLevB
10      * STOP in exf_check_range if 'out of range'
11      * range chosen generous to allow for potential extema
12      TBD: a version with stricter range
13           permitted range would be runtime parameters
14    o GMredi:
15      - fix ldd97 slope limit ; extend valid domain of Psi-Bolus ;
16      - change S/R GRAD_SIGMA to be valid in the overlap on CS-grid.
17      - change the default GMREDI_OPTIONS.h: compile everything except Visbeck
18    o GCHEM:
19      - move call to GCHEM_FORCING_SEP, so that it is now called before
20        the blocking exchanges to avoid computing halos in GCHEM_FORCING_SEP
21      - introduced a useGCHEM runtime flag and applied it everywhere.
22      - renamed PTRACERS_SEPARATE_FORCING to GCHEM_SEPARATE_FORCING;
23        this flag is now only visible within GCHEM-pkg routines.
24      - moved gchem_forcing_int temporarily into ptracers_forcing, this will
25        be replaced by a 3D array that is computed before thermodynamics; for
26        this, the tracer ID iTracer had to be included into the parameter list
27        of ptracers_forcing
28      - set up forward_step for a call to gchem_forcing, that will replace
29        gchem_forcing_int in ptracers_forcing
30      - cleaning up
31    o small cleaning of exch2: remove files that are also in eesupp/src
32    
33    checkpoint56
34    o AIM: read land-Fraction earlier (from ini-fixed) and monitor land at nIter0
35    o mnc: cleanup "full" files--fixes out-of-memory problem
36    o ECCO-GODAE
37      * model/, pkg/, code/, input/ now complete w.r.t. ECCO-GODAE production setup
38      * fully merged and updated from SIO code
39        windstress sign change affects
40        - exf_inscal_[u/v]stress
41        - sign of xx_tau[u/v] adjustments
42        - signs in cost_scat
43      * ctrl_get_gen: avoid update of tau[u/v] for first few days
44      * natl_box_adjoint updated and compressed
45      * 2-level checkpoint switch added
46        (tested in EXP. 1 of natl_box_adjoint)
47      * new switch doInitXX to avoid init. of xx_... in optimcycle=0
48    o SVD
49      * first complete, non-hacked version for SVD calculations
50      * all interfaces clean w.r.t to handling of xx_..., adxx_..., g_xx_...
51        performed via direct access files admtlm_vector.it????
52        (via ctrl_[un]pack)
53      * optimcycle is used for ARPACK iteration counter
54        (note: adxx_... is iterated, rather than xx_...; latter is constant!)
55      * EV problem ok w.r.t. L2-norm in tangent space; need to check other norms
56        and add linear transforms where necessary
57      * controls are initial/final SST, SSS (can be extended; need to check
58        ctrl_set_[un]pack_xyz.F according to ctrl_set_[un]pack_xy.F
59    o mdsio: filename info to both stderr, stdout
60    o exf: exf_inscal_runoff: separated default conversion [m/year] -> [m/sec]
61      from sign change
62    
63    checkpoint55j_post
64    o isolate dissipation tendency (allow to keep it out off AB) in V.I form.
65      affects (truncation level) output.txt of global_ocean.cs32x15(&.thsice)
66    o add consistent build directories and .cvsignore files to verification
67    o added viscA4GridMin and viscA4GridMax for more control on biharmonic viscosity
68    o make all subroutines 30 or less characters in length for certain older
69      compilers to work (a thorough search only turns up two routines in
70      pkg/ptracers)
71    o allow (vecinv only) a different horiz. viscosity for Divergence and Vorticity;
72      affects (truncation level) output.txt of global_ocean.cs32x15(&.thsice)
73    
74    checkpoint55i_post
75    o change arrays for total vertical diffusivity (2.D if explicit,
76      3.D if implicit) ; each ptracer uses its own background value.
77    o added mnc/NetCDF output capability to ocn_compon_interf
78      - added bits to verification/cpl_aim+ocn so that it can run on
79        ITRDA and other clusters without the mpirun "-wd" option
80    o fixed wayward endif in mom_fluxform.F that messed up cyclindrical
81      configuration
82    o give MNC the ability to create additional files rather than
83      exceeding a specified file size limit "MNC_MAX_FILESIZE"
84      - the default is just less than 2GB which is a practical limit
85        on many systems
86    o Compute the non-local term using either KPP vertical diffusivity (=default)
87       or the total vertical diffusivity (when KPP_ghatUseTotalDiffus=T)
88    
89    checkpoint55h_post
90    o add verification test "vermix"
91    o remove all the *_ioinc flags and replace with the single global
92      outputTypesInclusive flag
93    o allow to set a vertical profile of vertical diffusivity for T & S
94    o call PACKAGE_BOOT & PACKAGES_READPARMS just after INI_PARMS
95    o useMNC moved from data.mnc to data.pkg
96    
97    checkpoint55g_post
98    o Renaming carbon AD experiments to comply with testreport conventions
99    o Updating adjoint of Held-Suarez hs94.1x64x5
100    o Fixing directives for non-ECCO forward_step, after ECCO directives
101      have been fixed to avoid recomp. of do_oceanic_phys
102      Works well for global_ocean.90x40x15,
103      but recomp. issue remains for carbon
104    o Updating adjoint output for natl_box_adjoint after
105      pkg/ecco has been modified (see taga c55d_post)
106    
107    checkpoint55f_post
108    o rename to timeave_init_fixed
109    
110    checkpoint55e_post
111    o some delicate re-shuffle of store directives to avoid one
112      extra call of do_oceanic_physics
113      affects ecco_the_main_loop.F, do_oceanic_physics.F
114      checkpoint_lev1_directives.h
115    o NB: this may break global_ocean adjoint temporarily,
116      but it is clear how to fix it. Will do later, need this now.
117    
118    checkpoint55d_post
119    o ECCO specific cost function terms (up-to-date with 1x1 runs)
120    o ecco_cost_weights is modified to 1x1 runs
121    o modifs to allow observations to be read in as
122      single file or yearly files
123    o enable to read exf forcing fields as either
124      single file or yearly files (flag useExfYearlyFields)
125    checkpoint55d_pre
126    
127    o switch between 2-level and 3-level checkpointing
128    o add ability of MNC to write local and "partial" (eg. 2D slices where
129      the full 3D field is never actually stored) arrays to NetCDF files
130      with the correct (that is, the complete multi-dimensional) set of
131      array indicies
132      - used in mom_vecinv() to write the diagFreq output
133      - tested (demonstrated) in verification/aim.5l_cs
134  o further mnc-ification  o further mnc-ification
135    - add verification/lab_sea to the list with mnc setups    - add verification/lab_sea to the list with mnc setups
136    - fix undefined mnc v-names in cd_code    - fix undefined mnc v-names in cd_code

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