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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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o faulks upgraded: re-generate output.txt that have changed: |
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global_ocean.cs32x15(.thsice), global_ocean_ebm, lab_sea, natl_box |
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o Added Bryan and Lewis, 1979, vertical diffusivity profile |
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o pkg/land: fix problem in land_impl_temp.F when Ts arround freezing. |
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o added Sadourny discretization of Coriolis |
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- moved some PARAMETERS from mom_*_coriolis.F to PARAMS.h |
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- re-enabled use of omega3 (useAbsVorticity) |
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o added Leith (Phys. Fluids, 1968, 10, 1409-1416) variable viscosity for |
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vector-invarianet equations |
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- note: does *NOT* yet use same variable visc. for no-slip BC's. |
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o recoded the lateral boundary conditions for non-hydrostatic w, this time |
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hopefully without new bugs |
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- still to do: biharmonic friction for non-hydrostatic w |
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o bug fix for mom_*_sidedrag: rA -> rAs,rAw |
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o regenerated output for global_ocean_ebm (using -ieee) |
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o fix mom_common/mom_*_sidedrag.F to recover numeric output prior to creation |
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of mom_common/ |
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- simple re-arrangement of instructions within computing loop |
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checkpoint53d_pre |
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checkpoint53c_post |
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o new version of coupler for AIM+thSIce and Ocean models |
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- new fields (SSS,h_MixLayer ...) are exchanged through the coupler |
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- land: change Evaporation of snow |
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- aim with thSIce: fix bug in snow-precip. |
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o changes to calc_gw.F |
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- bug fix for w^2 term near the bottom boundary |
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- (hopefully) improve the lateral slip boundary condtions for use with |
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partial/looped cells |
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- because the bug fix changes two verification experiments anyway (exp5 |
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and plume on slope), change the lateral boundary condition from half slip |
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to the value of no_slip_sides |
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o ebm package wasnt quite up to the parallel task. Fixed that. |
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o Adjoint of EBM package + verification |
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* TLM OK |
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* ADM not sufficient accuracy yet (needs further testing) |
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checkpoint53b_post |
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o Commiting new energy balance model to repository |
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* package is pkg/ebm |
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* verif. is verification/global_ocean_ebm |
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* references are in ebm_driver.F |
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C * X. Wang, P. Stone and J. Marotzke, 1999: |
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C Global thermohaline circulation. Part I: |
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C Sensitivity to atmospheric moisture transport. |
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C J. Climate 12(1), 71-82 |
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C * X. Wang, P. Stone and J. Marotzke, 1999: |
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C Global thermohaline circulation. Part II: |
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C Sensitivity with interactive transport. |
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C J. Climate 12(1), 83-91 |
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C * M. Nakamura, P. Stone and J. Marotzke, 1994: |
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C Destabilization of the thermohaline circulation |
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C by atmospheric eddy transports. |
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C J. Climate 7(12), 1870-1882 |
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o Will need long integration testing. |
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checkpoint53b_pre |
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o created pkg/mom_common in preparation for variable viscosity code |
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o renamed and split ini_mnc_io |
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o pkg/land: only liquid water can diffuse or run-off |
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o AIM using land: soil wetness availability account for snow |
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o added printMapIncludesZeros to EEPARMS namelist |
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checkpoint53a_post |
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o restore TAMC compatiility for exf_constants.h |
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(no usage of _d in .h) |
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o Additional storing in KPP in an attempt to fix |
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TAMC problem with adjoint of KPP code. |
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(no success...) |
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Identical code works fine with TAF. |
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o Fixed verification/natl_box_adjoint experiments. |
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Initial conditions for Experiments 4 and 5 are now |
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set to "SEAICE_initialHEFF=0", which is more reasonable, |
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and hence gives results closer to that of Experiment 2. |
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Experiment 6 requires "SEAICE_initialHEFF=1" and is working once again. |
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checkpoint53 |
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o stable checkpoint with up to date adjoint |
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TLM tests only run for 1st grdchk at the moment. Its unclear if |
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this is a code problem or a problem with resetting code for g_ |
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variables that is being autogenerated wrong. |
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Otherwise: |
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o code is testing well on Linux (P4 and AMD), SGI Alitix and Irix. |
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o IBM and HPQ tests could not be run because NCAR (IBM) and NCCS (HPQ) |
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are both still in chaos following their security messes. |
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checkpoint52n_post |
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o various build (mostly genmake2) changes including: |
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- ability to build/run more easily within Cygwin and MacOS X |
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- more complicated Makefiles with a stronger dependence on Gnu Make |
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o pkg/seaice modifications |
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- added SEAICE_deltaTtherm and SEAICE_deltaTdyn in order to reduce cost |
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of pkg/seaice. For time being, SEAICE_deltaTtherm = deltaTtracer |
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and SEAICE_deltaTdyn must be integer multiple of SEAICE_deltaTtherm |
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- changed proxy for geostrophic velocity and updated |
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verification/lab_sea/results/* accordingly |
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- removed ADI dynamic solver from pkg/seaice |
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- replaced all occurrences of 1/CSTICE or 1/CSUICE |
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they caused a segmentation fault under certain circumstances |
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- removed unused field WATR |
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o bug fix in exf-package: |
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- u/vwind are defined at tracer/pressure points. The values of u/vwindmask |
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now reflect that. |
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o small fixes in the cal-package: |
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- set reference date to first of January for the 'model'-calendar |
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- failing of cal_CheckDate in cal_FullDate now actually results in a |
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warning |
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o small modifications in exf-package to increase flexibility: |
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- change climtempfreeze from a constant to a runtime parameter that |
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is specified in data.exf_clim (default = -1.9) |
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- introduce runtime parameter windstressmax (default = 2.0) that is |
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specified in data.exf |
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o fix in pkg/thsice: |
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- update Evap (Tsf changes) to be consistent with Latent heat flux |
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- maintain snow precipitation unchanged (even if Tsf >=0). |
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both affect global_ocean.cs32x15/(.thsice) results ; update output.txt.thsice |
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checkpoint52m_post |
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o commented out call to cal_GetMonthsRec in swfrac.F and added some comments; |
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this does not change any of the results, because myIter=0 in swfrac always |
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lead to jwtype=2 (the default anyway), but the call makes little sense |
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as a default |
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o no SHORTWAVE HEATING lost at the bottom; affects lab_sea output; updated |
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o re-work pkg/thsice interface with ocean & bulk_force pkg to allow |
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atmospheric model (AIM) to use it ; add a "slab ocean" component. |
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o pkg/aim_v23 : add interface to call thermodynamic sea-ice (thsice) |
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o update global_ocean.cs32x15/output (.thsice) after changes in pkg/thsice |
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o extending useSingleCpuIO option to work with new exch2 I/O format |
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- old-style, missing-tile I/O is still accessible by defining CPP |
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option MISSING_TILE_IO in pkg/mdsio/MDSIO_OPTIONS.h |
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o monitor package can write to NetCDF files and/or STDOUT |
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o fix re-definition bug in MNC_GRID_INIT_ALL() |
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o doc/api_reference added |
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- a framework for building an API Reference Manual using all |
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the "protex" comments embedded in the code |
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- see pkg/generic_advdiff, pkg/mnc for examples |
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o MNC: |
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- make myThid the last argument for all subroutines |
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- new default for the grid files: NO halos |
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- add useMNC and other run-time flags |
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- separate per-file-group handling of the unlimited dimension |
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- early initialization of MNC w/ flags read at the eeboot stage |
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and lookup tables set in initialize_fixed |
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- write all MNC output to a freshly-created directory |
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o thermodynamics sea-ice (thsice) is now tested with testreport. |
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o test exp. advect_cs: use the standard cs32 grid ; update output. |
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o Added functionality to grdchk: |
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pick global i,j,k position (or nearest wet) where to perform check. |
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checkpoint52l_post |
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o new land formulation: |
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a) use ground enthalpy as prognostic variable to ensure exact |
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energy conservation. |
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b) account for water temperature and for latent heat of freezing |
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in all processes (rain, run-off, ground storage) |
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c) compute surface and ground temperature implicitly. |
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o aim_v23 modification for new land model: |
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a) Treat separately land / ocean / sea-ice surface fluxes |
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to allow implicit computation of land & sea-ice surface temp. |
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b) add snow precipitation. |
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checkpoint52l_pre |
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o fix problem (when 1 tile is empty) in min/max monitor. |
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o fix bug in timeAve (u,vZetatave in common block) |
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o no restoring terms under ice for pkg/seaice |
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o moved SEAICE_DO_DIAGS to S/R do_the_model_io |
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o bug fix for pkg/seaice pickups |
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o change MNC call locations and add coordinate attributes |
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o mask vorticity at the corner ; affects global_ocean.cs output |
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o fix ini_curvilinear_grid ; test CS experiments with mpi |
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o aim.5l_cs: modify sea-ice fraction input file ; update output |
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o exf: Adding simple range check routine for exf fields after read |
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checkpoint52k_post |
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o removed top-level directory "diags" |
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- we migrated these functions to pkg/timeave a long time ago |
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o fixed bug introduced in pkg/monitor |
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o accuracy ctrlprec = 32 insuffient for gradient checks using |
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averaged fields (I/O via cost_averages) |
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-> use ctrl.h in active_file*.F to control I/O precision. |
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o paramter list of CALL ADTHE_MAIN_LOOP |
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o added initial do_the_model_io to ecco |
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o set all ...Freq to zero after cost_final |
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taveFreq, dumpFreq, pChkptFreq |
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o MAIN and ECCO differentiability restored |
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checkpoint52j_post |
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o fix nchklev in tamc.h for global_ocean... |
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o Bringing flow and store directives up-to-date |
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o Really weird thing! |
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call do_the_model_io from the_main_loop with parameters |
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starttime, niter0, instead of mytime, myiter, screws up the adjoint: |
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TAF places a faulty re-call of initialise_varia |
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after cost_final call which should not be there! |
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checkpoint52j_pre |
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o tweaked pkg/mdsio/mdsio_readfield.F to have more useful logic and |
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error messages |
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o fix errorMessageUnit problem. remove old version of mdsio from eesup/src |
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o modified pkg/mdsio/mdsio_readfield.F -- commented out diskspace-eating |
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debug output |
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o modfied mdsio_writefield.F to handle non-global files under exch2 |
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o update AIM Cubed-Sphere exp (aim.5l_cs): |
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use land, p*, and Franco.M forcing fields with fractional land-sea mask. |
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o update AIM Equatorial Channel exp: |
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use standard aim_v23 pkg and change the SST fields to be more realistic. |
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o globalFile now works with exch2 |
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o merged mom_vi_calc_relvort3.F, mom_vi_del2uv.F and |
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mon_vort3.F to make exch2 friendly with >1 tile per cube face |
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o limit timeave output for hi-res integrations |
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checkpoint52i_post |
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o removed CPP_EEOPTIONS.h from verification/*/code |
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o updated the tiling for global_ocean_pressure |
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checkpoint52i_pre |
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o update aim.5l_LatLon using the standard aim_v23 pkg (instead of |
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the old pkg/aim). |
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checkpoint52h_pre |
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o shortened offending lines in exch2_send_rx?.template |
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o modified W2_EXCH2_TOPOLOGY.h to reflect current topology generator |
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o genmake2: add build & execute test for NetCDF code |
o genmake2: add build & execute test for NetCDF code |
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o modded aim.5l_cs and global_ocean.cs32x15 to use exch2, removed |
o modded aim.5l_cs and global_ocean.cs32x15 to use exch2, removed |
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old grid files, moved CPP_EEMACROS.h to pkg/exch2 |
old grid files, moved CPP_EEMACROS.h to pkg/exch2 |
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o added useSingleCPUIO flag to monitor.F and mon_out.F |
o added useSingleCPUIO flag to monitor.F and mon_out.F |
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o added temporary hack for sea-ice dynamics on the cube: |
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metric terms are ignored and it is assumed that |
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there is no sea-ice on cube faces 1, 2, 4, and 5. |
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checkpoint52f_post |
checkpoint52f_post |
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o added exch2 cube routines to pkg/exch2 |
o added exch2 cube routines to pkg/exch2 |
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