4 |
Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
5 |
============================== |
============================== |
6 |
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7 |
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o model: |
8 |
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- add new 2-d forcing field for time-dependent geopotential anomaly (e.g., |
9 |
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tidal forcing), in m^2/s^2 ; add run-time param to allow to turn it off. |
10 |
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o eesupp/src: |
11 |
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- shift standardMessageUnit in eeboot.F and I/O units in mdsfindunit.F |
12 |
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for coupling to GEOS AGCM: HACK_FOR_GMAO_CPL option in CPP_EEOPTIONS.h |
13 |
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|
14 |
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checkpoint66k (2017/09/20) |
15 |
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o model/src: |
16 |
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- add missing CPP brackets (ALLOW_COST, ALLOW_CTRL in load_fields_driver.F |
17 |
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and the_model_main.F) |
18 |
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o ctrl: |
19 |
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- use zeroRL in place of fc when ALLOW_COST is not compiled (in ctrl_pack.F) |
20 |
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- call MDS_READ_FIELD / MDS_WRITE_FIELD instead of deprecated |
21 |
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mdsreadfield / mdswritefield (in ctrl_get_gen.F, ctrl_map_ini_gen.F, |
22 |
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ctrl_map_ini_genarr.F, and ctrl_map_ini_gentim2d.F ) |
23 |
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o eesupp: |
24 |
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- add CPP option to activate some pieces of code for coupling to GEOS AGCM; |
25 |
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- shift commonly used IO unit (in eeboot.F) for coupling to GEOS AGCM. |
26 |
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o pkg/bling: |
27 |
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- bling_production: Fix typo in calcium carbonate uptake. Also rearranging |
28 |
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and cleaning |
29 |
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o model/src: |
30 |
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- move k loop inside correction_step.F (+ update calling S/R) |
31 |
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- collect implicit pressure gradient tendencies in local 2-D array; |
32 |
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affect results (at machine truncation level) when using 3-D solver; update |
33 |
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output of exp.: exp4 (x1), global_ocean.cs32x15 (x2),hs94.cs-32x32x5.impIGW, |
34 |
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rotating_tank, short_surf_wave,tutorial_deep_convection (x2) |
35 |
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& tutorial_plume_on_slope. |
36 |
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|
37 |
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checkpoint66j (2017/08/15) |
38 |
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o pkg/ptracers: |
39 |
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- fix surface forcing under ice-shelf (useShelfIce=T). |
40 |
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o pkg/atm_phys: |
41 |
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- use hFac weighted average when applying A-grid atm-phys momentum tendency |
42 |
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to C-grid dynamics; this ensures wind-stress match mom tendency. |
43 |
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o eesupp/src: |
44 |
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- change default for opening scratch files to avoid STATUS='SCRATCH' |
45 |
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- close scratch files with STATUS='DELETE' |
46 |
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- changes affect eeset_parms.F and open_copy_data_file.F and many routines |
47 |
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that read namelists (because they close the scratch files) |
48 |
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- you can revert to old default by setting USE_FORTRAN_SCRATCH_FILES |
49 |
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in CPP_EEOPTIONS.h (tested in ideal_2D_oce/code & lab_sea/code_ad) |
50 |
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o pkg/atm_phys: |
51 |
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- fix unset arguments in (unused) S/R surface_flux_0d. |
52 |
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o eesupp/src: |
53 |
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- add argument "procId" to S/R EESET_PARMS to fix scratchFile1 & 2 setting |
54 |
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(case TARGET_BGL or TARGET_CRAYXT) for early call (from eeboot_minimal.F): |
55 |
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called with myProcId in eeboot.F and with mpiMyWId in eeboot_minimal.F |
56 |
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o pkg/streamice: |
57 |
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- remove blank between _EXCH_XY_RL and "()", which my Apple Xcode |
58 |
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preprocessor /usr/bin/cpp cannot interpret; 3 instances in total in |
59 |
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streamice_driving_stress_fd.F and streamice_advect_2dtracer.F |
60 |
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o pkg/diagnostics: |
61 |
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- new option to allow to cumulate thickness-factor (hFac) weighted field |
62 |
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(if field permitted); implemented by changing sign of "jdiag" pointer |
63 |
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(> 0: cumlulate field, < 0: cumulate hFac weighted field). |
64 |
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a) restricted to 3-d (Nr levels), level centered diagnostics at U,V or Cell |
65 |
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center position (gcode(2)='U','V','M' & gcode(3,5,9:10)='R',' ','MR') |
66 |
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b) for now, activated by setting fileFlags 3rd character to 'h'. |
67 |
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|
68 |
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checkpoint66i (2017/07/18) |
69 |
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o pkg/cheapaml: |
70 |
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- add parameter "useRelativeWind", default set to False; this change the |
71 |
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previous setting which was always using relative wind. |
72 |
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o add hooks for the Parallel Data Assimilation Framework PDAF |
73 |
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(http://pdaf.awi.de/) in eeboot_minimal.F and the_main_loop.F; |
74 |
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to use set CPP-flag USE_PDAF in CPP_EEOPTIONS.h |
75 |
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o pkg/exf: |
76 |
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- interpolation of vector fields (exf_interp_uv.F): fix bug in calculation |
77 |
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of South-Pole mean value. |
78 |
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- interpolation near the poles, case where second additional row is at the |
79 |
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pole (or beyond the pole and moved to the pole): change first addition row |
80 |
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value to a linear interpolation between pole and 1rst (S.pole)/last (N.pole) |
81 |
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row (instead of just a copy of it). |
82 |
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o pkg/seaice: |
83 |
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- prevent JFNK and KRYLOV solvers from trying to reduce a residual of 0 |
84 |
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- add the option to compute no-slip du/dy, dv/dx (i.e. |
85 |
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the offdiagonal strain rate e12) by a second order approximation |
86 |
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on the boundary; works only with JFNK, KRYLOV, or EVP solvers, because |
87 |
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it is too messy to implement for the implicit LSR matrix. |
88 |
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SEAICE_2ndOrderBC = .FALSE. by default |
89 |
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|
90 |
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checkpoint66h (2017/06/02) |
91 |
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o pkg/seaice: |
92 |
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- add new routines to compute stress tensor components and stress tensor |
93 |
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divergence to be reused in s/r seaice_lsr and s/r seaice_calc_lhs |
94 |
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- change names of diagnostics SIsigI/II (commonly used for invariants) |
95 |
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to SIsig1/sig2 (more common for principal components) to avoid confusion |
96 |
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o pkf/exf: |
97 |
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- add a stop if useRelativeWind with un-updated uwind/vwind (e.g., constant); |
98 |
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similarly, stop if rotateStressOnAgrid with constant wind-stress. |
99 |
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o pkg/seaice: |
100 |
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- remove (comment out) diagnostics SIuwind,SIvwind,SIfu,SIfv (duplicate of |
101 |
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EXFuwind,EXFvwind,oceTAUX,oceTAUY) and point them to their equivalent. |
102 |
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- add diagnostics of wind-stress over seaice (SItaux,SItauy) and seaice |
103 |
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fraction weighted wind stress over ocean+seaice (SIatmTx,SIatmTy). |
104 |
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o pkg/diagnostics: |
105 |
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- small piece of code to rename (old) diagnostics, when namelist is processed. |
106 |
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o model/src: |
107 |
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- new run-time param (useMin4hFacEdges) to select method for setting hFacW,S: |
108 |
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originally, set as minimum of adjacent hFacC factor ; now (new default) |
109 |
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computed from rSurfW,S and rLowW,S by applying same rules as for hFacC. |
110 |
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Only matters when useShelfIce=T with particular ice-shelf cavity geometry. |
111 |
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o pkg/seaice: |
112 |
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- add momemtum advection, off by default, still in test phase |
113 |
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most of the momentum advection code is adapted and reused from mom_vecinv |
114 |
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o pkg/mom_vecinv: |
115 |
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- pass these runtime flags: |
116 |
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selectVortScheme, highOrderVorticity, upwindVorticity, useJamartMomAdv |
117 |
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as formal parameters to s/r mom_vi_u/v_coriolis, mom_vi_u/v_coriolis_c4, |
118 |
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so that these routines can also be used in pkg/seaice. |
119 |
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|
120 |
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checkpoint66g (2017/04/24) |
121 |
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o model/src: |
122 |
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- more robust ordering of column thickness integral (=Sum_k(drF*hFac) ) |
123 |
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to get same expression (regarding machine truncation) in different places |
124 |
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in ini_masks_etc.F (e.g., rSurfC,W,S is now exactly zero when it should). |
125 |
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Update forward output of experiments: global_ocean.cs32x15 (all 5 except |
126 |
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viscA4), isomip (x3), tutorial_global_oce_in_p & tutorial_plume_on_slope. |
127 |
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o pkg/shelfice: |
128 |
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- ALLOW_SHIFWFLX_CONTROL: move setting of maskSHI from shelfice_update_masks.F |
129 |
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to shelfice_init_fixed.F |
130 |
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- change S/R SHELFICE_UPDATE_MASKS to SHELFICE_INIT_DEPTHS (still called from |
131 |
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ini_masks_etc.F for now) to update ocean upper boundary position according |
132 |
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to ice-shelf topography (instead of directly updating hFacC). |
133 |
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o model/src: |
134 |
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- move call to CTRL_INIT & CTRL_ADMTLM from the middle to the bottom of |
135 |
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packages_init_fixed.F to allow other pkgs to set mask and weight fields. |
136 |
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|
137 |
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checkpoint66f (2017/04/06) |
138 |
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o model/src: |
139 |
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- add specific run-time param to select level of printed plot-field-maps, |
140 |
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set by default to debugLevel. Remove internal param "printDomain". |
141 |
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o pkg/seaice: |
142 |
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- add flag to add snow mass to seaiceMassC/U/V, the default is |
143 |
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SEAICEaddSnowMass=.FALSE., not to change previous results |
144 |
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o pkg/bling |
145 |
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- Bug fix in bling_production regarding unit conversion for diagnostics |
146 |
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being put in the wrong place |
147 |
|
o model/src: |
148 |
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- add back recomputation of rSurfW & S to ensure consistent column thickness |
149 |
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(needed for rStar) between Sum_k(hFac*drF) and rSurf-rLow, for now only |
150 |
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when using pkg/shelfice; was initially added on 2012/06/01 (ini_masks_etc.F |
151 |
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revision 1.51) but was removed accidentally on 2014/02/08 (v1.53). |
152 |
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o pkg/autodiff: |
153 |
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- clean-up "checkpoint.flow" |
154 |
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o pkg/rw (Contribution from Jody Klymak): |
155 |
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option to set mds file suffix as function of time in simulation: |
156 |
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*) new input parameter "rwSuffixType" (read from PARM03 namelist) |
157 |
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to select file suffix format; by default (=0), use iteration number; |
158 |
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*) add simple routine to return file suffix according to rwSuffixType; |
159 |
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*) in model/src and in most pkgs (except: atm2d, fizhi, regrid & streamice), |
160 |
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use new S/R to get file suffix, except for debug output file (diagFreq) |
161 |
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and pkgs offline & rbcs input files. |
162 |
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o pkg/rw: |
163 |
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- uniform processing of "I10" suffix across writing fld routines; used to |
164 |
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simplify debug writing of cg2/3d_b/x in solve_for_pressure.F & post_cg3d.F |
165 |
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(similar to cg3d.F, cg3d_ex0.F) |
166 |
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o pkg/mom_vecinv: |
167 |
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- highOrderVorticity in selectVortScheme=2 case: fix c4 coeff in splitted |
168 |
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vorticity flux (keep same sum in case vBarXm=vBaXp, uBarYm=uBarYp). |
169 |
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o pkg/bling: |
170 |
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- Many small changes intended to clean the code. |
171 |
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Unnecessary ADJOINT_SAFEs removed ; |
172 |
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removed BLING_COST.h BLING_CTRL.h bling_cost.F ; |
173 |
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diagnostics added. |
174 |
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|
175 |
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checkpoint66e (2017/03/14) |
176 |
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o pkg/exf: |
177 |
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- interpolation with #undef EXF_INTERP_USE_DYNALLOC: move buffer size |
178 |
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definition outside EXF_PARAM.h in new header file: EXF_INTERP_SIZE.h; |
179 |
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use fixed size buffer (passed to S/R EXF_INTERP & EXF_INTERP_UV) to |
180 |
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avoid any dynamic allocation ; |
181 |
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- S/R EXF_CHECK: add new check & stop when file-name is defined but not |
182 |
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read-in ; add warning when file is read-in but not used within pkg/exf ; |
183 |
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+ check for buffer-size (if #undef EXF_INTERP_USE_DYNALLOC). |
184 |
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- update exf_summary.F (print {FLD}RepCycle). |
185 |
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o verification/global_with_exf: |
186 |
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- switch on exf interpolation in AD test (just like the forward test) |
187 |
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o pkg/mom_vecinv: |
188 |
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- add storage directives to avoid recomputations within mom_vecinv.F |
189 |
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which were generating seg. fault with gfortran -devel |
190 |
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o pkg/ctrl, pkg/smooth: |
191 |
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- initialize array halos which were generating seg. fault with |
192 |
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gfortran -devel in adjoint mode |
193 |
|
o pkg/exf: |
194 |
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- for each input field, enable to specify a field specific repeat-cycle |
195 |
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({FLD}RepCycle) which defaults to pkg/exf main "repeatPeriod". |
196 |
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o verification/lab_sea: |
197 |
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- update AD results of primary test and noseaicedyn test after switching |
198 |
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to new version of TAF (5.3.13 vs 5.3.2 before); agreement with gradient |
199 |
|
check stays about the same. |
200 |
|
o pkg/exf: |
201 |
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- fix bug in exf_zenithangle.F for cases select_ZenAlbedo > 0 with useCAL=T. |
202 |
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- exf_check: MAX_LAT_INC need only be "loc_nlat-1", not equal to loc_nlat |
203 |
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o pkg/bling, USE_EXFCO2 code: |
204 |
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- add parameter "apco2RepCycle" (set to pkg/exf "repeatPeriod" by default); |
205 |
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- update calls to EXF S/R (use new version: EXF_INIT_FLD & EXF_SET_FLD). |
206 |
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o pkg/exf: |
207 |
|
- rename S/R EXF_INIT to EXF_INIT_VARIA ; |
208 |
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- add arguments: fldName (for debug msg) and fldRepeatCycle (set to |
209 |
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repeatPeriod) to S/R EXF_SET_UV and to S/R EXF_SET_GEN (renamed EXF_SET_FLD) |
210 |
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and update calls in pkg/exf calling S/R (exf_getffields.F & exf_getclim.F) ; |
211 |
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- add argument: fldName (for debug msg) to S/R EXF_INIT_GEN (renamed |
212 |
|
EXF_INIT_FLD) and update calls in exf_init_varia.F |
213 |
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- For now, for backward compatibility, keep a simplified version of S/Rs |
214 |
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EXF_SET_GEN & EXF_INIT_GEN in file exf_set_gen.F |
215 |
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- add and pass new arguments: fldName (for debug msg) and fldRepeatCycle |
216 |
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to S/R EXF_GetFFieldRec ; update calls in pkg/obcs/obcs_exf_load.F |
217 |
|
o tools/genmake2: |
218 |
|
- replace "bc -l" (only used once) by "expr" (already used). |
219 |
|
o verification/global_ocean.cs32x15: |
220 |
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- turn off pkg/cal (useCAL=F) in secondary FWD exp. "icedyn". |
221 |
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Note: exf setting (data.exf) can be compared to other exf secondary exp |
222 |
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"seaice" (kept with useCAL=T) which has same time dependent forcing. |
223 |
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|
224 |
|
checkpoint66d (2017/02/13) |
225 |
|
o pkg/exf: |
226 |
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- remove setting of useCAL=T when using pkg/exf (useEXF=T); add warning |
227 |
|
early on (in packages_boot.F) to stress this change in pkg setting. |
228 |
|
- In (most) verification exp. that use pkg/exf, add useCAL=.TRUE. to data.pkg |
229 |
|
o model/src: |
230 |
|
- move call to ecco_phys to end of time step; this may induce minor |
231 |
|
cost function changes by shifting time averages by one time step |
232 |
|
for some variables; this revision resulted in changed adjoint results |
233 |
|
in MITgcm_contrib/verification_other/global_oce_cs32 |
234 |
|
o pkg/exf: |
235 |
|
- Change EXF_READ_EVAP to only activate code within #ifdef ALLOW_ATM_TEMP ; |
236 |
|
this prevents to read evap when ALLOW_ATM_TEMP is undef and other fields, |
237 |
|
e.g. precip, are not available. |
238 |
|
o pkg/flt: |
239 |
|
- flt_init_varia.F: use pickupSuff if specified |
240 |
|
- add code (within #ifdef DEVEL_FLT_EXCH2) and test case as a first, |
241 |
|
intermediate, step towards completing pkg/exch2 support within pkg/flt; |
242 |
|
ifdef DEVEL_FLT_EXCH2 then: |
243 |
|
- flt_init_fixed.F: comment out stop |
244 |
|
- flt_exch2.F: conserve ipart, jpart (grid coordinates) |
245 |
|
- exch2_recv_get_vec.F: transform ipart, jpart (grid coordinates) |
246 |
|
- flt_mapping.F: attempt to fix longitude diagnostic near date-line |
247 |
|
- flt_init_varia.F: hack initialization (for testing purposes w. LLC90) |
248 |
|
o tools/genmake2 & pkg/pkg_depend: |
249 |
|
- define new type of pkg dependency rule ("=pkg_x"), less strict than |
250 |
|
the "+" rule, that add the dependent pkg (pkg_x) unless it's disabled |
251 |
|
(-pkg_x in packages.conf). |
252 |
|
- change pkg/exf dependency rule from "exf +cal" to "exf =cal"; |
253 |
|
- add "+cal" to dependency list of pkg/ecco (needed to compile). |
254 |
|
- simplify FWD experiment "offline_exf_seaice" by removing pkg/cal. |
255 |
|
o utils/matlab: |
256 |
|
- adding ocean_basin routines for defining basin masks. |
257 |
|
o pkg/exf: |
258 |
|
- new S/R EXF_GETFFIELD_START replacing EXF_GETFIELD_START, but with more |
259 |
|
arguments, allowing to check (and stop) if parameter setting of |
260 |
|
{FLD}startdate1 & date2 and of {FLD}StartTime are consistent with |
261 |
|
useCAL= T or F. For now, kept a simplified version of EXF_GETFIELD_START |
262 |
|
for backward compatibility. |
263 |
|
- change accordingly calls in exf_init_fixed.F + default {FLD}StartTime in |
264 |
|
exf_readparms.F ; apply same changes to pkg/icefront (for SGRunOff field). |
265 |
|
o pkg/bling (USE_EXFCO2 code): |
266 |
|
- fix missing setting of apco2StartTime according to apco2startdate1 & date2 |
267 |
|
by adding a call to S/R EXF_GETFFIELD_START. |
268 |
|
o pkg/exf: |
269 |
|
- allows to compile without pkg/cal (but disabled by current dependency |
270 |
|
rules, i.e., default "pkg/pkg_depend"). Minimal changes to enable to |
271 |
|
run with useCAL=F ; this involves setting directly {FLD}StartTime instead |
272 |
|
of {FLD}startdate1 & date2 ; consistency check not yet coded. |
273 |
|
o verification/global_ocean.cs32x15: |
274 |
|
- fix all data.exf for a shift of 1 day in all field startdate1 so that it now |
275 |
|
corresponds to middle of 1rst month; update outputs (2 fwd + 3 adm + 3 tlm). |
276 |
|
o pkg/exf: |
277 |
|
- allow to use EXF_ZENITHANGLE without pkg/cal + simplify (saving some |
278 |
|
calculations); change FWD experiment global_ocean.cs32x15 |
279 |
|
(#define ALLOW_ZENITHANGLE) to test/check that this code compiles. |
280 |
|
o pkg/exf: |
281 |
|
- In preparation for addition to NAMELIST, rename internal (_RL) parameter |
282 |
|
{FIELD}startdate to {FIELD}StartTime |
283 |
|
Note: new name also fit better the content, i.e, a start time in second. |
284 |
|
o eesupp/src: |
285 |
|
- add 1 argument to S/R EEBOOT & EEBOOT_MINIMAL for interface with ESMF |
286 |
|
o pkg/exf: |
287 |
|
- add option ALLOW_READ_TURBFLUXES (and corresponding set of parameters) |
288 |
|
to allow to read-in Sensible & Latent Heat flux ; |
289 |
|
- simplify pkg/exf main options: |
290 |
|
1) move small piece of code (case ALLOW_ATM_TEMP undef) out of |
291 |
|
exf_bulkformulae.F into exf_wind.F so that exf_bulkformulae.F is |
292 |
|
compiled only when both ALLOW_ATM_TEMP & ALLOW_BULKFORMULAE are defined; |
293 |
|
2) make call to EXF_RADIATION and to EXF_WIND independent of CPP option |
294 |
|
ALLOW_BULKFORMULAE which now only applies to S/R EXF_BULKFORMULAE ; |
295 |
|
3) improve options documentation in EXF_OPTIONS.h. |
296 |
|
o pkg/ecco: |
297 |
|
- cost_gencost_customize.F,ecco.h,ecco_phys.F,ecco_readparms.F, and |
298 |
|
ecco_summary.F: add passive tracer cost functions to gencost; |
299 |
|
m_ptracer and m_boxmean_ptracer |
300 |
|
o pkg/ctrl: |
301 |
|
- ctrl_map_forcing.F: pass myIter and myTime to ctrl_map_forcing as input |
302 |
|
parameters; move myIter .EQ. nIter0 inside ctrl_map_forcing; add to list |
303 |
|
of implemented gentim2d contol parameters: xx_qnet, xx_empmr, xx_qsw, |
304 |
|
xx_sst, xx_sss, xx_pload, xx_saltflux, xx_fu, xx_fv, xx_fe, xx_fn |
305 |
|
o model/src: |
306 |
|
- forward_step.F: pass myIter and myTime to ctrl_map_forcing as input |
307 |
|
parameters; move myIter .EQ. nIter0 inside ctrl_map_forcing |
308 |
|
o pkg/exf: |
309 |
|
- exf_getffields.F: add to list of implemented gentim2d contol parameters: |
310 |
|
xx_lwflux, xx_swflux, xx_evap, xx_apressure, xx_areamask |
311 |
|
|
312 |
|
checkpoint66c (2017/01/19) |
313 |
|
o verification: |
314 |
|
- add new option "-src" to testreport to only produce source code (*.f), |
315 |
|
including taf output src code (if using '-adm'/'-tlm' option). |
316 |
|
o pkg/exf: |
317 |
|
- add saltflx :: Net upward salt flux in psu.kg/m^2/s |
318 |
|
o pkg/diagnostics: |
319 |
|
- add run-time variable diagMdsDir to specify a subdirectory for |
320 |
|
diagnostic output when mds is being used and mdsioLocalDir is not. |
321 |
|
o pkg/mnc: |
322 |
|
- mnc_utils.F: edit stop message |
323 |
|
o pkg/autodiff: |
324 |
|
- autodiff_ini_model_io.F: PRINT_MESSAGE, clean-up comments, add _*_MASTER, |
325 |
|
add HAVE_SYSTEM bracket around system call to mkdir |
326 |
|
o pkg/profiles: |
327 |
|
- profiles_findunit.F, profiles_init_fixed.F, profiles_interp.F, |
328 |
|
profiles_readparms.F: call ALL_PROC_DIE before 'stop' |
329 |
|
- profiles_ini_io.F: use PRINT_MESSAGE, clean-up comments, add _*_MASTER, |
330 |
|
add HAVE_SYSTEM bracket around system call to mkdir |
331 |
|
o pkg/smooth: |
332 |
|
- smooth_filtervar2d.F, smooth_filtervar3d.F: call ALL_PROC_DIE before 'stop' |
333 |
|
- smooth_init2d.F, smooth_init3d.F: move print statements to readparms |
334 |
|
- smooth_readparms.F: add cleaner print statements from smooth_init?d.F |
335 |
|
o pkg/exf: |
336 |
|
- check: count errors and stop cleanly at the end (call to ALL_PROC_DIE); |
337 |
|
issue error message when climsst_interpMethod.GT.0 and climsst_lon_inc > 500 |
338 |
|
generalize tests on interpMethod, nlat, and lon_inc to all exf variables. |
339 |
|
- summary: skip detailed field report if not used (empty file-name). |
340 |
|
o tools/xmakedepend: |
341 |
|
- In case line editor "ed" is missing, switch to "sed" command to clean-up |
342 |
|
Makefile from previous dependencies (anything after "# DO NOT DELETE" line). |
343 |
|
o pkg/exf: |
344 |
|
- change definition of "hflux" input file to always include Short-Wave; |
345 |
|
this is now consistent with hflux computation (if using bulk-formulae) |
346 |
|
and hflux diagnostic & documentation (in EXF_FIELDS.h). |
347 |
|
|
348 |
|
checkpoint66b (2016/12/01) |
349 |
|
o model & momentum pkgs: |
350 |
|
- implement fully implicit bottom friction combined with implicit surf. |
351 |
|
pressure, for now, only in hydrostic formulation: |
352 |
|
+ to use: compile with #define ALLOW_SOLVE4_PS_AND_DRAG in CPP_OPTIONS.h |
353 |
|
and run with selectImplicitDrag=2 ; |
354 |
|
+ currently missing diagnostics of bottom drag and vert. viscosity tendency; |
355 |
|
- partial implicit time-stepping (bot. friction + vert. visc first, then |
356 |
|
surf. press) corresponding to selectImplicitDrag=1 should be applicable |
357 |
|
to NH formulation but not available until we solve for surf. pressure |
358 |
|
increment (instead of full etaN). |
359 |
|
- change exp. global_ocean.cs32x15.thsice to test implicit bottom drag |
360 |
|
with implicit vertical viscosity. |
361 |
|
o pkg/seaice: add linear remapping scheme (Lipscomb 2001) to ITD model |
362 |
|
- this is a first version that includes many regularisations that may |
363 |
|
not all be necessary, to be sorted out, |
364 |
|
- turned on by runtime parameter SEAICEuseLinRemapITD (true by default) |
365 |
|
- change one verification experiment in seaice_itd to use and test new code |
366 |
|
- seaice_growth: catch a case where the argument of log can be zero |
367 |
|
or smaller (important for code stability) |
368 |
|
o model/src: |
369 |
|
- modify SOLVE_DIAGONAL_LOWMEMORY version of solve_tridiagonal.F |
370 |
|
& solve_pentadiagonal.F to enable to re-used inverse matrix for solving |
371 |
|
similar A.X'=Y' system (with same matrix A) in subsequent calls; |
372 |
|
switch based on errCode (In/Out) argument value; in calling routines, |
373 |
|
initialise errCode before first call. |
374 |
|
|
375 |
|
checkpoint66a (2016/10/18) |
376 |
|
o pkg/bling: |
377 |
|
- BLING package now loads in atmospheric pCO2 file using exf package routines |
378 |
|
Enable with #define USE_EXFCO2 in BLING_OPTIONS.h |
379 |
|
o model/src & pkg/ptracers: |
380 |
|
- with INCLUDE_IMPLVERTADV_CODE defined, also call MOM_U,V_IMPLICIT_R & |
381 |
|
GAD_IMPLICIT_R (instead of IMPLDIFF) when just implicitViscosity and |
382 |
|
implicitDiffusion (respectively) are used (even without momImplVertAdv |
383 |
|
or temp,salt,PTRACERS_ImplVertAdv). |
384 |
|
o model/src & generic_advdiff: |
385 |
|
- add parenthesis in main diagonal calculation of implicit vertical |
386 |
|
diffusion matrix (impldiff.F & gad_implicit_r.F). |
387 |
|
This affects results at machine truncation level; update output of many |
388 |
|
verification experiments (31 fwd ; 10 adm ; 8 tlm ; 3 oad). |
389 |
|
o pkg/mom_commom & generic_advdiff: |
390 |
|
- add deep atmosphere and anelastic scaling factor in implicit vertical |
391 |
|
advection routines (mom_u,v_implicit_r.F & gad*_impl*_r.F). |
392 |
|
o model/src: |
393 |
|
- remove few unnecessary temp array copies in solve_tridiagonal.F |
394 |
|
& solve_pentadiagonal.F |
395 |
|
|
396 |
|
checkpoint65z (2016/09/28) |
397 |
|
o pkg/seaice: fix multithreading for seaice_fgmres.F |
398 |
|
- remove unecessary variables from common blocks |
399 |
|
- use extra dimension MAX_NO_THREADS for all variables of the Krylov space |
400 |
|
basis, that are stored in commom blocks (including integer variable i1) |
401 |
|
- clean up code a little by removing commented lines that refer to |
402 |
|
original code |
403 |
|
- turn on multi-threaded test for experiment offline_exf_seaice.dyn_jfnk. |
404 |
|
o MITgcm manual: |
405 |
|
- add uptodate pkg/ecco documentation to the manual (section 8.1; ecco.tex), |
406 |
|
preliminary documentation for generic controls (8.3; ctrl.tex), |
407 |
|
a placeholder for smooth (8.4; smooth.tex), and comment out the deprecated |
408 |
|
ecco_costfunction.tex |
409 |
|
o pkg/ecco: |
410 |
|
- update and cleanup list of CCP options |
411 |
|
- re-assign gencost_mask to specify masks rather than gencost_errfile; 'c' |
412 |
|
is now always passed to cost_generic; gencost_mask is now MAX_LEN_FNAM |
413 |
|
- add checks that retired run-time options are not used, and in relation |
414 |
|
to gencost_mask and gencost_errfile |
415 |
|
- finish deprecating gencost_scalefile, gencost_smooth2Ddiffnbt, and |
416 |
|
gencost_nrecperiod |
417 |
|
- fix m_eta computation for virtual salt flux case |
418 |
|
- add m_horflux_vol case (selected via gencost_barfile) that computes |
419 |
|
transports via cost_gencost_boxmean (gencost_flag=-3) |
420 |
|
- use gencost_flag more systematically (i.e., avoid using gencost_name) |
421 |
|
for code switches (aside from physical variable selection) |
422 |
|
o pkg/seaice: make seaice_fgmres.F fit for multithreading; this first |
423 |
|
attempt appears to be a bit of a hack and my need some repair down the road |
424 |
|
o pkg/exf: |
425 |
|
- interpolation near South Pole: fix criteria on input field latitude. |
426 |
|
o pkg/icefront & pkg/exf: |
427 |
|
- move setting of icefront Sub-Glacial RunOff forcing (currently unused) |
428 |
|
from pkg/exf (read from data.exf) to pkg/icefront (read from data.icefront) |
429 |
|
o pkg/exf: |
430 |
|
- replace CPP option ALLOW_EXF_OUTPUT_INTERP with run-time parameter |
431 |
|
"exf_output_interp" (in namelist: EXF_NML_04); change output file name |
432 |
|
(add suffix "_out" instead of a prefix); keep same record number as in |
433 |
|
input file but always write record 1 first (to avoid a STOP in I/O S/R). |
434 |
|
Change output file content by writing interpolated field before applying |
435 |
|
land-sea mask (helpful for debug). |
436 |
|
- 2 compon. vector interpolation with rotation: apply scaling factor on |
437 |
|
each compon. (Eastward and Northward) just before rotation. |
438 |
|
o pkg/bling: |
439 |
|
- Cleaned package. Removed not needed code and comments. |
440 |
|
- adjoint example now works |
441 |
|
(MITgcm_contrib/verification_other/global_oce_biogeo_bling/code_ad) |
442 |
|
o pkg/ptracers: |
443 |
|
- add Bruno Deremble's code to complete the linear surface correction |
444 |
|
for tracer conservation; |
445 |
|
- enabled for individual ptracers by PTRACERS_linFSConserve(iTr)=.TRUE. |
446 |
|
|
447 |
|
checkpoint65y (2016/07/29) |
448 |
|
o pkg/debug (stats): |
449 |
|
- change GLOBAL_SUM to GLOBAL_SUM_TILE (result independent of tile to |
450 |
|
proc/thread mapping); |
451 |
|
- fix Min & Max for case where 1 thread has only empty tiles; |
452 |
|
- use RL variable to count number of wet grid points (with big domain, |
453 |
|
can be too large to fit into integer*4). |
454 |
|
o pkg/monitor: |
455 |
|
- use RL variable to count number of wet grid points (but used only for del2) |
456 |
|
- add new routine to compute Advective CFL within tracer time-stepping with |
457 |
|
writing delayed until next monitor output. |
458 |
|
o pkg/obcs: |
459 |
|
- fix bug in OBCS_BALANCE_FLOW (OBCS_balanceFacN misspelled OBCS_balanceFacW) |
460 |
|
o pkg/cal: |
461 |
|
- calandar-dump: treat case myTime < timePhase in the same way as in |
462 |
|
eesupp/src/diff_phase_multiple.F (when not using calandar-dump). |
463 |
|
o pkg/dic & seaice: |
464 |
|
- fix compilation of ocean component for coupled atm+ocn model with |
465 |
|
seaice dynamics & dic. |
466 |
|
|
467 |
|
checkpoint65x (2016/06/11) |
468 |
|
o add a license text file in main MITgcm tree. |
469 |
|
o added pkg/bling: |
470 |
|
- intermediate complexity biogeochemical model |
471 |
|
- see bling_description.txt for details |
472 |
|
- verification experiment is global_oce_biogeo_bling (for now, in |
473 |
|
Contrib/verification_other/); tested daily on baudelaire with gfortran. |
474 |
|
- add entry point in pkg/gchem for new pkg "bling". |
475 |
|
o pkg/seaice: fix tensile stength computation |
476 |
|
- replace global field tensileStrength by tensileStrFac |
477 |
|
- tensileStrFac can be computed once in S/R seaice_init_varia |
478 |
|
- fortunately that does not affect any verification results |
479 |
|
|
480 |
|
checkpoint65w (2016/05/12) |
481 |
|
o pkg/ctrl/ctrl.h: fix a comma in common block list, so that code compiles |
482 |
|
with ECCO_CTRL_DEPRECATED defined |
483 |
o verification/global_ocean.cs32x15: |
o verification/global_ocean.cs32x15: |
484 |
- change secondary test "viscA4" to also test "selectP_inEOS_Zc=3" |
- change secondary test "viscA4" to also test "selectP_inEOS_Zc=3" |
485 |
with "selectNHfreeSurf=1". |
with "selectNHfreeSurf=1". |
1235 |
just copy level Nr value to level Nr+1. |
just copy level Nr value to level Nr+1. |
1236 |
o doc: |
o doc: |
1237 |
- add notes form Abhisek Chakraborty on how to close Heat & Salt budgets. |
- add notes form Abhisek Chakraborty on how to close Heat & Salt budgets. |
1238 |
o pkg/streamice: |
o pkg/shelfice: |
1239 |
- shelfice_init_varia.F, shelfice_init_fixed.F, shelfice_readparms.F, |
- shelfice_init_varia.F, shelfice_init_fixed.F, shelfice_readparms.F, |
1240 |
SHELFICE.h: move array shelficemass to init_varia, initialise |
SHELFICE.h: move array shelficemass to init_varia, initialise |
1241 |
from array shelficemassinit, which is set in init_fixed and |
from array shelficemassinit, which is set in init_fixed and |