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revision 1.223 by jmc, Sun Dec 14 23:30:13 2003 UTC revision 1.271 by heimbach, Tue Mar 23 19:47:05 2004 UTC
# Line 2  $Header$ Line 2  $Header$
2    
3      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
4      ==============================      ==============================
5    o MNC:
6      - make myThid the last argument for all subroutines
7      - new default for the grid files: NO halos
8      - add useMNC and other run-time flags
9      - separate per-file-group handling of the unlimited dimension
10      - early initialization of MNC w/ flags read at the eeboot stage
11        and lookup tables set in initialize_fixed
12      - write all MNC output to a freshly-created directory
13    o thermodynamics sea-ice (thsice) is now tested with testreport.
14    o test exp. advect_cs: use the standard cs32 grid ; update output.
15    o Added functionality to grdchk:
16      pick global i,j,k position (or nearest wet) where to perform check.
17    
18    checkpoint52l_post
19    o new land formulation:
20      a) use ground enthalpy as prognostic variable to ensure exact
21         energy conservation.
22      b) account for water temperature and for latent heat of freezing
23         in all processes (rain, run-off, ground storage)
24      c) compute surface and ground temperature implicitly.
25    o aim_v23 modification for new land model:
26      a) Treat separately land / ocean / sea-ice surface fluxes
27         to allow implicit computation of land & sea-ice surface temp.
28      b) add snow precipitation.
29    checkpoint52l_pre
30    
31    o fix problem (when 1 tile is empty) in min/max monitor.
32    o fix bug in timeAve (u,vZetatave in common block)
33    o no restoring terms under ice for pkg/seaice
34    o moved SEAICE_DO_DIAGS to S/R do_the_model_io
35    o bug fix for pkg/seaice pickups
36    o change MNC call locations and add coordinate attributes
37    o mask vorticity at the corner ; affects global_ocean.cs output
38    o fix ini_curvilinear_grid ; test CS experiments with mpi
39    o aim.5l_cs: modify sea-ice fraction input file ; update output
40    o exf: Adding simple range check routine for exf fields after read
41    
42    checkpoint52k_post
43    o removed top-level directory "diags"
44      - we migrated these functions to pkg/timeave a long time ago
45    o fixed bug introduced in pkg/monitor
46    o accuracy ctrlprec = 32 insuffient for gradient checks using
47      averaged fields (I/O via cost_averages)
48      -> use ctrl.h in active_file*.F to control I/O precision.
49    o paramter list of CALL ADTHE_MAIN_LOOP
50    o added initial do_the_model_io to ecco
51    o set all ...Freq to zero after cost_final
52      taveFreq, dumpFreq, pChkptFreq
53    o MAIN and ECCO differentiability restored
54    
55    checkpoint52j_post
56    o fix nchklev in tamc.h for global_ocean...
57    o Bringing flow and store directives up-to-date
58    o Really weird thing!
59      call do_the_model_io from the_main_loop with parameters
60      starttime, niter0, instead of mytime, myiter, screws up the adjoint:
61      TAF places a faulty re-call of initialise_varia
62      after cost_final call which should not be there!
63    checkpoint52j_pre
64    
65    o tweaked pkg/mdsio/mdsio_readfield.F to have more useful logic and
66      error messages
67    o fix errorMessageUnit problem. remove old version of mdsio from eesup/src
68    o modified pkg/mdsio/mdsio_readfield.F -- commented out diskspace-eating
69      debug output
70    o modfied mdsio_writefield.F to handle non-global files under exch2
71    o update AIM Cubed-Sphere exp (aim.5l_cs):
72      use land, p*, and Franco.M forcing fields with fractional land-sea mask.
73    o update AIM Equatorial Channel exp:
74      use standard aim_v23 pkg and change the SST fields to be more realistic.
75    o globalFile now works with exch2
76    o merged mom_vi_calc_relvort3.F, mom_vi_del2uv.F and
77      mon_vort3.F to make exch2 friendly with >1 tile per cube face
78    o limit timeave output for hi-res integrations
79    
80    checkpoint52i_post
81    o removed CPP_EEOPTIONS.h from verification/*/code
82    o updated the tiling for global_ocean_pressure
83    checkpoint52i_pre
84    
85    o update aim.5l_LatLon using the standard aim_v23 pkg (instead of
86      the old pkg/aim).
87    
88    checkpoint52h_pre
89    o shortened offending lines in exch2_send_rx?.template
90    o modified W2_EXCH2_TOPOLOGY.h to reflect current topology generator
91    o genmake2: add build & execute test for NetCDF code
92    o modded aim.5l_cs and global_ocean.cs32x15 to use exch2, removed
93      old grid files, moved CPP_EEMACROS.h to pkg/exch2
94    o added useSingleCPUIO flag to monitor.F and mon_out.F
95    o added temporary hack for sea-ice dynamics on the cube:
96      metric terms are ignored and it is assumed that
97      there is no sea-ice on cube faces 1, 2, 4, and 5.
98    
99    checkpoint52f_post
100    o added exch2 cube routines to pkg/exch2
101    o modified hs94.cs-32x32x5 to use it
102    o added new grid files to hs94.cs-32x32x5
103    checkpoint52f_pre
104    
105    checkpoint52e_post
106    o first attempt to solve vertical advection (momemtum & T,S) Implicitly
107      for now, only implemented with Lax-Wendroff (tracer) and VectInv (mom)
108    o step.1 : rewrite (as in MultiDimAdvec) explicit tracer stepping (gad_calc_rhs.F)
109      to work with implicit vertical advection and AB ;
110    o Implic. vert. advect. implemented with flux-limiter, c2, u3 and c4 scheme.
111    o update output (gad_calc_rhs.F changes affect truncation error) of exp:
112     front_relax, global_ocean .cs32x15 & _pressure, internal_wave, lab_sea, natl_box
113    checkpoint52e_pre
114    
115    o fix bug in impldiff when Nr=1 or Nr=2.
116    o change the albedo in pkg/thsice (as GISS model); update output_thsice.txt
117    o little changes (fftpack, aim/phy_suflux ...) to pass the "checkbounds" test.
118    o fix deltaTfreesurf in update_cg2d.F (left from c45d_post): affects 2
119      ocean exp. that use NLFS: global_ocean.cs32x15 & global_ocean_pressure
120    o added exf_offset_atemp for Celsius to Kelvin conversion of atemp
121    o eesupp/inc/EEPARAMS.h: MAX_NO_PROCS=1024
122    o pkg/cal/cal_toseconds.F fix for long (>60 years) integrations
123    
124    checkpoint52d_post
125    o re-tiled many expts to allow comparison in multi-processor mode
126      - updated output accordingly
127      - changed hs94.128x64x5 to use intial T from file rather than use the
128        random number generator
129    o add infrastructure in model routines for fizhi and gridalt packages
130  o change global_ocean.cs32x15 because of Pb with GM on CS-grid.  o change global_ocean.cs32x15 because of Pb with GM on CS-grid.
131  o changes to permit hi-res, cubed-sphere, configuration  o changes to permit hi-res, cubed-sphere, configuration
132    - added useSingleCpuIO capability to mdsio_readfield.F and exf_interp.F    - added useSingleCpuIO capability to mdsio_readfield.F and exf_interp.F
# Line 17  o changes to permit hi-res, cubed-sphere Line 141  o changes to permit hi-res, cubed-sphere
141  o packages pickup: $PKG_write_pickup called from packages_write_pickup ;  o packages pickup: $PKG_write_pickup called from packages_write_pickup ;
142     but call to $PKG_read_pickup remains in $PKG_ini_vars: change CD_code     but call to $PKG_read_pickup remains in $PKG_ini_vars: change CD_code
143     to conform to the common rule.     to conform to the common rule.
144    o check-in the first version of the coupler + interfaces for multi-components
145       set-up (Chris's version, adapted to work on cubed-sphere grid); use MPI.
146       - imply modification in eesupp (MPI_COMM_MODEL < MPI_COMM_WORLD).
147       - atmosphere: use pkg aim_v23 ; no sea-ice for now.
148       - ocean and atmos. share the same horizontal grid (no interpolation).
149       - exchanges between component and coupler is done in forward_step
150    o new verification experiment, cpl_aim+ocn:
151       coupled ocean - AIM atmosphere on cs32 grid.
152    
153  checkpoint52d_pre  checkpoint52d_pre
154  o surface flux time-av diagnostic modified for NLFS & RealFreshWater  o surface flux time-av diagnostic modified for NLFS & RealFreshWater

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