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revision 1.2078 by gforget, Mon Oct 6 14:12:28 2014 UTC revision 1.2087 by jmc, Tue Nov 4 18:24:46 2014 UTC
# Line 4  $Name$ Line 4  $Name$
4      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
5      ==============================      ==============================
6    
7    o pkg/dic: add modifications from Hajoon:
8      - add iron sedimentation flux function of the flux of PO4 out of bottom layer
9      - light attenuation: add self-shading effect by climatological Chlorophyll
10        (read from file).
11    o pkg/seaice/seaice_preconditioner.F : fix cpp flags, so that code also
12        compiles when SEAICE_ALLOW_DYNAMICS is undefined
13    o global_oce_llc90,cs32 : ecco_v4 verification exps now use separate
14        AUTODIFF_OPTIONS.h, CTRL_OPTIONS.h, ECCO_OPTIONS.h rather than
15        ECCO_CPPOPTIONS.h (i.e. replacing the deprecated, circumvoluted,
16        approach where CPP_OPTIONS.h includes an omnipotent
17        ECCO_CPPOPTIONS.h that superseeds pkgs '_OPTIONS.h').
18    o pkg/ctrl/ctrl_map_ini_genarr.F : include GMREDI_OPTIONS.h where
19        ALLOW_3D_KAPGM, ALLOW_3D_KAPREDI (to be added later) belong.
20    o pkg/seaice/SEAICE_SIZE.h : replace ALLOW_AUTODIFF_TAMC with ALLOW_AUTODIFF
21        to avoid needing AUTODIFF_OPTIONS.h anytime SEAICE_SIZE.h is included
22        (it seems that THSICE_SIZE.h, PTRACERS_SIZE.h have the same issue...)
23    o model/src, pkg/smooth, profiles, salt_plume, seaice, exf, ecco, ctrl :
24      add ECCO_OPTIONS.h, AUTODIFF_OPTIONS.h, CTRL_OPTIONS.h when needed
25      - ECCO_OPTIONS.h is needed when including ecco_cost.h, ecco.h
26      - AUTODIFF_OPTIONS.h is needed when including tamc.h, tamc_keys.h
27      - CTRL_OPTIONS.h is needed when including ctrl.h, optim.h, etc
28    o pkg/ctrl,ecco,exf :
29      - remove variables associated with NON-generic costs,
30        unless ECCO_CTRL_DEPRECATED is defined.
31      - remove NON-generic NON-obcs controls,
32        unless ECCO_CTRL_DEPRECATED is defined.
33    o pkg/ctrl : added ctrl_local_params.h
34    o pkg/ecco : added ecco_local_params.h
35    o verification : added ECCO_CTRL_DEPRECATED to most as and oad
36        experiments, which will progressively be removed once the
37        experiments are revised to use only generic controls/costs.
38    
39    checkpoint65f (2014/10/13)
40    o pkg/ctrl, ecco, seaice : minor changes in headers
41    o global_oce_llc90,cs32 : ecco_v4 verification exps now test generic
42        cost function and control capabilities added since checkpoint65c.
43    o pkg/ctrl: regroup all obcs ctrl variables in CTRL_OBCS.h.
44  o pkg/ecco: increase modularity and improve logic  o pkg/ecco: increase modularity and improve logic
45    - ecco_toolbox.F (new) : basic operations that are often used    - ecco_toolbox.F (new) : basic operations that are often used,
46       (for now, ecco_toolbox.F simply contains function ecco_zero).      including ecco_zero, ecco_cp, ecco_cprsrl, ecco_diffmsk,
47        ecco_addcost, ecco_add, ecco_div, ecco_readbar.
48    - cost_gencal.F (new) : determine filnames and records.    - cost_gencal.F (new) : determine filnames and records.
49    - cost_gendif.F (new) : compute masked model-data difference.    - cost_genread.F, cost_generic.F : condense code using ecco_toolbox.
   - cost_genread.F : use ecco_zero to initialize field to 0s.  
50    - cost_generic.F : use spzeroloc rather than hard-coded -9999,    - cost_generic.F : use spzeroloc rather than hard-coded -9999,
51      and exploit the above functions leading to more compact code.      and exploit the above functions leading to more compact code.
52      - cost_genread.F : rm un-necessary arguments, re-arrange args order.
53    - ecco_check.F, ecco_readparms.F : bring logic up to date (using_tpj,    - ecco_check.F, ecco_readparms.F : bring logic up to date (using_tpj,
54      using_ers, using_gfo, using_mdt is now only defined within gencost)      using_ers, using_gfo, using_mdt is now only defined within gencost)
55  o pkg/ecco: extend generic cost capabilities  o pkg/ecco: extend generic cost capabilities
56    - pkg/ecco : added 3D gencost (ALLOW_GENCOST3D), added gencost    - pkg/ecco : added 3D gencost (ALLOW_GENCOST3D), added gencost
57      capabilities via gencost_preproc (+ _c,_i,_r related params),      capabilities via gencost_preproc (+ _c,_i,_r related params),
58      gencost_posproc (+ _c,_i,_r related params), gencost_nrecperiod,      gencost_posproc (+ _c,_i,_r related params), gencost_nrecperiod,
59      gencost_outputlevel arguments to cost_generic      gencost_outputlevel arguments to cost_generic
60    - pkg/ecco/cost_genread.F (new) : interface between cost_generic    - pkg/ecco/cost_genread.F (new) : interface between cost_generic
# Line 34  o pkg/ecco: extend generic cost capabili Line 72  o pkg/ecco: extend generic cost capabili
72    - pkg/ecco/cost_gencost_customize.F : treat case of scatterometer costs    - pkg/ecco/cost_gencost_customize.F : treat case of scatterometer costs
73  o pkg/sea/SEAICE_OPTIONS.h : add ALLOW_COST_ICE, ALLOW_SEAICE_COST_SMR_AREA  o pkg/sea/SEAICE_OPTIONS.h : add ALLOW_COST_ICE, ALLOW_SEAICE_COST_SMR_AREA
74  o pkg/ecco: internal re-organization  o pkg/ecco: internal re-organization
75    - resolve un-necessary dependancies within pkg/ecco and to pkg/ctrl    - resolve un-necessary dependancies within pkg/ecco and to pkg/ctrl
76      (rm includes of optim.h and ctrl.h, replace optimcycle with eccoiter,      (rm includes of optim.h and ctrl.h, replace optimcycle with eccoiter,
77      mv relevant variables definition from ecco_cost.h to ecco.h,      mv relevant variables definition from ecco_cost.h to ecco.h,
78      make sure gencost routines only include ecco.h)      make sure gencost routines only include ecco.h)
79    - throughout : add missing CCP switches, rm unused variables,    - throughout : add missing CCP switches, rm unused variables,
80      and rm un-necessary CPP switches      and rm un-necessary CPP switches
81    - throughout gencost routines : replace modelstartdate with    - throughout gencost routines : replace modelstartdate with
82      gencost_startdate when needed      gencost_startdate when needed
83    - cost_bp_read.F : use arguments, instead of common blocs    - cost_bp_read.F : use arguments, instead of common blocs
84      so that it can be used also by (new) cost_gencost_bpv4.F      so that it can be used also by (new) cost_gencost_bpv4.F
85    - ecco_init_varia.F : initialize RHOsumGlob_0, VOLsumGlob_0    - ecco_init_varia.F : initialize RHOsumGlob_0, VOLsumGlob_0
86    - ecco_phys.F : compute etanFull    - ecco_phys.F : compute etanFull
87    - ecco_readparms.F : rename using_topex as using_tpj, add    - ecco_readparms.F : rename using_topex as using_tpj, add
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