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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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o pkg/seaice |
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- remove unnecessary u/vTmp from subroutine call of |
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seaice_lsr_tridiagu/v |
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- remove some store directives and add new ones in an effort to get |
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finally rid off the recomputation warnings. This is successful |
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when SEAICE_VECTORIZE_LSR ***and*** SEAICE_LSR_ADJOINT_ITER are |
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defined (i.e. no extensive recomputation warnings left), but there |
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are still too many recomputations on the solver iteration level |
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- define SEAICE_VECTORISZE_LSR in offline_exf_seaice/code_ad/SEAICE_OPTIONS.h |
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- move definition of MPSEUDOTIMESTEPS into TAMC-block in |
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SEAICE_SIZE.h |
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- add a store directive in S/R seaice_calc_viscosities |
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o pkg/seaice (ITD code): |
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- fix definition of Hlimit for multi-threaded case |
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- use double precision arithmetic to compute Hlimit: this affects results; |
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update output of experiment seaice_itd. |
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o replace content of verification/seaice_itd |
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- instead of a 1D column use the configuration of offline_exf_seaice |
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to test the ice thickness distribution code with ridging |
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- this is a first shot at this experiment |
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- change of some defaults of ridging parameters SEAICEhStar (from |
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100 to 25) and SEAICEmuRidging (from 5 to 3) in seaice_readparms.F |
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and lot of new comments. |
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checkpoint64y (2014/06/20) |
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o pkg/seaice/seaice_reg_ridge.F: |
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- modify the regularization of very small volumes of ice; only check |
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total volume HEFF, and do not apply correction to individual ice |
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classes because that leads to funny patterns in the heat and fw-fluxes |
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into the ocean. Adjust seaice_itd/results/output.txt |
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- replace nITD by SEAICE_multDim in loop-ranges |
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o pkg/exf: |
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- add code to process the case field period = -12. with UV interpolation. |
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- move debug print (formerly active when exf_verbose=T) from EXF_getFFieldRec |
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into S/R that calls it (i.e., exf_set_gen.F, exf_set_uv.F & obcs_exf_load.F) |
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o verification/global_with_exf: |
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- switch all fields period to -12. (was previously untested) in input/data.exf |
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(but keep secondary test ".yearly" unchanged); update the reference output. |
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o pkg/cal: |
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- new calendar type "noLeapYear" for 365 days calendar without any leap year. |
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o pkg/exf: |
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- new integer parameter "exf_debugLev" (default set to main model debugLevel) |
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to replace logical switch "exf_verbose" |
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- report in STDOUT when loading a new record (if exf_debugLev >= 3) |
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o pkg/sbo: |
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- update from Katherine Quinn: evaluate mass directly from density and SSH |
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(budget using Finite Volume method) instead of from bottom pressure. |
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- allow testreport to collect few selected SBO output ; tested in exp. |
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global_ocean.90x40x15 (after updating the results, to include SBO output). |
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- fix some multi-threading issues (in output part). |
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o model/src & most packages: |
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- always call {PKG}_READPARMS even if corresponding use{PKG}=F; |
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- in {PKG}_READPARMS, in case use{PKG}=F: add a call to new S/R |
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PACKAGES_UNUSED_MSG to print a weak warning when parameter file |
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"data.{pkg}" exist ; and leave the S/R (return) just after. |
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- more standard LAND pkg interface (land_init_fixed.F, land_check.F). |
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+ call LAND_READPARMS from packages_readparms.F |
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o pkg/seaice: |
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- remove code that resets useThSice in S/R seaice_readparms and |
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replace it by a warning in S/R seaice_check |
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- remove parameter MULTDIM, replace with nITD and runtime |
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parameter SEAICE_multDim (still hard-wired to nITD if |
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SEAICE_ITD is defined) |
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checkpoint64x (2014/05/24) |
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o verification/lab_sea: |
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- update adjoint and TLM output following changes to pkg/salt_plume |
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- un-do the update after putting back local recip_Cp in few places. |
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o pkg/salt_plume: modifications by An Nguyen: |
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- add capability to do brine rejection (salt-plume) as function of |
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volume+tracers (instead of only salinity tracer). |
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- conserve volume by exchanging volume from each kLev to above to |
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accommodate in-coming brine volume |
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- store surface and klev exchanged fraction + volume in 4 new 3-d arrays |
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- switch KPP surf buoyancy due to brine forcing to 3-d |
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(3 more 3-d arrays, 2 for SPforcing[T,S], 1 for boplume) |
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- add salt_plume_volfrac, salt_plume_apply, salt_plume_tendency_apply_t |
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- unrelatedly, also add ad-hoc capability to vary salt_plume scheme |
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in East/West Arctic. |
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o pkg/sbo: |
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- incorporate modifications from Katherine Quinn to enable the use of sbo |
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pkg in ECCO-v4 set-up ; remove SBO-TimeAve output ; add monitor-like |
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output for future testreport verification (unfinished). |
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o pkg/atm_phys: |
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- change diagnostics (AtPh_Trf & AtPh_Qrf) of DARGAN_BETTSMILLER S/R: |
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skip the reseting of t_ref & q_ref to initial t & q ; this preserve the |
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output of S/R CAPECALCNEW (Parcel temp & q) for diagnostics. |
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o pkg/seaice |
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seaice_calc_ice_strength.F: modify expression to avoid divisions |
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(affects truncation) |
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seaice_do_ridging.F: clean up the insectarium |
| 98 |
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- fix a bug that was compensated by areaScaling (-> remove areaScaling code) |
| 99 |
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- added SEAICEsnowFracRidge to redistributed snow (2nd bug) |
| 100 |
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- set closing/openingRate to zero where no extra iteration is need (3rd bug) |
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- add some debugging information and error messages (warnings) |
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o model/src: modifications relatd to atmosphere p*: |
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- Switch to more accurate p* coordinate slope term (calc_grad_phi_hyd.F) |
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- With p* or Sigma-P, use constant reference Pot.Temp (thetaConst) instead |
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of vertical profile tRef in geopotential background and anomaly. |
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- Acount for true p* correction in theta <-> T conversion in pkg/aim_v23 |
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and pkg/atm_phys. |
| 108 |
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- Update FWD output of experiments: aim.5l_cs (x2), fizhi-cs-32x32x40, |
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fizhi-cs-aqualev20, fizhi-gridalt-hs, tutorial_held_suarez_cs, cpl_aim+ocn. |
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o pkg/seaice: fix a bug in seaice_prepare_ridging.F, forgot a sqrt |
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o pkg/ptracers: compute ptracer source/sink due to linear free surface. |
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not used right now, but can be used in BGC packages to fix conservation. |
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o pkg/dic, pkg/gchem: move tracer_meanarea to gchem, so it can be used by |
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other packages too. |
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o pkg/seaice/seaice_calc_ice_strength.F: replace SEAICE_rhoSnow by |
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SEAICE_rhoIce in the Rothrock (1975)-type strength calculations (bug fix) |
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o model/src: |
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- since we have several heat capacity (even in model/src), define "recip_Cp" |
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as local variable (no longer in common block) to avoid any confusion. |
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- add thetaConst in PARAMS.h (to be used with pStar or sigma-P coords). |
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o pkg/exf: |
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- from Jeff Scott: add option (#define EXF_CALC_ATMRHO) to calculate local |
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air density as function of air Temp, Humidity and atm pressure. |
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checkpoint64w (2014/05/02) |
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o verification: |
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- update output_adm.txt files for experiment global_ocean.cs32x15 (seaice & |
| 128 |
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seaice_dynmix) and lab_sea (primary test & noseaicedyn): moving/changing |
| 129 |
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code from seaice_growth.F & seaice_advdiff.F to new ridging routines |
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seaice_reg_ridge.F seaice_do_ridging.F affects AD gradient |
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(down to 8-7 matching digits for global_ocean and 5-6 for lab_sea). |
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o model/src: for atmosphere in p* coords: |
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- store factor rStarFacC**atm_kappa (= pStarFacK) in common block |
| 134 |
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- implement more accurate p* coordinate slope term (in calc_grad_phi_hyd.F), |
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but not yet activated. |
| 136 |
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o pkg/seaice: fix restart problem for ITD with new ice strength parameterisation: |
| 137 |
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- move computation of opnWtrFrac = 1-AREA to before computing ice strength |
| 138 |
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- this changes the results (but not for any verification experiment, because |
| 139 |
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none tests this), but avoids having an extra field in the restart files |
| 140 |
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o pkg/seaice: remove global variable TICE (not needed) |
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- replace by TICES or local variable where necessary (cost_seaice_test, |
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seaice_diagnostics_state) |
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- move copying TICE to TICES from seaice_check_pickup to seaice_read_pickup |
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- use specific read/write routines for reading and writing individual leves |
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of a multilevel field |
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o pkg/ctrl & model/inc: |
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- move additional anomaly fields of control vars (related to options: |
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ALLOW_KAPGM_CONTROL, ALLOW_KAPREDI_CONTROL and ALLOW_BOTTOMDRAG_CONTROL) |
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from DYNVARS.h into new header file: CTRL_FIELDS.h |
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o pkg/seaice: some small modifications to the ridging code |
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- make fw2ObyRidge a global variable and add the freshwater flux to |
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seaice_growth |
| 153 |
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- pass actual thickness from seaice_prepare_ridging, so that it is |
| 154 |
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computed only in one place and compute it in the same way as in |
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seaice_growth |
| 156 |
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- initialise more fields in seaice_do_ridging that where cause floating |
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point exceptions over land |
| 158 |
o pkg/seaice: preparations for ridging code and first real ridging code |
o pkg/seaice: preparations for ridging code and first real ridging code |
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- move most of "PART 1" of S/R seaice_growth into a new and separate |
- move most of "PART 1" of S/R seaice_growth into a new and separate |
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S/R seaice_reg_ridge that will both regularize the state variable after |
S/R seaice_reg_ridge that will both regularize the state variable after |
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advection call the actual ridging routine; |
advection call the actual ridging routine; |
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- requires to make 5 fields global fields: d_HEFFbyNEG,d_HSNWbyNEG, |
- requires to make 5 fields global fields: d_HEFFbyNEG,d_HSNWbyNEG, |
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d_AREAbyRLX,d_HEFFbyRLX,saltFluxAdjust; |
d_AREAbyRLX,d_HEFFbyRLX,saltFluxAdjust; |
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- remove ridging code from seaice_advdiff |
- remove ridging code from seaice_advdiff |
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- clean up remaining part 1 of seaice_growth in an attempt to make it |
- clean up remaining part 1 of seaice_growth in an attempt to make it |
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more readable (this is probably subjective) |
more readable (this is probably subjective) |
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- call seaice_itd_redist once in the initialisation phase to have the initial |
- call seaice_itd_redist once in the initialisation phase to have the initial |
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conditions in the correct category |
conditions in the correct category |
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