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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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o useSingleCpuInput separates single-CPU input from single-CPU output |
o verification/MLAdjust: |
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o pkg/seaice/seaice_lsr.F: fix an initialisation bug for the |
- rename secondary test suffix: |
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SEAICE_VECTORIZE_LSR_ZEBRA option that lead to NaNs on a NEC-SX8 |
1.leith -> A4FlxF + switch to flux-form & add side-drag |
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0.leithD -> AhFlxF + switch to flux-form |
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0.smag -> AhVrDv (use Vorticity-Div. visc form) + add side-drag |
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0.leith -> AhStTn (use Strain-Tension visc form) + add side-drag |
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o pkg/mom_vecinv: |
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- remove unused arguments from S/R MOM_VI_HDISSIP & MOM_HDISSIP (as it used |
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to be before mom_calc_visc.F) |
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- skip the call to MOM_CALC_TENSION & MOM_CALC_STRAIN if not needed. |
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- add 2nd copy of vort3 & strain that knows about lateral BC (free/no slip): |
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this is simpler for the adjoint and for diagnostics. |
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o model/src + pkg/momentum: |
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- add input files for 2-D additional Western and Southern cell-edge wall |
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(e.g., to add "thin-wall" where it is =1). |
| 22 |
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- fix sideDrag option for thin-walls with Non-Lin Free-Surf |
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using 2nd hFacZ that is computed from initial (fix domain) hFac |
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- known limitations of thin wall implementation: not yet coded for sigma |
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coords; not working with CD-scheme neither. |
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o pkg/seaice: |
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- rename recently introduced parameters from (wrong name) AB to |
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BDF (backward difference time discretisation) |
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- retire runtime parameters SEAICEuseAB2, SEAICE_abEps |
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o tools/adjoint_options: |
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- remove setting of "OPENAD=true" (now set by command line "genmake2 -oad") |
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checkpoint64t (2014/02/01) |
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o pkg/thsice |
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- corrected store directive fixes thsice adjoint gradient checks |
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o genmake2 & testreport: |
| 37 |
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- add genmake2 option "-oad" to generate a Makefile for OpenAD built and |
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in this case, use tools/adjoint_options/adjoint_oad as default AD optfile. |
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Update testreport accordingly. No need to set "export OPENAD=true" |
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in adjoint_options/adjoint_oad anymore (will be removed later). |
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o pkg/shelfice: |
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- put T & S shelfice forcing into model surfaceForcing_T,_S (for now, |
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only if SHELFICEboundaryLayer=F); Change model/src/external_forcing.F |
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so that surface forcing applies to k=kSurf if using pkg/shelfice. |
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o pkg/ctrl, pkg/grdchk, pkg/ecco: |
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- Changes to make GENARR more modular (i.e. invisible if not used) |
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o model/src/temp_integrate.F and salt_integrate.F |
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- re-include store directives that were removed on Dec 27th. |
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o model/src/external_forcing_surf.F |
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- add storage directives for EmPmR and PmEpR to avoid recomputation of |
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seaice_model in the adjoint that is problematic when seaice_model is |
| 52 |
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turned off in the adjoint. The resolved issue dated back to July when |
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EXTERNAL_FORCING_SURF call was moved. |
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Update global_ocean.cs32x15/*/output_adm.seaice_dynmix.txt accordingly. |
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o pkg/exf/exf_check.F |
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- fix a small bug again (originally found by Wentao Liu, now found again) |
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- streamline error output |
| 58 |
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o pkg/streamice and aim_v23: |
| 59 |
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- replace a few "_EXCH_XY_RL (" with "_EXCH_XY_RL(", so that |
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Apple's /usr/bin/cpp knows what to do: |
| 61 |
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Apple LLVM version 5.0 (clang-500.2.79) (based on LLVM 3.3svn) |
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Target: x86_64-apple-darwin13.0.0 |
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checkpoint64s (2014/01/05) |
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o tools/adjoint_options: |
| 66 |
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- switch to fastopt.net TAF server (instead of default fastopt.de) for |
| 67 |
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AD optfiles adjoint_diva & adjoint_f95 (similar to adjoint_default). |
| 68 |
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o model/src: |
| 69 |
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- remove some unnecessary TAF storage directives in forward_step.F and |
| 70 |
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in dynamics.F (note: not always removed by TAF, e.g., double storage |
| 71 |
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of kappaRU,kappaRV in former version of dynamics.F). |
| 72 |
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o model/src & pkg/ptracers: |
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- call directly GAD_IMPLICIT_R & IMPLDIFF + DWNSLP_APPLY from temp_integrate.F |
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salt_integrate.F and ptracers_integrate.F (instead of from thermodynamics.F) |
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and remove ptracers_dwnslp_apply.F & ptracers_implicit.F |
| 76 |
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- call MATRIX_STORE_TENDENCY_EXP for each tracer (in ptracers_integrate.F) |
| 77 |
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- add fZon & fMer as output argument of S/R GAD_CALC_RHS. |
| 78 |
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- update TAF AD-output of experiments global_ocean.90x40x15 (13 for AD-grad). |
| 79 |
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o useSingleCpuInput separates single-CPU input from single-CPU output; |
| 80 |
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for now only implemented for in exf_interp_read.F |
| 81 |
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o verification/advect_xy: |
| 82 |
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- fix missing EXCH call in local version of ini_salt.F and update output. |
| 83 |
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o momentum diagnostics: |
| 84 |
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- fix which deltaT is used in Total-Tendency diagnostics. |
| 85 |
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- fix typo in diagnostics for momentum tendency from AB. |
| 86 |
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o pkg/seaice/seaice_lsr.F: fix an initialisation bug for the |
| 87 |
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SEAICE_VECTORIZE_LSR_ZEBRA option that lead to NaNs on a NEC-SX8 |
| 88 |
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checkpoint64r (2013/12/08) |
checkpoint64r (2013/12/08) |
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o verification/*/results: |
o verification/*/results: |
| 190 |
o pkg/cost: |
o pkg/cost: |
| 191 |
- define a "final cost function" for each tile, and use GLOBAL_SUM_TILE_RL |
- define a "final cost function" for each tile, and use GLOBAL_SUM_TILE_RL |
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(instead of _GLOBAL_SUM_RL) to get the final cost from all procs & threads: |
(instead of _GLOBAL_SUM_RL) to get the final cost from all procs & threads: |
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o this fixes global-sum value if multi-threads (since GLOBAL_SUM_TILE_RL |
o this fixes global-sum value if multi-threads (since GLOBAL_SUM_RL |
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cannot be applied to var in common block). |
cannot be applied to var in common block). |
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o allows to get results independent of tile-per-proc setting (if using |
o allows to get results independent of tile-per-proc setting (if using |
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slower GLOBAL_SUM_SEND_RECV option). |
slower GLOBAL_SUM_SEND_RECV option). |
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