/[MITgcm]/MITgcm/doc/tag-index
ViewVC logotype

Diff of /MITgcm/doc/tag-index

Parent Directory Parent Directory | Revision Log Revision Log | View Revision Graph Revision Graph | View Patch Patch

revision 1.190 by edhill, Tue Oct 21 15:29:20 2003 UTC revision 1.341 by mlosch, Thu Sep 2 09:21:55 2004 UTC
# Line 3  $Header$ Line 3  $Header$
3      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
4      ==============================      ==============================
5    
6    checkpoint54e_post
7    o add two new packages
8      - pp81 (Packanowski and Philander, 1981), Richardson number and
9        stratification dependent mixing
10      - my82 (Mellor and Yamada, 1982) level 2 turbulence closure scheme
11      - these scheme operate in a similar manner as KPP (without ghat, of
12        course), however there is only one diffusivity that is used for both
13        temperature and salinity (and passive tracers)ç
14    o add offline package
15    o add "verification/dic_example" which contains a dic-gchem-ptracer setup
16      provided by Stephanie Dutkiewicz
17    o genmake2: add ability to search for C compilers and cleanup test output
18      - fixes recent SX-6 problems and should help with others (eg. HP-UX)
19    
20    checkpoint54d_post
21    o data.diagnostics: if levels() is unspecified then ALL levels are diagnosed
22    o bug fix in pkg/cal/cal_addtime.F for TheCalendar='model' day count is wrong,
23      leading to additional shift by 5 days each year of integration
24       (i.e. leading to considerable offset over the years)
25    o update global_ocean.cs32x15/thsice: use z* + RealFW + staggerTimeStep
26    o start with no AB and no initial filtering (staggerTimeStep):
27      change the results of test-exp: hs94.128x64x5, hs94.1x64x5 & hs94.cs-32x32x5
28    o move ocean specific S/R calls from forward_step.F to do_oceanic_phys.F
29      (external loading & cpl import/export stay in forward_step.F)
30    o update coupling interface to work with new staggerTimeStep
31    o change MDSIO ptracers_pickup.
32    o fix a bug in Flux deriv. vs Ts (pkg/aim_v23/phy_suflux_sice.F);
33    o genmake2 fixes so netcdf now works on halem ("osf1_alpha_*")
34    o bugs fixed in kpp_calc.F (ustarY) and external_forcing.F (Qsw & Partial-cell)
35    
36    checkpoint54c_post
37    o replace surfaceTendency U,V,S,T,Tice,Ptr by surfaceForcing U,V,S,T,Tice,Ptr
38      this affects (truncation error) output.txt of test-exp:
39       global_ocean_ebm,_pressure,.cs32x15(&.thsice), lab_sea & natl_box
40    o pkg/kpp: replace pMask by maskC to reduce memory size (one 3.D array)
41    o change Qnet to always be the net heat flux, (+upward).
42      affects (truncation error) output of natl_box exp.: updated
43    o define the max number of passive tracers in PTRACERS_SIZE.h
44    o start to test mnc routinely in exp0
45    o add sea-ice loading (sIceLoad) as a new forcing field.
46    
47    checkpoint54b_post
48    o add testreport "-j JOBS" option for parallel builds (tested and pretty
49       impressive on Altix and Opteron systems)
50    o diagnostics can now write NetCDF files through the mnc package
51    o staggerTimeStep & NLFS: update pkg aim_v23 & thsice; update aim.5l_cs output
52    o staggerTimeStep & multi-Dim-Advec: Exch(U,V) added
53    o staggerTimeStep & NLFS: rescale T & S surface tendencies.
54      affects (truncation error) output of lab_sea & natl_box exp.: updated
55    o change pickup _cd & _ptracers (old pickup restart: usePickupBeforeC54=.T.)
56    
57    checkpoint54a_post
58    o re-write staggerTimeStep: step fwd U,V and then T,S (reverse the order).
59    o change pickup file (to restart from old pickup, set usePickupBeforeC54=.T.)
60    o get a perfect restart when using RealFreshWaterFlux + NLFS (not finished)
61    o update output of all exp. that use staggerTimeStep (except hs94.cs & 2D)
62      + internal_wave (shift in writing cg2d_ini_res)
63    checkpoint54a_pre
64    
65    o require forcing_In_AB=.FALSE. and remove surfaceTendencyTice from pkg/seaice
66      - modified verification/lab_sea and natl_box_adjoint accordingly
67    
68    checkpoint54
69    checkpoint53g_post
70    o prepare splitting of thermodynamics: store convect.counter in common block
71    o store d.etaH/dt (instead of Div.hV) in common ; affects (truncation error)
72      output of: global_ocean.cs32x15, global_ocean_pressure & internal_wave
73    o cnh's modifs to gad_advection.F for cube-sphere multi-dim advection
74    o new parameter "nShapS": allow to treat differently S from T (nShapT)
75    o separate Vert.Advec.Scheme from horizontal Advec.Scheme (T & S)
76    o restore adjointability
77    
78    checkpoint53f_post
79    o modifications that affect AIM experiment results (update output.txt):
80      - no advection of S at top interface Nr (pkg/generic_advdiff)
81      - air surf. temp: use lower value between T0 & T1 (phy_suflux_prep.F)
82    o AIM pkg:
83      - include stability function into surf.Flux derivative relative to Tsurf
84      - calculate clear-sky radiation & surface temp. change (for diagnostics)
85    
86    checkpoint53e_post
87    o merged cylindrical coord configuration
88    o added rotating_tank experiment
89    checkpoint53e_pre
90    
91    checkpoint53d_post
92    o faulks upgraded: re-generate output.txt that have changed:
93       global_ocean.cs32x15(.thsice), global_ocean_ebm, lab_sea, natl_box
94    o Added Bryan and Lewis, 1979, vertical diffusivity profile
95    o pkg/land: fix problem in land_impl_temp.F when Ts arround freezing.
96    o added Sadourny discretization of Coriolis
97      - moved some PARAMETERS from mom_*_coriolis.F to PARAMS.h
98      - re-enabled use of omega3 (useAbsVorticity)
99    o added Leith (Phys. Fluids, 1968, 10, 1409-1416) variable viscosity for
100      vector-invariant equations
101      - note: does *NOT* yet use same variable visc. for no-slip BC's.
102    o recoded the lateral boundary conditions for non-hydrostatic w, this time
103      hopefully without new bugs
104      - still to do: biharmonic friction for non-hydrostatic w
105    o bug fix for mom_*_sidedrag: rA -> rAs,rAw
106    o regenerated output for global_ocean_ebm (using -ieee)
107    o fix mom_common/mom_*_sidedrag.F to recover numeric output prior to creation
108      of mom_common/
109      - simple re-arrangement of instructions within computing loop
110    checkpoint53d_pre
111    
112    checkpoint53c_post
113    o new version of coupler for AIM+thSIce and Ocean models
114     - new fields (SSS,h_MixLayer ...) are exchanged through the coupler
115     - land: change Evaporation of snow
116     - aim with thSIce: fix bug in snow-precip.
117    o changes to calc_gw.F
118     - bug fix for w^2 term near the bottom boundary
119     - (hopefully) improve the lateral slip boundary condtions for use with
120        partial/looped cells
121      - because the bug fix changes two verification experiments anyway (exp5
122        and plume on slope), change the lateral boundary condition from half slip
123        to the value of no_slip_sides
124    o ebm package wasnt quite up to the parallel task. Fixed that.
125    o Adjoint of EBM package + verification
126      * TLM OK
127      * ADM not sufficient accuracy yet (needs further testing)
128    
129    checkpoint53b_post
130    o Commiting new energy balance model to repository
131      * package is pkg/ebm
132      * verif. is verification/global_ocean_ebm
133      * references are in ebm_driver.F
134    C      * X. Wang, P. Stone and J. Marotzke, 1999:
135    C        Global thermohaline circulation. Part I:
136    C        Sensitivity to atmospheric moisture transport.
137    C        J. Climate 12(1), 71-82
138    C      * X. Wang, P. Stone and J. Marotzke, 1999:
139    C        Global thermohaline circulation. Part II:
140    C        Sensitivity with interactive transport.
141    C        J. Climate 12(1), 83-91
142    C      * M. Nakamura, P. Stone and J. Marotzke, 1994:
143    C        Destabilization of the thermohaline circulation
144    C        by atmospheric eddy transports.
145    C        J. Climate 7(12), 1870-1882
146    o Will need long integration testing.
147    checkpoint53b_pre
148    
149    o created pkg/mom_common in preparation for variable viscosity code
150    o renamed and split ini_mnc_io
151    o pkg/land: only liquid water can diffuse or run-off
152    o AIM using land: soil wetness availability account for snow
153    o added printMapIncludesZeros to EEPARMS namelist
154    
155    checkpoint53a_post
156    o restore TAMC compatiility for exf_constants.h
157      (no usage of _d in .h)
158    o Additional storing in KPP in an attempt to fix
159      TAMC problem with adjoint of KPP code.
160      (no success...)
161      Identical code works fine with TAF.
162    o Fixed verification/natl_box_adjoint experiments.
163      Initial conditions for Experiments 4 and 5 are now
164      set to "SEAICE_initialHEFF=0", which is more reasonable,
165      and hence gives results closer to that of Experiment 2.
166      Experiment 6 requires "SEAICE_initialHEFF=1" and is working once again.
167    
168    checkpoint53
169    o stable checkpoint with up to date adjoint
170      TLM tests only run for 1st grdchk at the moment. Its unclear if
171      this is a code problem or a problem with resetting code for g_
172      variables that is being autogenerated wrong.
173      Otherwise:
174       o code is testing well on Linux (P4 and AMD), SGI Alitix and Irix.
175       o IBM and HPQ tests could not be run because NCAR (IBM) and NCCS (HPQ)
176         are both still in chaos following their security messes.
177    
178    checkpoint52n_post
179    o various build (mostly genmake2) changes including:
180      - ability to build/run more easily within Cygwin and MacOS X
181      - more complicated Makefiles with a stronger dependence on Gnu Make
182    o pkg/seaice modifications
183      - added SEAICE_deltaTtherm and SEAICE_deltaTdyn in order to reduce cost
184        of pkg/seaice.  For time being, SEAICE_deltaTtherm = deltaTtracer
185        and SEAICE_deltaTdyn must be integer multiple of SEAICE_deltaTtherm
186      - changed proxy for geostrophic velocity and updated
187        verification/lab_sea/results/* accordingly
188      - removed ADI dynamic solver from pkg/seaice
189      - replaced all occurrences of 1/CSTICE or 1/CSUICE
190        they caused a segmentation fault under certain circumstances
191      - removed unused field WATR
192    o bug fix in exf-package:
193      -  u/vwind are defined at tracer/pressure points. The values of u/vwindmask
194         now reflect that.
195    o small fixes in the cal-package:
196      - set reference date to first of January for the 'model'-calendar
197      - failing of cal_CheckDate in cal_FullDate now actually results in a
198        warning
199    o small modifications in exf-package to increase flexibility:
200      - change climtempfreeze from a constant to a runtime parameter that
201        is specified in data.exf_clim (default = -1.9)
202      - introduce runtime parameter windstressmax (default = 2.0) that is
203        specified in data.exf
204    o fix in pkg/thsice:
205      - update Evap (Tsf changes) to be consistent with Latent heat flux
206      - maintain snow precipitation unchanged (even if Tsf >=0).
207     both affect global_ocean.cs32x15/(.thsice) results ; update output.txt.thsice
208    
209    checkpoint52m_post
210    o commented out call to cal_GetMonthsRec in swfrac.F and added some comments;
211      this does not change any of the results, because myIter=0 in swfrac always
212      lead to jwtype=2 (the default anyway), but the call makes little sense
213      as a default
214    o no SHORTWAVE HEATING lost at the bottom; affects lab_sea output; updated
215    o re-work pkg/thsice interface with ocean & bulk_force pkg to allow
216      atmospheric model (AIM) to use it ; add a "slab ocean" component.
217    o pkg/aim_v23 : add interface to call thermodynamic sea-ice (thsice)
218    o update global_ocean.cs32x15/output (.thsice) after changes in pkg/thsice
219    o extending useSingleCpuIO option to work with new exch2 I/O format
220      - old-style, missing-tile I/O is still accessible by defining CPP
221        option MISSING_TILE_IO in pkg/mdsio/MDSIO_OPTIONS.h
222    o monitor package can write to NetCDF files and/or STDOUT
223    o fix re-definition bug in MNC_GRID_INIT_ALL()
224    o doc/api_reference added
225      - a framework for building an API Reference Manual using all
226        the "protex" comments embedded in the code
227      - see pkg/generic_advdiff, pkg/mnc for examples
228    o MNC:
229      - make myThid the last argument for all subroutines
230      - new default for the grid files: NO halos
231      - add useMNC and other run-time flags
232      - separate per-file-group handling of the unlimited dimension
233      - early initialization of MNC w/ flags read at the eeboot stage
234        and lookup tables set in initialize_fixed
235      - write all MNC output to a freshly-created directory
236    o thermodynamics sea-ice (thsice) is now tested with testreport.
237    o test exp. advect_cs: use the standard cs32 grid ; update output.
238    o Added functionality to grdchk:
239      pick global i,j,k position (or nearest wet) where to perform check.
240    
241    checkpoint52l_post
242    o new land formulation:
243      a) use ground enthalpy as prognostic variable to ensure exact
244         energy conservation.
245      b) account for water temperature and for latent heat of freezing
246         in all processes (rain, run-off, ground storage)
247      c) compute surface and ground temperature implicitly.
248    o aim_v23 modification for new land model:
249      a) Treat separately land / ocean / sea-ice surface fluxes
250         to allow implicit computation of land & sea-ice surface temp.
251      b) add snow precipitation.
252    checkpoint52l_pre
253    
254    o fix problem (when 1 tile is empty) in min/max monitor.
255    o fix bug in timeAve (u,vZetatave in common block)
256    o no restoring terms under ice for pkg/seaice
257    o moved SEAICE_DO_DIAGS to S/R do_the_model_io
258    o bug fix for pkg/seaice pickups
259    o change MNC call locations and add coordinate attributes
260    o mask vorticity at the corner ; affects global_ocean.cs output
261    o fix ini_curvilinear_grid ; test CS experiments with mpi
262    o aim.5l_cs: modify sea-ice fraction input file ; update output
263    o exf: Adding simple range check routine for exf fields after read
264    
265    checkpoint52k_post
266    o removed top-level directory "diags"
267      - we migrated these functions to pkg/timeave a long time ago
268    o fixed bug introduced in pkg/monitor
269    o accuracy ctrlprec = 32 insuffient for gradient checks using
270      averaged fields (I/O via cost_averages)
271      -> use ctrl.h in active_file*.F to control I/O precision.
272    o paramter list of CALL ADTHE_MAIN_LOOP
273    o added initial do_the_model_io to ecco
274    o set all ...Freq to zero after cost_final
275      taveFreq, dumpFreq, pChkptFreq
276    o MAIN and ECCO differentiability restored
277    
278    checkpoint52j_post
279    o fix nchklev in tamc.h for global_ocean...
280    o Bringing flow and store directives up-to-date
281    o Really weird thing!
282      call do_the_model_io from the_main_loop with parameters
283      starttime, niter0, instead of mytime, myiter, screws up the adjoint:
284      TAF places a faulty re-call of initialise_varia
285      after cost_final call which should not be there!
286    checkpoint52j_pre
287    
288    o tweaked pkg/mdsio/mdsio_readfield.F to have more useful logic and
289      error messages
290    o fix errorMessageUnit problem. remove old version of mdsio from eesup/src
291    o modified pkg/mdsio/mdsio_readfield.F -- commented out diskspace-eating
292      debug output
293    o modfied mdsio_writefield.F to handle non-global files under exch2
294    o update AIM Cubed-Sphere exp (aim.5l_cs):
295      use land, p*, and Franco.M forcing fields with fractional land-sea mask.
296    o update AIM Equatorial Channel exp:
297      use standard aim_v23 pkg and change the SST fields to be more realistic.
298    o globalFile now works with exch2
299    o merged mom_vi_calc_relvort3.F, mom_vi_del2uv.F and
300      mon_vort3.F to make exch2 friendly with >1 tile per cube face
301    o limit timeave output for hi-res integrations
302    
303    checkpoint52i_post
304    o removed CPP_EEOPTIONS.h from verification/*/code
305    o updated the tiling for global_ocean_pressure
306    checkpoint52i_pre
307    
308    o update aim.5l_LatLon using the standard aim_v23 pkg (instead of
309      the old pkg/aim).
310    
311    checkpoint52h_pre
312    o shortened offending lines in exch2_send_rx?.template
313    o modified W2_EXCH2_TOPOLOGY.h to reflect current topology generator
314    o genmake2: add build & execute test for NetCDF code
315    o modded aim.5l_cs and global_ocean.cs32x15 to use exch2, removed
316      old grid files, moved CPP_EEMACROS.h to pkg/exch2
317    o added useSingleCPUIO flag to monitor.F and mon_out.F
318    o added temporary hack for sea-ice dynamics on the cube:
319      metric terms are ignored and it is assumed that
320      there is no sea-ice on cube faces 1, 2, 4, and 5.
321    
322    checkpoint52f_post
323    o added exch2 cube routines to pkg/exch2
324    o modified hs94.cs-32x32x5 to use it
325    o added new grid files to hs94.cs-32x32x5
326    checkpoint52f_pre
327    
328    checkpoint52e_post
329    o first attempt to solve vertical advection (momemtum & T,S) Implicitly
330      for now, only implemented with Lax-Wendroff (tracer) and VectInv (mom)
331    o step.1 : rewrite (as in MultiDimAdvec) explicit tracer stepping (gad_calc_rhs.F)
332      to work with implicit vertical advection and AB ;
333    o Implic. vert. advect. implemented with flux-limiter, c2, u3 and c4 scheme.
334    o update output (gad_calc_rhs.F changes affect truncation error) of exp:
335     front_relax, global_ocean .cs32x15 & _pressure, internal_wave, lab_sea, natl_box
336    checkpoint52e_pre
337    
338    o fix bug in impldiff when Nr=1 or Nr=2.
339    o change the albedo in pkg/thsice (as GISS model); update output_thsice.txt
340    o little changes (fftpack, aim/phy_suflux ...) to pass the "checkbounds" test.
341    o fix deltaTfreesurf in update_cg2d.F (left from c45d_post): affects 2
342      ocean exp. that use NLFS: global_ocean.cs32x15 & global_ocean_pressure
343    o added exf_offset_atemp for Celsius to Kelvin conversion of atemp
344    o eesupp/inc/EEPARAMS.h: MAX_NO_PROCS=1024
345    o pkg/cal/cal_toseconds.F fix for long (>60 years) integrations
346    
347    checkpoint52d_post
348    o re-tiled many expts to allow comparison in multi-processor mode
349      - updated output accordingly
350      - changed hs94.128x64x5 to use intial T from file rather than use the
351        random number generator
352    o add infrastructure in model routines for fizhi and gridalt packages
353    o change global_ocean.cs32x15 because of Pb with GM on CS-grid.
354    o changes to permit hi-res, cubed-sphere, configuration
355      - added useSingleCpuIO capability to mdsio_readfield.F and exf_interp.F
356      - added "#undef ALLOW_USE_MPI" support to eesupp/src/scatter_2d.F
357      - added pkg/exf/exf_set_uv.F for on-the-fly interpolation and rotation
358        of surface winds for the cube
359      (A verification experiment, based on global_ocean.cs32x15, but with
360       pkg/seaice turned on and with on-the-fly interpolation from the NCEP
361       Gaussian grid is described in MITgcm_contrib/high_res_cube/README_ice,
362       complete with example surface forcing files and matlab scripts to look
363       at the output and compare it with that of global_ocean.cs32x15.)
364    o packages pickup: $PKG_write_pickup called from packages_write_pickup ;
365       but call to $PKG_read_pickup remains in $PKG_ini_vars: change CD_code
366       to conform to the common rule.
367    o check-in the first version of the coupler + interfaces for multi-components
368       set-up (Chris's version, adapted to work on cubed-sphere grid); use MPI.
369       - imply modification in eesupp (MPI_COMM_MODEL < MPI_COMM_WORLD).
370       - atmosphere: use pkg aim_v23 ; no sea-ice for now.
371       - ocean and atmos. share the same horizontal grid (no interpolation).
372       - exchanges between component and coupler is done in forward_step
373    o new verification experiment, cpl_aim+ocn:
374       coupled ocean - AIM atmosphere on cs32 grid.
375    
376    checkpoint52d_pre
377    o surface flux time-av diagnostic modified for NLFS & RealFreshWater
378    o add call to AIM pendant S/R in external_forcing & external_fields_load.F
379    
380    checkpoint52c_post
381    o Fixing OPTIONS files for use of exf:
382      - ALLOW_ECCO not needed
383      - ECCO_CPPOPTIONS.h should not be included from
384        EXF_OPTIONS.h/CAL_OPTIONS.h, but from CPP_OPTIONS.h
385        as has been the case in the past
386      - All cal/exf related options are currently set in
387        single header file. Should remain so until we
388        agree on a consistent new policy.
389    o Removed all CPP options for cal package.
390      cal has no more CPP options.
391    o modified STOREs in GAD_ADVECTION
392    o corrected key comp. for passkey
393    
394    checkpoint52b_post
395    o new version: "thsice" of thermodynamic sea-ice pkg:
396     - only 1 call from "forward_step"; conserve energy, fresh-water & salt.
397     - modify fluxes but do not change theta directly;
398     - light cleaning of bulk_force pkg (still needed with thsice).
399     - add forcing fields + data files in global_ocean.cs32x15/inp_thsice
400       + output_thsice.txt to test thsice & bulk_force pkgs.
401    o put back grid & coriolis monitor output.
402    checkpoint52b_pre
403    
404    o call "do_the_model_io" at the beginning (=> dump initial state)
405    o use rhoConstFresh to define convertEmP2rUnit (was done only in ocean-P)
406    o sort out interplay between tamc.h and PTRACERS_OPTIONS.h
407      (need info on NUMBER_OF_PTRACERS)
408    o missing PTRACERS headers in some routines
409    o default tamc.h in pkg/autodiff supposed to crash
410      to ensure proper customization
411    
412    checkpoint52a_post
413    o modifications to make FREEZE (_SURFACE) flux visible to pkg/kpp
414      - moved surfaceTendencyTice from pkg/seaice to main code
415      - subroutine FREEZE_SURFACE now limits only surface temperature
416        and is called in FORWARD_STEP (if allowFreezing=.TRUE.)
417        => new output.txt for global_ocean.cs32x15 & global_with_exf
418      - keep the old version of FREEZE for backward compatibility;
419        global_ocean.90x40x15 left unchanged using useOldFreezing=.TRUE.
420      - corresponding modifs for TAF directives
421    o added surface flux output variables to TIMEAVE_STATVARS
422    o time-averaged output for pkg/ptracers
423    o fix problem with ECCO-related divided adjoint
424      snapshot file was missing some ad-variables,
425      but no warning issued by TAF
426    
427    checkpoint52a_pre
428    o some bug fixes for #undef REAL4_IS_SLOW
429    
430    checkpoint52 = ecco_c52_e35
431    o after testing adjoints of checkpoint51u_post
432    
433    checkpoint51u_post
434    o this is the post-merge tag of the ecco-branch
435      (needs another clean checkout and re-testing)
436    o various natl_box_adjoint configs and results
437      but no input fields
438    o obcs adjoint not yet merged!
439    o adding ECCO global 1x1 and 2x2 degree configs
440    o updated/extended some store directives for seaice
441    o pkg/ecco now containes ecco-specific part of cost function
442    o top level routines the_main_loop, forward_step
443      supersede those in model/src/
444      previous input data.cost now in data.ecco
445      (new namelist ecco_cost_nml)
446    o in ctrl/ cleaned some cross-dependencies and updated CPP options
447    
448    checkpoint51t_post
449    o this is the pre-merge tag of the ecco-branch
450    
451    checkpoint51s_post
452    o cleanup: removed various obsolete #define-s
453    o pkg/grdchk
454      - renamed 'ph-grd 3' to 'grad-res'
455      - merged from ecco-branch
456        (remaining bug fixes for obcs gradient checks)
457      - additional high-precision output for testreport
458        (grep for 'precision_grdchk_result')
459    
460    checkpoint51r_post
461    o cleaned up or removed CPP_OPTIONS.h files
462    o updated results for some of the tests to reflect the new
463      optfiles (-ieee: -O0 instead of -O3)
464    
465    checkpoint51q_post
466    o cd_code:
467      - moved cd_scheme.F -> cd_code_scheme.F
468      - separate read_checkpoint from cd_code_ini_vars.F
469      - separated cd_code part from write_checkpoint
470      - updated AD_SOURCE, generated .flow
471      - added CD_CODE_VARS.h to the_main_loop
472      - Moving cd_code specific store dir.s to pkg/cd_code
473    o ctrl package totally restructured
474      - pack/unpack now optional and decoupled from
475        xx_/adxx_ I/O
476      - ctrl_pack/unpack cleaned
477        (new routines ctrl_init_ctrlvar.F, pkg/ctrl/ctrl_init_wet.F)
478      - confined inclusion of AD_CONFIG.h to where necessary.
479    o genmake2: changed AD dependencies from SRCFILES to AD_FILES
480    
481    checkpoint51p_post
482    o create initial cd_code package
483      - WARNING: the initialization of fields within packages
484        is broken because INI_FIELDS (where READ_CHECKPOINT is
485        called) is called *before* PACKAGES_INIT_VARIABLES.
486        This seems to be backwards since
487        1) its important to initially zero the entire field including
488           the "halo" region
489        2) zeroing needs to be done *before* reading pickup info
490           and the pickup call might or might not happen in any
491           particular run
492      - this needs an overhaul for R2
493    o cleanup verification/*/code/GMREDI_OPTIONS.h
494    o cleanup testreport
495    
496    checkpoint51o_post
497    o bringing AD-related verif's up to date with genmake2
498      - carbon/
499      - global_ocean.90x40x15/
500      - hs.94.1x64x5/
501      - (front_relax/ )
502    o (more) consistent directory structure for AD-related verif.'s
503    o cleaning ALLOW_GRADIENT_CHECK -> ALLOW_GRDCHK
504    o cleaning some ALLOW_TANGENTLINEAR_RUN -> ALLOW_AUTODIFF
505    o bug fix in find_alpha.F for MDJWF:
506      - modif. to alpha = 1/D*( dN/dT - rho*dD/Dt) to account for
507        change rho -> rho-rhoConst
508      - replace call find_rho to find_rhonum
509    o initialisation of rFlx extended to full array (required by TAF)
510      and shifted to thermodynamics
511    o removed PTRACERS.h in ptracers routine
512    o added surfacetendencyPtr to S/R parameter list pracers_forcing
513    o Correcting initialisations for fVerU, fVerV.
514    o helping TAF to recognize dependency on kUp for
515      fVerU, fVerV
516    o Replacing delZ by delR in pkg/ctrl/
517    checkpoint51o_pre
518    
519    o undid all of cp51 pending some cleanups and discussion
520    o added the [#include "AD_CONFIG.h"] statement to all files that need
521       it for adjoint/tl #defines
522     o re-worked the build logic in genmake2 to support AD_CONFIG.h
523     o removed tools/genmake since it no longer works
524    
525    checkpoint51n_post
526    o modifications to make FREEZE flux visible to pkg/kpp
527      - moved surfaceTendencyTice from pkg/seaice to main code
528      - FREEZE & EXTERNAL_FORCING_SURF moved to FORWARD_STEP
529      - subroutine FREEZE now limits only surface temperature
530        (this means new output.txt for global_ocean.90x40x15,
531         global_ocean.cs32x15, and global_with_exf)
532    o added surface flux output variables to TIMEAVE_STATVARS
533    
534    checkpoint51n_pre
535    o added "#undef ALLOW_USE_MPI" support to eesupp/src/gather_2d.F
536    o added [#include "AD_CONFIG.h"] to all files that use the following
537      defines:
538      - ALLOW_ADJOINT_RUN
539      - ALLOW_TANGENTLINEAR_RUN
540      - ALLOW_ECCO_OPTIMIZATION
541    
542    checkpoint51m_post
543  o incorporating changes to get TAMC/TAF working in genmake2  o incorporating changes to get TAMC/TAF working in genmake2
544    - added new TAMC/TAF targets to the Makefile    - added new TAMC/TAF targets to the Makefile
545    - various cleanups related to package handling    - various cleanups related to package handling
546      - these changes should have no impact on the forward model
547    
548  checkpoint51l_post  checkpoint51l_post
549  o changes to pkg/cal and pkg/exf that allow and speed-up long integrations  o changes to pkg/cal and pkg/exf that allow and speed-up long integrations

Legend:
Removed from v.1.190  
changed lines
  Added in v.1.341

  ViewVC Help
Powered by ViewVC 1.1.22