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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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untagged |
o create initial cd_code package |
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- WARNING: the initialization of fields within packages |
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is broken because INI_FIELDS (where READ_CHECKPOINT is |
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called) is called *before* PACKAGES_INIT_VARIABLES. |
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This seems to be backwards since |
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1) its important to initially zero the entire field including |
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the "halo" region |
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2) zeroing needs to be done *before* reading pickup info |
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and the pickup call might or might not happen in any |
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particular run |
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- this needs an overhaul for R2 |
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o cleanup verification/*/code/GMREDI_OPTIONS.h |
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o cleanup testreport |
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checkpoint51o_post |
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o bringing AD-related verif's up to date with genmake2 |
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- carbon/ |
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- global_ocean.90x40x15/ |
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- hs.94.1x64x5/ |
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- (front_relax/ ) |
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o (more) consistent directory structure for AD-related verif.'s |
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o cleaning ALLOW_GRADIENT_CHECK -> ALLOW_GRDCHK |
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o cleaning some ALLOW_TANGENTLINEAR_RUN -> ALLOW_AUTODIFF |
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o bug fix in find_alpha.F for MDJWF: |
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- modif. to alpha = 1/D*( dN/dT - rho*dD/Dt) to account for |
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change rho -> rho-rhoConst |
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- replace call find_rho to find_rhonum |
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o initialisation of rFlx extended to full array (required by TAF) |
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and shifted to thermodynamics |
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o removed PTRACERS.h in ptracers routine |
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o added surfacetendencyPtr to S/R parameter list pracers_forcing |
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o Correcting initialisations for fVerU, fVerV. |
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o helping TAF to recognize dependency on kUp for |
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fVerU, fVerV |
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o Replacing delZ by delR in pkg/ctrl/ |
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checkpoint51o_pre |
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o undid all of cp51 pending some cleanups and discussion |
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o added the [#include "AD_CONFIG.h"] statement to all files that need |
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it for adjoint/tl #defines |
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o re-worked the build logic in genmake2 to support AD_CONFIG.h |
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o removed tools/genmake since it no longer works |
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checkpoint51n_post |
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o modifications to make FREEZE flux visible to pkg/kpp |
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- moved surfaceTendencyTice from pkg/seaice to main code |
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- FREEZE & EXTERNAL_FORCING_SURF moved to FORWARD_STEP |
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- subroutine FREEZE now limits only surface temperature |
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(this means new output.txt for global_ocean.90x40x15, |
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global_ocean.cs32x15, and global_with_exf) |
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o added surface flux output variables to TIMEAVE_STATVARS |
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checkpoint51n_pre |
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o added "#undef ALLOW_USE_MPI" support to eesupp/src/gather_2d.F |
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o added [#include "AD_CONFIG.h"] to all files that use the following |
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defines: |
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- ALLOW_ADJOINT_RUN |
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- ALLOW_TANGENTLINEAR_RUN |
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- ALLOW_ECCO_OPTIMIZATION |
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checkpoint51m_post |
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o incorporating changes to get TAMC/TAF working in genmake2 |
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- added new TAMC/TAF targets to the Makefile |
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- various cleanups related to package handling |
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- these changes should have no impact on the forward model |
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checkpoint51l_post |
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o changes to pkg/cal and pkg/exf that allow and speed-up long integrations |
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- faster algorithm for cal_addtime.F |
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- higher precision arithmetic, where needed |
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- pkg/exf *startdate variables changed from calendar date to |
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model integration time |
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checkpoint51l_pre |
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o add salt flux to forcing fields (used when salty sea-ice forms or melts) |
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o enable to apply restoring on S & T only in a latitude band. |
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o update output (external_forcing_surf modif. change truncation errors) |
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global_ocean.cs32x15, global_ocean_pressure, lab_sea, natl_box |
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checkpoint51k_post |
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o change default to: useNHMTerms=.FALSE. |
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- new output.txt for atmos. exp (NHMTerms were wrong but now turned off): |
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adjustment.128x64x1, aim.5l_Eq_Ch, aim.5l_LatLon, hs94.128x64x5, hs94.1x64x5 |
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- new output.txt for idealized oceanic exp (NHMTerms are now turned off): |
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exp1, ideal_2D_oce |
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- change data file of oceanic exp (leave the results unchanged for now) |
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exp2, global_ocean[90x40x15,pressure,with_exf], lab_sea, natl_box |
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o set gravitySign automatically according to the vertical coordinate used |
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(and change sign: back to "logical" value: +1 when R increases downward) |
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o added an include barrier to the default CPP_OPTIONS.h and |
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removed the #include "PACKAGES_CONFIG.h" from it |
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o fix a bug in mom_fluxform (from chk51j_post) |
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checkpoint51j_post |
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o Added some AD-related initialisations in mom_vecinv/ mom_fluxform/ |
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o adjusted some flow directives (dynamics, thermodynamics) |
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o added cubed-sphere case to test cost function |
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o heckpoint_lev?_directives.h now include |
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pkg-specific directives, whenever those are enabled. |
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o Moving pkg-specific flow directives to corresponding pkg |
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Moving pkg-specific differentiation list to corresponding pkg |
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Moving pkg-specific checkpoint-lev storing to corresponding pkg |
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---> conventions are |
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- pkg_ad.flow |
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- pkg_ad_diff.list |
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- pkg_ad_check_lev?_dir.h |
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checkpoint51i_post |
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o merge of the branch-genmake2 |
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- knowingly breaks the older genmake |
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- automatic generation of all ALLOW_${PKG_NAME} defines |
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- new testreport supersedes older testscript |
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o large number of package inclusion and header cleanups |
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checkpoint51i_pre |
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o new output for adjoin of global ocean vector invariant |
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o fix for checkpoint of thermodynamic seaice and bulk_force |
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o Steph gchem various cleanups |
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checkpoint 51h_pre |
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o fixed some single quotes |
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o modify gchem pkg to be more versatile |
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o modifications to clean up dic pkg |
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o add pkg/cfc |
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checkpoint51g_post |
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o provide links for ARPACK and ADM*TLM |
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o start removing verification/vero/ |
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o update AD-related stuff |
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(in particular some IF-statements in model/src/ routines) |
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o adding to verification/global_ocean.90x40x15/ adjoint of |
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vector invariant setup |
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checkpoint51f_post |
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o update advect_xz/output.txt (left from chekpoint50f_pre, ini_vel modif) |
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o Mods and bug fixes to pkg/cal, pkg/exf, etc., needed for computation |
o Mods and bug fixes to pkg/cal, pkg/exf, etc., needed for computation |
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of tracer Green's fucntions for ocean inversion project. |
of tracer Green's fucntions for ocean inversion project. |
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