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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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o pkg/cheapaml: |
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- remove un-used variables (Qnet,EmPmR) from pickup files. |
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- store tendency of advected variables into cheapaml pickup file |
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and fix the AB-2 restart. |
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o verification/offline_exf_seaice and lab_sea adjoint: |
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- switch to new code (#undef SEAICE_GROWTH_LEGACY). |
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- switch to 4 time steps in offline, consistent with lab_sea. |
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- match paramaters from SEAICE_GROWTH_LEGACY branch in data.seaice. |
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- update results after change of experiment seaice. |
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o model/src: |
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- add run-time parameter to select CG2D solver minimum-residual solution |
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(in case of a poor convergence). |
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o pkg/seaice/seaice_lsr.F |
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- move calculation of matrix coefficients into new |
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S/R SEAICE_CALC_LSR_COEFFS; for now this routine remains in the same |
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file; the main purpose of this change is to be able to reuse the code |
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in S/R SEAICE_PRECONDITIONER |
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- modify the computation of the residual so that the mass of sea-ice |
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is not used twice; this simplyfies the calculations, but since |
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the residual is never used except when LSR_mixIniGuess.ge.4---and this is |
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not tested in testreport---this does not affect the testreport results. |
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o verification/seaice_obcs: |
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- disable SEAICE_GROWTH_LEGACY; reset input files to match those of |
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verification/lab_sea/input.salt_plume; changes results/output.txt* |
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o model/src: |
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- adapt quasi-hydrostatic formulation to work with p or p* coordinate. |
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o pkg/seaice: |
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- improve description of parameters in seaice_fgmres.F and start |
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cleaning up the code |
| 36 |
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- change name of SCALPROD to SEAICE_SCALPROD and modify meaning of |
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second argument |
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- add a metric based on grid cell area to SEAICE_SCALPROD; update |
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results of offline_exf_seaice.dyn_jfnk |
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- compute initial residual norm in seaice_jfnk based on SEAICE_SCALPROD |
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o pkg/aim_v23: |
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- fix an other bug in dissipation heating (grid-cell area was missing). |
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o model/src + pkg/seaice: |
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- add global (multi-tile) linear solver for pair of tri-diagonal system |
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along X and Y lines, respectively for U and V component. |
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Note: 1) MPI and cube-exchange not yet coded. |
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2) probably not accurate for poorly conditioned / large size problem. |
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- add option for SEAICE_LSR to use global (multi-tile) tri-diagonal solver; |
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default: not compiled and not used. |
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o pkg/seaice: |
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- first attempt at a multi-threaded fgmres solver for the JFNK solver: |
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introduce bi/bj loops and use global_sum_tile_rl instead of |
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mpi_allreduce in seaice_fgmres.F |
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- improve diagnostics output for fgmres solver (seaice_fgmres.F) |
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- replace a few unnecessary goto statements by if-blocks (seaice_fgmres.F) |
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- add a verification experiment for JFNK in offline_exf_seaice |
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o verification: |
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- change (for now, only fwd test) offline_exf_seaice experiment: |
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use a re-entrant channel with idealized costline (trapezoidal shape) |
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at southern boundary to explore seaice dynamics and thermodynamics |
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with simple forcing. Main set-up has dynamics+thermo and SST relaxation; |
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secondary test (input.thsice) use thermodynamics only with SST relaxation. |
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- add seaice-dynamics only secondary test using LSR and pkg/thsice advection. |
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o pkg/exf: |
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- disable "sstExtrapol" when Nr=1 |
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o verification: |
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- add new experiment "cheapAML_box" (simple 1 layer set-up from Bruno Deremble) |
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to test pkg/cheapaml. |
| 69 |
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o pkg/aim_v23 & pkg/shap_filt: |
| 70 |
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- fix dissipation heating (erroneous gravity multiplication factor). |
| 71 |
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o pkg/seaice: |
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- remove unused field pressPre from jfnk solver |
| 73 |
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- rename two subroutines in seaice_preconditioner.F |
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o eesupp/src: |
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- S/R MDSFINDUNIT avoids reserved unit numbers (scrUnit1, eeDataUnit ...) |
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o pkg/seaice/seaice_preconditioner.F: fix preconditioner once again |
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- remove wrong parts of the rhs and the lhs (were in there |
| 78 |
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because I did not understand the concept of this preconditioner) |
| 79 |
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- add an exchange between u- and v-sweep. This increases communication |
| 80 |
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by a factor of two but improves the convergence of jfnk. Ideally, |
| 81 |
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one would like the u- and v-sweep to be independent. So far within |
| 82 |
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undocumented ifdefs |
| 83 |
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- reorganize the extra computations for printing the residuals |
| 84 |
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o tools/genmake2: |
| 85 |
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- comment out the "mpif.h" include in NetCDF test programm (for MPI built) |
| 86 |
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since it's not necessary (and was preventing to use MNC in some cases). |
| 87 |
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|
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checkpoint64a (2012/11/16) |
| 89 |
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o pkg/autodiff: |
| 90 |
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- improve pkg-internal logical parameter switch (inAd/inFwd mode) so that |
| 91 |
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autodiff_readparms.F no longer depends on calling order (within |
| 92 |
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packages_readparms.F) and no longer requires to include ${PKG}_PARMS.h): |
| 93 |
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rename param turnFreeDriftInAdMode to SEAICEuseFREEDRIFTswitchInAd |
| 94 |
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and change param SEAICEuseDYNAMICSinAdMode to SEAICEuseDYNAMICSswitchInAd. |
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o pkg/obcs: |
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- adding tidal velocity forcing capability to obcs |
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for usage example, see verification/seaice_obcs/input.tides |
| 98 |
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o pkg/seaice: |
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- turn the LSR-relaxation parameters WFAU/V into runtime parameters |
| 100 |
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SEAICE_LSRrelaxU/V |
| 101 |
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- introduce runtime parameter SEAICEetaZmethod (=0 by default) |
| 102 |
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o pkg/aim_v23: |
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- implement heating from friction (bottom friction and stratospheric drag). |
| 104 |
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o pkg/shap_filt: |
| 105 |
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- fix diagnostic "SHAP_dKE" (was 2 time smaller); implement heating from |
| 106 |
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dissipation but only for Shap_funct=2, active when addFrictionHeating=T. |
| 107 |
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o model/src: |
| 108 |
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- move AddMass common block from DYNVARS.h to FFIELDS.h; allow to read-in |
| 109 |
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time-constant addMass field from file (addMassFile); |
| 110 |
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- support for heating due to friction (and Kinetic Energy dissipation): |
| 111 |
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add option, run-time switch and 3-D field array + support code ; each pkg |
| 112 |
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or S/R can add heating contribution (if there is a sink of KE); the sum is |
| 113 |
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accounted for as a Temperature tendency term (EXTERNAL_FORCING_T). |
| 114 |
o pkg/seaice: |
o pkg/seaice: |
| 115 |
- complete merge of ITD code into seaice_growth.F |
- complete merge of ITD code into seaice_growth.F |
| 116 |
from MITgcm_contrib/torge/itd/code/ |
from MITgcm_contrib/torge/itd/code/ |
| 122 |
+ introduce global field etaZ |
+ introduce global field etaZ |
| 123 |
+ add different methods for computing etaZ, for now the old |
+ add different methods for computing etaZ, for now the old |
| 124 |
method (simple averages of eta to Z-points) is hardwired |
method (simple averages of eta to Z-points) is hardwired |
| 125 |
+ replace etaMeanZ by etaZ in seaice_lsr, seaice_calc_residual, |
+ replace etaMeanZ by etaZ in seaice_lsr, seaice_calc_residual, |
| 126 |
seaice_preconditioner |
seaice_preconditioner |
| 127 |
- simplify computations for SEAICE_ZETA_SMOOTHREG |
- simplify computations for SEAICE_ZETA_SMOOTHREG |
| 128 |
- seaice_preconditioner: |
- seaice_preconditioner: |
| 129 |
+ replace one remaining press by pressLoc (mistake) |
+ replace one remaining press by pressLoc (mistake) |
| 130 |
+ adjust printing of residuals |
+ adjust printing of residuals |
| 131 |
- improve I/O of diagnostics of JFNK in seaice_jfnk.F: |
- improve I/O of diagnostics of JFNK in seaice_jfnk.F: |
| 132 |
+ add (SEAICE.h) and rename some counters (initiliased in |
+ add (SEAICE.h) and rename some counters (initiliased in |
| 133 |
seaice_init_fixed.F) |
seaice_init_fixed.F) |
| 134 |
+ add _BEGIN/END_MASTER (myThid) around print statements |
+ add _BEGIN/END_MASTER (myThid) around print statements |
| 135 |
+ print total number of iterations and failures over SEAICE_monFreq |
+ print total number of iterations and failures over SEAICE_monFreq |
| 141 |
(seaice_jfnk.F, seaice_fgmres.F) |
(seaice_jfnk.F, seaice_fgmres.F) |
| 142 |
- seaice_calc_l/rhs.F: replace maskW/S by maskInW/S; this fixes |
- seaice_calc_l/rhs.F: replace maskW/S by maskInW/S; this fixes |
| 143 |
a serious convergence problem when open boundaries are involved |
a serious convergence problem when open boundaries are involved |
| 144 |
o pkg/ggl90: fix computation of control volumes for the case of |
o pkg/ggl90: fix computation of control volumes for the case of |
| 145 |
ALLOW_GGL90_HORIZDIFF (probably not used very often): move control volumes |
ALLOW_GGL90_HORIZDIFF (probably not used very often): move control volumes |
| 146 |
up half a grid cell from C-centered to W-centered (pointed out by C. Eden) |
up half a grid cell from C-centered to W-centered (pointed out by C. Eden) |
| 147 |
o pkg/seaice: simplify seaice_evp by avoiding use of extra fields u/vIceC |
o pkg/seaice: simplify seaice_evp by avoiding use of extra fields u/vIceC |
| 148 |
o pkg/autodiff |
o pkg/autodiff |
| 149 |
- Add inAdMode switch for SEAICEuseDYNAMICS: |
- Add inAdMode switch for SEAICEuseDYNAMICS: |
| 150 |
SEAICEuseDYNAMICSinAdMode |
SEAICEuseDYNAMICSinAdMode |
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(extend logic in ADAUTODIFF_INADMODE_SET) |
(extend logic in ADAUTODIFF_INADMODE_SET) |
| 152 |
o pkg/seaice |
o pkg/seaice |
| 153 |
- Step 1 of merging ice-thickness distribution (ITD) code from |
- Step 1 of merging ice-thickness distribution (ITD) code from |
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