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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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o verification (atmospheric set-up): |
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- change eosType='IDEALGAS' to eosType='IDEALG' to match variable declaration |
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o pkg/profiles : refine profiles and files handling. |
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o model/src and pkg/ecco : introduce run-time switch usePROFILES. |
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o model/src/the_main_loop.F, forward_step.F and pkg/exf/EXF_OPTIONS.h : |
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- changes to use model/src/the_main_loop.F rather than the ecco version |
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in ecco type adjoint runs. |
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o model/src: |
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- move computation of recip of grid distance & area from INI_MASKS_ETC to INI_GRID |
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- move setting of h0Fac[C,W,S] from INI_LINEAR_PHISURF to INI_MASKS_ETC |
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- update_masks_etc.F: rename SMOOTH*_R4,R8 function to the corresponding type (RS,RL) |
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o model/src: |
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- fix S/R UPDATE_CG2D for ALLOW_DEPTH_CONTROL case (was empty before); |
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update output of test experiment bottom_ctrl_5x5. |
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o pkg/generic_advdiff: |
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- implement vertical bi-harmonic diffusion (for now, only for T & S and |
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only explicitly). |
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o verification/bottom_ctrl_5x5/ |
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update reference output (results changed quite some time ago, |
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not sure when; but new reference results look ok in terms of grdchk) |
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o verification/1D_ocean_ice_column/ |
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For verification purposes, the exact adjoint rather than an approx. |
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should be used (e.g., to comare against F.D. or TLM). |
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removed autodiff_inadmode*_ad.F routines in code_ad/ |
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Update results/ accordingly. |
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o pkg/cal: |
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- change cal_getdate.F so that output date is function of input time only |
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(less ambiguous, not mixed up with input iteration number). |
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- fix calendarDumps for non-zero phase-lag (S/R CAL_TIME2DUMP). |
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o pkg/diagnostics: |
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- implement calendarDumps also for stats-diags |
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- implement calendarDumps also for snap-shot output (negative freq) |
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- for now, ignores calendarDumps if non-zero phase-lag. |
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checkpoint63n (2012/06/04) |
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o model/src: |
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- recompute rSurfW & S to ensure consistent column thickness (needed for rStar) |
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between Sum_k(hFac*drF) and rSurf-rLow, for now only when using pkg/shelfice; |
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- use h0FacC, W & S to compute hFac_surfC, W & S in calc_surf_dr.F (more |
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similar to calc_r_star.F); update results of experiment internal_wave and |
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tutorial_global_oce_in_p (affected @ truncation level). |
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o pkg/shelfice: |
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- add parameterisation of advective-diffusive flux into the ice shelf |
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according to Holland and Jenkins (1999), eq.22-33, as suggested by Jan De Ryd |
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- simply eps3/3a computation |
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o eesupp: |
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- add new CPP option (DISCONNECTED_TILES) to disconnect tiles (no exchange |
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between tiles, just fill-in edges assuming locally periodic subdomain) and |
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add corresponding exchange subroutines (EXCH0); |
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- new CG-solver version (_EX0) for disconnected-tiles special case. |
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o model/src (CG-solvers): |
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- modify Single-Reduction version (CG2D_SR) in case cg2dMaxIters is reached |
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(similar final residual output and max-Iter number as with standard version); |
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- allows to store and use lowest-residual solution (standard & _SR versions); |
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- cleaning up (remove old, commented out code, LETS_MAKE_JAM ...). |
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- by default, also compile CG2D_SR version (define ALLOW_SRCG in CPP_OPTIONS.h) |
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o eesup/src: |
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- global_vec_sum.F cleaning: add a BARRIER ; update comments ; remove ndef |
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ALWAYS_USE_MPI (no longer needed after fixing usingMPI settings - March 2012) |
| 66 |
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o pkg/salt_plume added to lab_sea/input_ad.noseaicedyn |
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checkpoint63m (2012/04/27) |
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o pkg/shelfice: |
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- account for partical cells in surface level below ice-shelf for hydrostatic |
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pressure calculion (set uniformFreeSurfLev to F); update isomip experiments. |
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o ad test experiments: |
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- update and rename to "ad_optfile.local" local AD-optfile specific to a |
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particular adjoint verification experiment (in verification/*/code_ad/) |
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o pkg/seaice & pkg/exf: |
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- Part two of ECCO-CLIVAR code merges. |
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Completes merge of seaice area relax. code. |
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Requires unified CPP option EXF_ALLOW_SEAICE_RELAX |
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to be set in EXF_OPTIONS.h since this pkg controls its I/O |
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(and avoids second CPP option in SEAICE_OPTIONS.h) |
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- change default value of costIceStart & costIceEnd to a valid date. |
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- add snowPrecip to HSNOW in seaice_growth |
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o pkg/ptracers: |
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- move ptracers summary and setup check into separated S/R ; add a check for |
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valid PTRACERS_Iter0 value (error+stop or just warning). |
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o pkg/cal (+ pkg/ecco): |
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- avoid calling a S/R with 2 times the same arg (FWD: unless both are only used |
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as input; and for AD, unless both are not differentiable (e.g., k index)). |
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o model/src: |
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- define internal flag "uniformFreeSurfLev" (=T when free-surface level-index |
| 91 |
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is everywhere k=1) to speed-up some calculations (by pass kSurf reference); |
| 92 |
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temporary set to usingZCoords value (to be changed to F when using shelfice). |
| 93 |
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- hydrostatic pressure: implement partial cell near the surface also for |
| 94 |
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Z-coordinates (for the case where uniformFreeSurfLev=F); replace test on |
| 95 |
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usingZCoords with test on uniformFreeSurfLev where needed (in NonHyd code). |
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o pkg/ctrl/ctrl_init.F: |
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- add a formal parameter to s/r ctrl_init_rec to print |
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xx_$(ctrl_valiable)_file for easier debugging |
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- move call of cal_* routines into the if-block where they are really |
| 100 |
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needed so that xx_$(ctrl_variable)_period can be 0 or -12 without having |
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to specify a startdate |
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o pkg/seaice: |
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- update comments in SEAICE_OPTIONS.h (+ similar update of lab_sea/code and |
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global_ocean.cs32x15/code versions). |
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- turn on seaice Multi-category (in data.seaice, SEAICE_multDim=7) for |
| 106 |
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verification experiment global_ocean.cs32x15.seaice and update results. |
| 107 |
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o pkg/exf: |
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- new S/R EXF_GETFIELD_START to return starting-time of a forcing field |
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(according to useExfYearlyFields). |
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o pkg/cal: |
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- move calendar setting & summary (previously in cal_readparams.F) into new |
| 112 |
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S/R CAL_INIT_FIXED to be called later in the initialisation process, once |
| 113 |
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length of the simulation is set (after SET_PARMS call); This is an attempt |
| 114 |
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to fix Pb when, e.g.: pkg/longstep, modifies the length of the run. |
| 115 |
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- For safety: keep a record of pkg/cal parameter settings status |
| 116 |
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to allow to STOP if one pkg/cal S/R is called too early. |
| 117 |
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- add a stop in all basic pkg/cal subroutines if called before setting is done. |
| 118 |
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- modify cal_getdate.F: stop when nothing was returned; |
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if called with myIter=-1, simply retrun modelBaseDate (1,2 = startDate_1,_2); |
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this allows to remove "cal.h" from seaice_read_parms.F & init_mnc_vars.F. |
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checkpoint63l (2012/04/04) |
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o pkg/bbl: |
| 124 |
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- fix call to FIND_RHO_2D in bbl_calc_rho.F (case multi-tiles per proc); |
| 125 |
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update global_with_exf output.yearly.txt file. |
| 126 |
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o pkg/cal: |
| 127 |
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- start to clean-up cal_set.F ; fix for the case where baseTime is non-zero. |
| 128 |
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- remove 2 unsused and very short (1 line only) functions ; |
| 129 |
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- remove unsused subroutines from AD-Diff list. |
| 130 |
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o model/src: |
| 131 |
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- start to implement clean wait to stop in initialization S/R (config_check.F, |
| 132 |
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packages_check.F, ini_parms.F and pkg/obcs/obcs_check.F + pkg/mypackage) |
| 133 |
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o folowing PRINT_MESSAGE changes: |
| 134 |
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- remove reminder multiple print to the same file (STDOUT) when multi-threads. |
| 135 |
o pkg/bbl: |
o pkg/bbl: |
| 136 |
- modification so it can work with z* |
- modification so it can work with z* |
| 137 |
- replace deltaT with dTtracerLev(k) for asynchronous time stepping |
- replace deltaT with dTtracerLev(k) for asynchronous time stepping |
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