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revision 1.1596 by gforget, Mon Feb 13 23:45:41 2012 UTC revision 1.1735 by jmc, Wed Sep 12 15:18:58 2012 UTC
# Line 4  $Name$ Line 4  $Name$
4      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
5      ==============================      ==============================
6    
7  o pkg/seaice :  o pkg/mdsio:
8    - simplify McPhee tapering, and allow to use it with SEAICEturbFluxFormula.EQ.    - fix missing STOP in mdsio_readvec_loc.F (case ioUnit=0) when file is missing
9    1 or 2, using newly added run time parameter SEAICE_availHeatTaper.  o tools/genmake2:
10      - add similar dependences for target EXE_AD & EXE_FTL as we have for EXECUTABLE
11        (added by Alistair in version 1.51 for building without make depend);
12      - remove Header files list (H_SRC_FILES) from the dependence of targets
13         ad_input_code.f & ftl_input_code.f (not clear why it was added in the first
14        place in version 1.23): this save going through staf when unrelated header
15        file has been modified.
16       Note: for an intermediate target (e.g., ad_input_code.f or adtaf) without
17        "make depend" step, still need to do "make links" before "make adtaf".
18    o eesupp/src (+ few pkg src files) & genmake2:
19      - finish to remove ALWAYS_USE_MPI in source code that TAF does not see;
20      - no longer set ALWAYS_USE_MPI in Makefile (was done by genmake2).
21      - improve genmake2 checking for ALLOW_${PKG} in CPP_OPTIONS.h files (distinguish
22         upper/lower case ; account for space between "#" and undef/define)
23    o pkg/flt (with exch2):
24      - cleaning: fix so that it compiles; move remaining MPI calls out of flt_exch2.F;
25      - simplify threads synchronisation; fix (many issues) multi-threaded with MPI.
26    
27    checkpoint63s (2012/09/05)
28    o pkg/ecco:
29      - remove #ifdef ALLOW_SMOOTH_CORREL3D brackets.
30      - add more relevant #ifdef ALLOW_SMOOTH ones.
31      - sort out useAtmWind, useSMOOTH, ctrlSmoothCorrel2D.
32    o pkg/ctrl:
33      - CTRL_OPTIONS.h : document CPPs related to smoothing; ALLOW_SMOOTH_CORREL2D/3D,
34        ALLOW_CTRL_SMOOTH, ALLOW_SMOOTH_CTRL2D, ALLOW_SMOOTH_CTRL3D.
35      - ctrl.h : document run time params doInitXX, doMainPack, doMainUnpack, doPackDiag,
36        doSinglePrecTapelev (audodiff param!), ctrlSmoothCorrel2D (new) and
37        ctrlSmoothCorrel3D (new).
38        The added ctrlSmoothCorrel2D/3D replace the old ALLOW_SMOOTH_CORREL2D/3D CPP.
39      - ctrl_readparms.F : initialise ctrlSmoothCorrel2D/3D and read from namelist.
40      - ctrl_init.F ctrl_pack.F ctrl_unpack.F : switch off ustress/vstress
41        controls when useAtmWind, and vice versa.
42      - ctrl_map_ini_ecco.F : UVEL0, VVEL0, edtaux, edtauy cannot be smoothed as tracers.
43      - ctrl_get_gen.F : replace #ifdef ALLOW_SMOOTH_CORREL2D with
44          #ifdef ALLOW_SMOOTH, IF ctrlSmoothCorrel2D, IF useSMOOTH.
45      - ctrl_map_ini_gen.F : replace #ifdef ALLOW_SMOOTH_CORREL3D with
46          #ifdef ALLOW_SMOOTH, IF ctrlSmoothCorrel3D, IF useSMOOTH.
47      - ctrl_set_pack_xy[z].F, ctrl_set_unpack_xy[z].F:
48        replace ALLOW_SMOOTH_CORREL2D/3D brackets with ctrlSmoothCorrel2D/3D.
49    o pkg/smooth:
50      - remove un-necessary includes.
51      - remove ALLOW_SMOOTH*D and ALLOW_SMOOTH_CORREL*D brakets.
52        Those CPP options were never defined, and not necessary.
53    o model/src:
54      - fix CPP brackets in ini_mixing.F (GM_background_K belongs to gmredi).
55      - standard treatment of useSMOOTH.
56    o pkg/autodiff:
57      - add LOGICAL useGGL90inAdMode, useGGL90inFwdMode, useSALT_PLUMEinAdMode,
58        useSALT_PLUMEInFwdMode allowing to switch off ggl90 and salt_plume adjoint.
59    o pkg/exch2:
60      - add "if usingMPI" where it was missing (in exch2_rx?_cube*.template)
61        + start to remove ALWAYS_USE_MPI in source code that TAF does not see.
62      - make new S/R W2_MAP_PROCS out of w2_eeboot.F to setup exch2 CommonFlag
63        and tiles to process mapping.
64      - re-arrange 3 header files (W2_EXCH2_PARAMS.h, _BUFFER.h & _TOPOLOGY.h)
65        moving /EXCH2_FILLVAL_RX/ & /W2_EXCH2_COMMFLAG/ to W2_EXCH2_TOPOLOGY.h;
66        rename "exch2_tProc" to "W2_tileProc" and move seting of e2FillValue_RX
67        from w2_eeboot.F to w2_readparms.F.
68    o eesupp/src:
69      - set exchNeedsMemsync & exchUsesBarrier according to "usingMPI" (instead of
70        ALWAYS_USE_MPI) + moved from ini_communication_patterns.F to eeset_parms.F;
71        also move setting of exchCollectStatistics from exch_init.F to eeset_parms.F
72      - in eedie.F and all_proc_die.F, always call MPI_FINALIZE when ALLOW_USE_MPI
73        is defined (remove condition on usingMPI) to match cases where MPI_INIT
74        has been called.
75      - fix bug I put in previous modif of exch_sm_3d_rx.template (not much used);
76      - change default (non-MPI) value of myPid (from 1 to 0) to match MPI settings
77        (so that on 1 proc, get same myPid independently of usingMPI)
78      - add a stop if multi-procs but usingMPI=F ; stop also if usingMPI=T and
79        useCubedSphereExchange with EXCH-1 (safer).
80      - add "if usingMPI" where it was missing (+ start to remove ALWAYS_USE_MPI).
81    o pkg/ggl90:
82      - fix bug in filling corner mask array "mskCor" (FILL_CS_CORNER_TR_RL call)
83        used in ALLOW_GGL90_SMOOTH code.
84    o pkg/flt:
85      - fix typo in FLT_WITHOUT_Y_PERIODICITY (the effect was to ignore stopping
86        floats at the Southern end of the domain).
87    o eesupp/inc:
88      - add a list of CPP-options which can be set by Makefile (DEF_IN_MAKEFILE.h);
89        but not used (and not to be used) anywhere, just for documentation.
90    o pkg/autodiff, exf, ptracers & seaice (AD & TL output):
91      - comment out the very nasty "writeBinaryPrec = writeStatePrec" line, since:
92        a) can damage previously written records in any other multi-record files.
93        b) if needed, can easily do it cleanly, by calling S/R WRITE_REC_3D_RL/S.
94    o tools/genmake2:
95      - define variable MAKE within Makefile and use it in place of 'make';
96      - update AD_CONFIG.h (if needed) before building any of the executable
97        (forward, adjoint or tangent-lin); this involves a 2nd invocation of make;
98        and add the usual #ifndef/#define AD_CONFIG_H in AD_CONFIG.h;
99      - always print usual warning comment 'this file is automatically generated'
100        from script convert_cpp_cmd2defines (+ remove this warning from genmake2).
101    o pkg/cheapaml:
102      - updated to correspond to the code used in accepted paper (Nico Wienders).
103    o pkg/exf:
104        added run time switch useAtmWind to replace ALLOW_ATM_WIND cpp switch.
105        ALLOW_ATM_WIND now just sets the useAtmWind default (see exf_readparms.F)
106        and force defines ALLOW_BULKFORMULAE (EXF_OPTIONS.h).
107    o pkg/exf, autodiff, ctrl, ecco and seaice:
108        remove ALLOW_ATM_WIND brackets, or replace them with useAtmWind ones.
109    o pkg/ctrl, ecco:
110        allow to compile both ALLOW_U/VSTRESS_CONTROL and ALLOW_U/VWIND_CONTROL.
111        Depending on useAtmWind, one is inactive, and the other is active (see
112        exf_getffields.F/exf_getsurfacefluxes.F).
113    o tools/genmake2:
114      - improve error msg when failing in 2nd test of check_for_broken_Ff
115      - fix option '-makefile' short-name (-mf according to genmake2 -help)
116      - source local config file "genmake_local" just after processing the genmake2
117        command arguments (previously done before processing arg).
118    o pkg/grdchk:
119      - add a call to TURNOFF_MODEL_IO for Tangent-Linear run (in this case, call
120        to this routine from cost_final has been dropped in g_cost_final)
121      - improve printed information (more explicit msg, no longer using "print *,"
122         fix fcpertminus printed value).
123    o model/src:
124      - move call to COST_INIT_VARIA out of packages_init_variables.F directly
125        into initialise_varia.F (just after calling PACKAGES_INIT_VARIABLES):
126        this prevents getting cost-funct reset in adinitialise_varia recomputations.
127    o pkg/dic:
128      - move initialisation of "freefe" array from from dic_biotic_forcing.F to
129        fe_chem.F: this prevents TAF from dropping this initialisation in TLM code.
130    o pkg/grdchk:
131      - grdchk_main.F : added CALL GLOBAL_SUM_INT( ierr , myThid )
132      - grdchk_getadxx.F etc. : omit I/O if ierr.EQ.0
133    o pkg/autodiff/ctrl/grdchk :
134      - attempt to sort out what works and what does not,
135        with regard to I/O, and to warn/stop accordingly.
136    o pkg/grdchk:
137      - attempt to fix grdchk in the case of useSingleCpuIO.
138      - "if ( myProcId .EQ. grdchkwhichproc .AND. ierr .EQ. 0 )"
139       statements were moved from grdchk_main.F and into
140       grdchk_getadxx.F grdchk_getxx.F grdchk_setxx.F.
141      - a global sum is applied to record numbers icvrec/layer
142       out of grdchk_loc so that they be passed to I/O routines.
143    o pkg/smooth:
144      - fix recomputation that appeared with nlfs : use smooth_recip_hFacC,
145        smooth_hFacW, smooth_hFacS (copied at init_fixed) in 3d case.
146    o verification/testreport:
147      - add option '-tlm' for Tangent-Linear test (-adm,-oad,-tlm are all exclusive);
148      - can also use compressed (gzip) reference output file;
149      - change format (in pkg/grdchk) of TLM output (+ add forward gradient)
150        to be easier to collect by testreport.
151      - update existing TLM output (half out-of-date by more than 3 yrs).
152      - report NETCDF & LAPACK settings (from genmake2) in output dir.
153      - report run-time in each individual summary (previously only for AD test);
154        for TLM test, add also TAF version.
155      - add daily TLM test on (old) aces cluster + weekly test on baudelaire.
156    
157    checkpoint63r (2012/08/15)
158    o tools/genmake2:
159      - fix Makefile for target ftlall (+ update files to clean after make ftlall)
160    o pkg/ecco/ecco_cost_final.F :
161      - fix fc print statements (to stdout and costfunction0000) so
162        that the printed value is always after the global sum.
163    o pkg/seaice/seaice_dynsolver.F :
164      - fix ice strength assymptote at SEAICE_area_max<1
165        (no change for the standard case of SEAICE_area_max=1)
166    o some cleaning:
167      - pkg source files: ensure that all *.F files from each pkg included the
168        corresponding ${PKG}_OPTIONS.h file (except stand-alone src file which
169        only includes CPP_EEOPTIONS.h); fix S/R CTRL_SMOOTH ; update AD experiment
170        code_ad/*.F src files; add new option-file in pkg/admtlm + corresponding
171        includes;
172      - model/src: add PACKAGES_CONFIG.h wherever ALLOW_AUTODIFF[_TAMC] is used.
173      - ALLOW_DIFFKR_CONTROL: add a stop in S/R CTRL_CHECK in case ALLOW_3D_DIFFKR
174        is undef; also define /DYNVARS_DIFFKR/ common block in DYNVARS.h when
175        ALLOW_DIFFKR_CONTROL is defined, to allow to compile and reach this stop.
176      - update option-file CPP_OPTIONS.h of all AD experiments:
177        * no longer include PACKAGES_CONFIG.h ;
178        * includes ECCO_CPPOPTIONS.h if PACKAGES_CONFIG.h has been included ;
179        * def/undef ALLOW_3D_DIFFKR independently of ALLOW_DIFFKR_CONTROL (before
180          including ECCO_CPPOPTIONS.h).
181    o pkg/cost, pkg/ctrl, pkg/ecco option-file:
182      - clean-up and split content of old pkg/ecco/ECCO_CPPOPTIONS.h file into
183        separated pkg option-file (done according to old doc from ECCO_CPPOPTIONS.h,
184        not necessary accurate).
185      - add a template for option-file ECCO_CPPOPTIONS.h, mostly empty, in
186        pkg/autodiff, i.e., the 1rst pkg to compile for adjoint built, with lines to
187        deliberately break compilation (a remainder that it needs to be customized)
188      - in pkg/ecco, includes ECCO_OPTIONS.h instead of COST_OPTIONS.h
189      - rename COST_CPPOPTIONS.h to COST_OPTIONS.h
190      - rename CTRL_CPPOPTIONS.h to CTRL_OPTIONS.h
191    o tools/genamke2:
192      - check for lapack.
193    o pkg/cost and pkg/ecco : attempt to sort out some of the limiting intricacies.
194      - pkg/cost.cost_final.F : allow for use of pkg/ecco and pkg/cost cost functions
195        jointly. The exclusive ifdefs were removed, to add costs terms (when defined)
196        from both packages.
197      - the fc global sum in pkg/ecco/ecco_cost_final.F was removed accordingly.
198      - for objf_atl we use either the pkg/ecco or the pkg/cost term depending on CPPs.
199      - pkg/ecco and model/src : add CPP brackets around pkg/cost and pkg/ctrl includes
200        of "CTRL_SIZE.h" "ctrl.h" "ctrl_dummy.h" "optim.h" / "cost.h" accordingly.
201    o pkg/cost : add comments to explain special and/or untested setups.
202    o pkg/exf:
203      - use EXF_OPTIONS.h to set pkg/exf options except if done in ECCO_CPPOPTIONS.h
204        (previously, ALLOW_AUTODIFF_TAMC was controling this switch).
205    o verification/*/code_ad:
206      mimimal cleaning of AD experiments ECCO_CPPOPTIONS.h option-file:
207      - reccord when this file is included (define ECCO_CPPOPTIONS_H)
208      - remove the most obvious obsolete features (e.g., #define ALLOW_COST not
209        allowed since Oct 2003 in any option-file except in PACKAGES_CONFIG.h)
210    o pkg/seaice :
211      - added possibility to change ice strength/PRESS0 relationship to
212        HEFF, according to the following run time parameters
213        SEAICEpresPow0 :: HEFF exponent for ice strength below SEAICEpresH0 (integer, >0)
214        SEAICEpresPow1 :: HEFF exponent for ice strength above SEAICEpresH0 (integer, >0)
215        SEAICEpresH0   :: HEFF threshold for ice strength            (m)
216    o pkg/ggl90 :
217      - added run time flag mxlSurfFlag to include the code that ensure
218        mixing between first and second level (previously included as a comment)
219    o verification/1D_ocean_ice_column/input_ad/data.autodiff :
220      - add test of newly added dumpAdByRec=T option where
221        we write all records to one file per variable.
222    o verification/global_ocean.cs32x15/code_ad/CPP_OPTIONS.h :
223      - switch to #define ALLOW_BALANCE_RELAX and ALLOW_BALANCE_FLUXES
224        to check that this code is ok with taf and compiles in adjoint.
225    o pkg/autodiff :
226      - added run time param dumpAdByRec : ad dump format switch.
227        If true then write all records to one file per variable.
228        Else write one file per record (remains the default).
229      - revise seaice_ad_dump.F and exf_adjoint_snapshots_ad.F accordingly.
230    o pkg/seaice:
231     - Added SEAICEuseTILT run time switch : if set to
232       false then omit the tilt term in seaice dynamics.
233     - Fix free drift calculation.
234    o pkg/shelfice:
235      When initializing SHELFICEDragQuadratic, set default to be
236      consistent with shiCdrag in case SHELFICEuseGammaFrict is used,
237      but retain option to set it independently
238      (inconsistenty spotted by Veronique Dansereau)
239    o eesupp/inc:
240      - in EEPARAMS.h, add real-type constant for some frequently used simple number
241         (0,1,2,1/2), with name explicitly referring to RS/RL type.
242    o model/src:
243      - move balancing of relaxation terms to new S/R balance_relax.F.
244    o pkg/autodiff:
245      re-write active I/O high-level (control) S/R:
246      - rename  S/R ACTIVE_READ/WRITE_RL to ACTIVE_READ/WRITE_3D_RL
247      - add 1 more argument (useCurrentDir) to replace the "_LOC" 2nd set of S/R.
248      - use standard pkg/mdsio I/O routines (MDS_READ/WRITE_SEC_XZ/YZ  and
249        MDS_READ/WRITE_FIELD); change loops to multi-threads.
250      - update and merge active_file_control_slice.flow into active_file_control.flow
251      - update the calls in lower level S/R (active_file.F, active_file_g.F and
252        active_file_ad.F) keeping the argument list and function unchanged.
253      - also update lower-level "_LOC" version (call same S/R with "useCurrentDir
254        =.TRUE.") and remove high-level (control) _loc version (not called anymore).
255      - new low-level active I/O routines, one for each type (RL/RS), for active var
256        of various (XY,XZ,YZ) shape and level number (arguments: arrShape, myNr);
257        fix ctrl_init_wet.F & ecco_cost_weights.F by calling the new S/R with the
258        right type.
259    o autodiff and RS=real*4:
260      - call the right type (_RS instead of _RL) of S/R in few output S/R (pkg/exf
261        ad-monitor and snapshots); disable arrType='RS' in mdsio_gl*.F ;
262      - change argument type of 3-D mask argument to _RS to match type in the call
263        (in seaice_cost*.F, ctrl_*_gen.F and *ctrl_bound.F); to be continued.
264    o pkg/thsice:
265      - re-anable balanceEmPmR when useSEAICE=T with useThSIce=T.
266      - option to correct ocean fresh-water flux for imbalance of Atmos+Land
267        fresh-water flux: uniform correction or proportional to local precip.
268    o pkg/ctrl:
269      - new header file CTRL_SIZE.h for parameters maxCtrlArr2D, maxCtrlArr3D
270      - redefine CPP option ALLOW_BOTTOMDRAG_CONTROL to
271                            ALLOW_BOTTOMDRAG_CONTROL_NONGENERIC
272      - verification/hs94.1x64x5/ tests ALLOW_GENARR{2D,3D}_CONTROL
273    
274    checkpoint63q (2012/07/30)
275    o pkg/autodiff:
276      note about monitor and snap-shot of ad-variables:
277      a) need to apply ADEXCH before monitor or output of ad-vars to include
278       overlap contributions (was done for adjDump but missing for monitor).
279      b) since ADEXCH implies adding overlap values to interior array, machine
280       truncation error is expected when adding an ADEXCH call in the middle of
281       the time-stepping (although mathematically identical).
282      modifs:
283      - fix some incorrect type (RL/RS, UV/scalar) in ADEXCH calls and ad-vars
284        declaration (adEddyPsiX,adEddyPsiY in adcommon.h).
285      - add new run-time params (dumpAdVarExch & mon_AdVarExch) to select how  to
286        apply ADEXCH before monitor or snap-shot of ad-variables:
287           =0 : no ADEXCH ; =1 : do ADEXCH ; =2 : apply ADEXCH on a local copy.
288      - implement new method (copy+adexch) for snap-shot and monitor of main model
289        ad-vars (initially not used by default -> output unchanged).
290      - change default (set to 2) to use new method and update few output_adm.txt
291        with accurate ad-monitor (global_ocean.90x40x15, tutorial_global_oce_biogeo
292        and both tutorial_tracer_adjsens tests).
293      - switch 2 global_ocean.cs32x15 AD-tests to AB-2 (seaice_dynmix & thsice)
294        and turn off momDissip_In_AB in the 2 other (needed for stable AB-3).
295    o pkg/ctrl:
296      enable the use of a variable number (maxCtrlArr2D, maxCtrlArr3D) of
297      generic control variables via
298      #define ALLOW_GENARR2D_CONTROL and/or #define ALLOW_GENARR3D_CONTROL
299      Only required customization should be S/R ctrl_map_ini_genarr.F
300      (routine in repository contains example)
301    o pkg/exf:
302      - fix and refine checking of surface-relaxation setting when using EXF
303    o verification (adjoint exp):
304      - reduce length of simulation by half for experiment global_ocean.cs32x15
305        (std, seaice & seaice_dynmix) and exp tutorial_dic_adjoffline; update output.
306    o pkg/mom_common (mom_u/v_bottomdrag), pkg/shelfice (shelfice_u/v_drag)
307      - replace if statements KE.ne.0 with KE.gt.0 to avoid sqrt of negative numbers
308        of KE that can occur with aggressive optimization
309      + put quadratic bottom drag calculation in separated loops (only done if
310        using bottomDragQuadratic)
311    o model/src: CG2D_NSA
312      - clean-up:  stop if cg2dNormaliseRHS=T and AUTODIFF
313         and replace GLOBAL_SUM calls with GLOBAL_SUM_TILE.
314      - in test-exp that uses CG2D_NSA (bottom_ctrl & tutorial_tracer_adjsens),
315         change cg2d residual target to be expressed in Wunits (=> do not normalise
316         RHS ; this fix global_max Pb with TAF); update output.
317    o verification/tutorial_tracer_adjsens:
318       improve parameter consistency (and get rid of warnings):
319       - use deltaTFreeSurf=deltaTtracer (better with NonLin FreeSurf);
320       - switch Temp Adv Scheme from 81 to 80 (no limiter since theta < 0 is physical)
321       - use staggerTimeStep (for stability) in som81; use default rotation period.
322    o pkg/exch2:
323      - with empty facet: fix compact-format (W2_mapIO=1) definition (was previously
324        reset to 0 = 1 long line in X)
325    o pkg/mdsio:
326      - fix reading of dimensions from meta file for large-size domain
327    o model/src:
328      - fix saltIsActiveTr setting for IdealGas eosType (eosType is 6 character long);
329      - to refine CS-grid check, add logical flag "hasWetCSCorners": true if using
330        Cubed-Sphere Exch with CS-corners inside the domain;
331        make new S/R INI_GLOBAL_DOMAIN from code in ini_linear_phisurf.F to calculate
332        globalArea and to set hasWetCSCorners.
333      - add warning if usingCurvilinearGrid and momAdvection in flux-form (missing
334        metric terms); stop if hasWetCSCorners=T and momAdvection in flux-form.
335      - re-activate the stop if useCDscheme and hasWetCSCorners=T (previously if
336        useCDscheme and useCubedSphereExchange).
337    o pkg/seaice/seaice_growth.F :
338      - compute the SEAICE_DISABLE_HEATCONSFIX term accordingly
339        for the (.NOT.useRealFreshWaterFlux).OR.(nonlinFreeSurf.EQ.0)
340        when the previous code was not correct.
341      - in all cases diagnoze the boundary condition mismatch to SIaaflux
342      - in the case of useRealFreshWaterFlux.AND.(nonlinFreeSurf.GT.0) add
343        that term to QNET (essentially to set the melt/freeze water to 0degC).
344        when SEAICEheatConsFix is true, so that the ocean+ice budget heat is closed.
345    o verification/global_ocean.cs32x15/input.seaice :
346      - add SEAICEheatConsFix in data.seaice, ensuring closed ocean+ice heat budget.
347      - add diagnostics (commented out) for budget test using my matlab codes (gcmfaces).
348      - update results (output.seaice.txt) accordingly.
349    o verification/lab_sea/input/data.seaice :
350      - remove SEAICEheatConsFix, which is now be tested
351        in global_ocean.cs32x15. The presently coded fix
352        is only consistent with real fresh water + nlfs.
353      - update results (output.txt) accordingly.
354    o pkg/salt_plume: added diagnotic for salt tendency (oceSPtnd).
355    o AD_CONFIG.h file:
356      - in genmake2: remove "#undef ALLOW_ECCO_OPTIMIZATION" from AD_CONFIG.h;
357      - remove #include "AD_CONFIG.h" from all included OPTIONS files and
358        add it explicitly in each fortran src file where it is needed.
359        motivation: header file AD_CONFIG.h is generated/modified after "make depend"
360        thus introducing potentially wrong dependency; therefore, better to include
361        it only where it's really needed, and after any other included OPTIONS file
362        (less tempting to bring conditional includes according to ALLOW_ADJOINT_RUN
363        or ALLOW_TANGENTLINEAR_RUN).
364    
365    checkpoint63p (2012/07/06)
366    o pkg/autodiff:
367      - rename S/R INI_AUTODIFF to AUTODIFF_INIT_VARIA ;
368      - create new header file "AUTODIFF_PARAMS.h" for pkg/autodiff parameters
369        which are now read from new parameter file "data.autodiff" (inAdExact
370        previously in "data", use{KPP/GMRedi/SEAICE}inAdMode previously in data.pkg)
371      - add file "data.autodiff" in all verification/*/input_ad/ directories.
372      - add run-time parameter to turn On/Off SEAICEuseFREEDRIFT in adjoint/forward
373        mode (used in global_ocean.cs32x15.seaice_dynmix test exp.)
374    o verification/tutorial_tracer_adjsens/
375      - add extra sub-verification which uses "SOM" advection scheme
376        (2nd Order-Moment Advection Scheme, Prather Limiter) with
377          #define GAD_ALLOW_TS_SOM_ADV in GAD_OPTIONS.h
378        and in data:
379          multiDimAdvection=.TRUE.,
380          tempAdvScheme=81,
381          saltAdvScheme=81,
382    o model/src:
383      - introduce ALLOW_BALANCE_RELAX which allow the removal
384       of the global mean of relaxation terms by setting
385       balanceThetaClimRelax and balanceSaltClimRelax
386      - disable balanceEmPmR and balanceQnet in the case when useSeaice.
387       This case is now treated appropriately in seaice_growth.F
388    o pkg/seaice:
389      - do balanceEmPmR and balanceQnet based on the net fluxes
390        (SItflux) that enter the ocean+ice system rather than QNET
391        and EMPMR. Works best in real fresh water.
392      - SIatmFW, SIatmQnet, and SItflux computations had to be moved
393        out of the diagnotics bloc, and stored in global arrays.
394    
395    checkpoint63o (2012/06/29)
396    o vertical mixing schemes:
397      - remove unused S/R CALC_BUOYANCY (left from branch-atmos merging)
398      - replace computation of density (in Function STATE1, opps_calc.F) by a call
399        to S/R FIND_RHO_SCALAR
400      - pass sigmaR to S/R PP81_CALC, MY82_CALC (but not yet used) and to GGL90_CALC
401        and use it for N^2 calculation in ggl90_calc.F (save 2 density computations);
402        affects output (vermix.ggl90) at truncation level.
403    o testreport:
404      - change adjustment of SIZE.h for mpi+mth testing: preserve enough tiles
405        (nSx,nSy) for the number of threads (from eedata.mth)
406    o model/src:
407      - remove 2nd set of calls at the top of initialise_varia.F (Adjoint part)
408        related to Non_Lin Free-Surf or Bottom-Control (but not longer necessary).
409    o verification/tutorial_tracer_adjsens/
410      - compile with ALLOW_CG2D_NSA
411      - run with nonlinFreeSurf=3
412      - update reference output_adm.txt
413    o tools/genmake2:
414      - add "-DHAVE_NETCDF" to the DEFINES list when NetCDF is available ;
415        refine usePROFILES switching off (only when NetCDF is not available).
416    o verification (atmospheric set-up):
417      - change eosType='IDEALGAS' to eosType='IDEALG' to match variable declaration
418    o pkg/profiles : refine profiles and files handling.
419    o model/src and pkg/ecco : introduce run-time switch usePROFILES.
420    o model/src/the_main_loop.F, forward_step.F and pkg/exf/EXF_OPTIONS.h :
421      - changes to use model/src/the_main_loop.F rather than the ecco version
422        in ecco type adjoint runs.
423    o model/src:
424      - move computation of recip of grid distance & area from INI_MASKS_ETC to INI_GRID
425      - move setting of h0Fac[C,W,S] from INI_LINEAR_PHISURF to INI_MASKS_ETC
426      - update_masks_etc.F: rename SMOOTH*_R4,R8 function to the corresponding type (RS,RL)
427    o model/src:
428      - fix S/R UPDATE_CG2D for ALLOW_DEPTH_CONTROL case (was empty before);
429        update output of test experiment bottom_ctrl_5x5.
430    o pkg/generic_advdiff:
431      - implement vertical bi-harmonic diffusion (for now, only for T & S and
432        only explicitly).
433    o verification/bottom_ctrl_5x5/
434      update reference output (results changed quite some time ago,
435      not sure when; but new reference results look ok in terms of grdchk)
436    o verification/1D_ocean_ice_column/
437      For verification purposes, the exact adjoint rather than an approx.
438      should be used (e.g., to comare against F.D. or TLM).
439      removed autodiff_inadmode*_ad.F routines in code_ad/
440      Update results/ accordingly.
441    o pkg/cal:
442      - change cal_getdate.F so that output date is function of input time only
443        (less ambiguous, not mixed up with input iteration number).
444      - fix calendarDumps for non-zero phase-lag (S/R CAL_TIME2DUMP).
445    o pkg/diagnostics:
446      - implement calendarDumps also for stats-diags
447      - implement calendarDumps also for snap-shot output (negative freq)
448      - for now, ignores calendarDumps if non-zero phase-lag.
449    
450    checkpoint63n (2012/06/04)
451    o model/src:
452      - recompute rSurfW & S to ensure consistent column thickness (needed for rStar)
453        between Sum_k(hFac*drF) and rSurf-rLow, for now only when using pkg/shelfice;
454      - use h0FacC, W & S to compute hFac_surfC, W & S in calc_surf_dr.F (more
455        similar to calc_r_star.F); update results of experiment internal_wave and
456        tutorial_global_oce_in_p (affected @ truncation level).
457    o pkg/shelfice:
458      - add parameterisation of advective-diffusive flux into the ice shelf
459        according to Holland and Jenkins (1999), eq.22-33, as suggested by Jan De Ryd
460      - simply eps3/3a computation
461    o eesupp:
462     - add new CPP option (DISCONNECTED_TILES) to disconnect tiles (no exchange
463       between tiles, just fill-in edges assuming locally periodic subdomain) and
464       add corresponding exchange subroutines (EXCH0);
465     - new CG-solver version (_EX0) for disconnected-tiles special case.
466    o model/src (CG-solvers):
467     - modify Single-Reduction version (CG2D_SR) in case cg2dMaxIters is reached
468       (similar final residual output and max-Iter number as with standard version);
469     - allows to store and use lowest-residual solution (standard & _SR versions);
470     - cleaning up (remove old, commented out code, LETS_MAKE_JAM ...).
471     - by default, also compile CG2D_SR version (define ALLOW_SRCG in CPP_OPTIONS.h)
472    o eesup/src:
473     - global_vec_sum.F cleaning: add a BARRIER ; update comments ; remove ndef
474       ALWAYS_USE_MPI (no longer needed after fixing usingMPI settings - March 2012)
475    o pkg/salt_plume added to lab_sea/input_ad.noseaicedyn
476    
477    checkpoint63m (2012/04/27)
478    o pkg/shelfice:
479     - account for partical cells in surface level below ice-shelf for hydrostatic
480       pressure calculion (set uniformFreeSurfLev to F); update isomip experiments.
481    o ad test experiments:
482     - update and rename to "ad_optfile.local" local AD-optfile specific to a
483       particular adjoint verification experiment (in verification/*/code_ad/)
484    o pkg/seaice & pkg/exf:
485     - Part two of ECCO-CLIVAR code merges.
486       Completes merge of seaice area relax. code.
487       Requires unified CPP option EXF_ALLOW_SEAICE_RELAX
488       to be set in EXF_OPTIONS.h since this pkg controls its I/O
489       (and avoids second CPP option in SEAICE_OPTIONS.h)
490     - change default value of costIceStart & costIceEnd to a valid date.
491     - add snowPrecip to HSNOW in seaice_growth
492    o pkg/ptracers:
493     - move ptracers summary and setup check into separated S/R ; add a check for
494       valid PTRACERS_Iter0 value (error+stop or just warning).
495    o pkg/cal (+ pkg/ecco):
496     - avoid calling a S/R with 2 times the same arg (FWD: unless both are only used
497       as input; and for AD, unless both are not differentiable (e.g., k index)).
498    o model/src:
499     - define internal flag "uniformFreeSurfLev" (=T when free-surface level-index
500       is everywhere k=1) to speed-up some calculations (by pass kSurf reference);
501       temporary set to usingZCoords value (to be changed to F when using shelfice).
502     - hydrostatic pressure: implement partial cell near the surface also for
503       Z-coordinates (for the case where uniformFreeSurfLev=F); replace test on
504       usingZCoords with test on uniformFreeSurfLev where needed (in NonHyd code).
505    o pkg/ctrl/ctrl_init.F:
506     - add a formal parameter to s/r ctrl_init_rec to print
507       xx_$(ctrl_valiable)_file for easier debugging
508     - move call of cal_* routines into the if-block where they are really
509       needed so that xx_$(ctrl_variable)_period can be 0 or -12 without having
510       to specify a startdate
511    o pkg/seaice:
512     - update comments in SEAICE_OPTIONS.h (+ similar update of lab_sea/code and
513       global_ocean.cs32x15/code versions).
514     - turn on seaice Multi-category (in data.seaice, SEAICE_multDim=7) for
515       verification experiment global_ocean.cs32x15.seaice and update results.
516    o pkg/exf:
517     - new S/R EXF_GETFIELD_START to return starting-time of a forcing field
518       (according to useExfYearlyFields).
519    o pkg/cal:
520     - move calendar setting & summary (previously in cal_readparams.F) into new
521       S/R CAL_INIT_FIXED to be called later in the initialisation process, once
522       length of the simulation is set (after SET_PARMS call); This is an attempt
523       to fix Pb when, e.g.: pkg/longstep, modifies the length of the run.
524     - For safety: keep a record of pkg/cal parameter settings status
525               to allow to STOP if one pkg/cal S/R is called too early.
526     - add a stop in all basic pkg/cal subroutines if called before setting is done.
527     - modify cal_getdate.F: stop when nothing was returned;
528       if called with myIter=-1, simply retrun modelBaseDate (1,2 = startDate_1,_2);
529       this allows to remove "cal.h" from seaice_read_parms.F & init_mnc_vars.F.
530    
531    checkpoint63l (2012/04/04)
532    o pkg/bbl:
533      - fix call to FIND_RHO_2D in bbl_calc_rho.F (case multi-tiles per proc);
534        update global_with_exf output.yearly.txt file.
535    o pkg/cal:
536      - start to clean-up cal_set.F ; fix for the case where baseTime is non-zero.
537      - remove 2 unsused and very short (1 line only) functions ;
538      - remove unsused subroutines from AD-Diff list.
539    o model/src:
540      - start to implement clean wait to stop in initialization S/R (config_check.F,
541         packages_check.F, ini_parms.F and pkg/obcs/obcs_check.F + pkg/mypackage)
542    o folowing PRINT_MESSAGE changes:
543      - remove reminder multiple print to the same file (STDOUT) when multi-threads.
544    o pkg/bbl:
545      - modification so it can work with z*
546      - replace deltaT with dTtracerLev(k) for asynchronous time stepping
547      - global_with_exf/input.yearly verification; changes output.yearly.txt
548    o eesupp/src:
549      - PRINT_MESSAGE: use OpenMP critical instruction (similar to PRINT_ERROR);
550        writing to unit 0 (if unit=errorMessageUnit) extended to the case myThid=1
551      - CHECK_THREADS: specific code if using OpenMP threading: improve checking of
552        # of threads across processors (e.g., different env OMP_NUM_THREADS setting)
553      - improve special preliminary call to EESET_PARMS (if eedata is read 2 times).
554      - when using MPI, always set usingMPI=T ; set default accordingly and stop
555        if not consistent.
556      - ALL_PROC_DIE: add a BARRIER after MPI_FINALIZE call ; skip this when thread
557        argument is zero (in case called within single-thread section).
558    o pkg/fizhi:
559        clean-up turbulence cold-start switch: decided in fizhi_init_vars.F, stored
560        in common bloc (fizhi_coms.h) and then passed as argument up to S/R TURBIO.
561    o pkg/exch2:
562      - add argument "updateCorners" to S/R exch2_get_uv_bounds (enable to
563        activate EXCH_IGNORE_CORNERS in vector EXCH S/R).
564      - switch 1rst EXCH call to IGNORE_CORNERS (instead of UPDATE_CORNERS)
565        but keep the 2nd with UPDATE_CORNERS: this prevents overwriting good data
566        with bad ones coming from a not-yet-updated halo.
567        This should fix the problem when sNx <> sNy and GCD(sNx,sNy) < 2*Olx.
568    o pkg/frazil:
569        move FrzForcT diag from frazil_diagnostics_state.F to frazil_calc_rhs.F
570        http://mitgcm.org/pipermail/mitgcm-devel/2012-March/005384.html
571    o model/src/config_check.F: add a check for OLx>sNx/OLy>sNy
572    o verification/lab_sea
573      * #undef SEAICE_EXCLUDE_FOR_EXACT_AD_TESTING
574      * #define ALLOW_SST_CONTROL & ALLOW_SST_CONTROL
575      * nTimeSteps 3 -> 4
576      * changed reference output accordingly
577    o pkg/ctrl:
578      * fix ctrl_get_gen for xx_sst, xx_sss
579    o pkg/fizhi:
580      - fix 2 calls to S/R GRD2MSC (argument igrd) in update_earth_exports.F
581        update results of exp. fizhi-cs-32x32x40 (fail with only 6 digits for cg2d)
582      - by default, use new version of S/R GETPWHERE (#define TRY_NEW_GETPWHERE);
583        fix few out-of-bounds indices in referencing vars (initialise igrd to 1);
584        clean-up fizhi_turb.F (remove unused & uninitialised qdiaglsm array).
585    o pkg/gmredi:
586      - add diagnostic of Redi (main diagnonal) vertical diffusive flux of Temp
587    o pkg/fizhi:
588      - fix few initialisation and multi-tile Pb: aqualev & gridalt now pass the
589        (old)aces open64 tuv test.
590    o pkg/icefront: fix bug and reorder loop in icefront_init_varia.F
591    o pkg/mom_vecinv:
592      - fix 1 loop range in mom_vecinv.F to be like all the other loops which
593        set/update gu,gv/Diss (fix Pb of uninitialised fVerUkp in admom_vecinv
594        with non-lin free-surf).
595    o model/src: move k-loop outside of i/j-loops when (re-)computing R_low
596      in ini/update_masks_etc.F in order to avoid -O3 optimization problems with
597      some compilers (gfortran 4.6.0 on MacOS)
598    o momentum:
599      - separate fVer?(:,:,kUp) & fVer?(:,:,kDown) in argument list of MOM_FLUXFORM
600        & MOM_VECINV subroutines (to help TAF). This fixes Pb of uninitialised
601        fVer?(kUp) in admom_fluxform with non-lin free-surf or bottom control.
602    
603    checkpoint63k (2012/03/17)
604    o model/src:
605       - selectAddFluid (ALLOW_ADDFLUID): add missing term in horizontal momentum
606         flux-form (mom_fluxform.F) and vertical momentum (calc_gw.F) equations.
607       - SOLVE_DIAGONAL: switch default to use adjoinable & vectorized version
608         (#undef SOLVE_DIAGONAL_LOWMEMORY); update output of exp. front_relax.bvp.
609    o model/src: solve_*diagonal.F
610       - replace division with multiplication by inverse (similar to original version)
611         update output of AD exp. global_ocean.90x40x15.
612       - fix pkg/gmredi/gmredi_calc_psi_bvp.F & pkg/ggl90/ggl90_calc.F
613         to enable the use of the vectorized & differentiable solve_tridiagonal.F
614       - test exp. global_ocean.90x40x15/input_ad: switch to advection scheme 20 for
615         vertical advection (to get solve_tridiagonal tested in AD mode).
616    o pkg/seaice: ECCO-CLIVAR merge:
617      1. seaice AREA relaxation
618         * CPP option: SEAICE_ALLOW_AREA_RELAXATION
619         * runtime flag: SEAICE_tauAreaObsRelax
620      2. modified global mean cost imbalance code: CPP option
621          ALLOW_SSH_GLOBMEAN_COST_CONTRIBUTION
622    o another iteration on solve_*diagonal.F
623       Make choices independent of AUTODIFF
624       Default will be the adjoinable vectorized version.
625       Alternative choices are:
626       * non-adjoinable original version with low memory footprint:
627         #define SOLVE_DIAGONAL_LOWMEMORY
628       * still adjoinable but does not vectorize (k as inner-most loop):
629         #define SOLVE_DIAGONAL_KINNER (keeping SOLVE_DIAGONAL_LOWMEMORY undef)
630    o testreport
631     - add option to use a home made wrapper around "make"
632     - remove MITGCM_IEEE env. variable (no longer active)
633    o pkg/shelfice
634     - improve computation of friction velocity for velocity dependent
635       exchange coefficients: include velocities into SHELFICEBoundaryLayer
636       block to average velocities vertically
637     - add TAF store directives for SHI_ALLOW_GAMMAFRICT
638    o Modify diagonal solvers, now three versions (upon request):
639      #ifndef SOLVE_DIAGONAL_AUTODIFF
640        1. default version (dating back a while ago)
641      #else /* def SOLVE_DIAGONAL_AUTODIFF */
642      # ifdef SOLVE_DIAGONAL_KINNER
643        2. adjoinable version with k-innermost loop (G. Forget)
644      # else
645        3. adjoinable vectorized version of 2.
646      # endif
647      #endif /* SOLVE_DIAGONAL_AUTODIFF */
648      All flags are currently set within routines, but could/should be moved to CPP-options.
649      Array bounds for 1. are as before, for 2.,3. cover the entire domain
650      (could be changed for 1. too).
651    o verification/lab_sea (fwd):
652      - update the 4 fwd lab_sea test experiment: no longer SEAICE_GROWTH_LEGACY,
653        use 7 categories (except hb87), new solve4temp params (except salt_plume),
654        constant salinity (=4) or variable salinity (salt_plume) done through
655        SItracer.
656    o pkg/seaice:
657      - rename parameters: SIsalFrac to SEAICE_saltFrac & SIsal0 to SEAICE_salt0;
658      - remove old parameters ( SEAICE_freeze, SEAICEturbFluxFormula, SEAICE_gamma_t,
659         SEAICE_gamma_t_frz, SEAICE_availHeatTaper & SEAICE_availHeatFracFrz)
660        from SEAICE_PARMS.h ; still need to fix seaice_cost_sst.F (broken when
661        SEAICE_freeze got retired) but already better than previously with
662        SEAICE_freeze=123456.7 deg.C;
663      - move setting of facOpenGrow/Melt from SEAICE_INIT_FIXED to SEAICE_READPARMS
664        (safer multi-threaded setting); always set SEAICEuseEVP;
665      - setting of ocean-ice turb. flux coeff: moved from SEAICE_CHECK to
666        SEAICE_READPARMS & SEAICE_INIT_FIXED (this fixes wrong summary report);
667        stop if multiple specifications for the same coeff; make sure default
668        SEAICE_mcPheePiston is compatible with drF(1) & deltaT.
669    o pkg/obcs:
670      - allow to switch to upwind 1rst order advection scheme for the advective
671        flux computation at the open-boundary; disabled for adjoint built.
672    o pkg/ptracers:
673      - rename PTRACERS_RESTART.h -> PTRACERS_START.h
674      - rename ptracers_fields_blocking_exchanges.F -> ptracers_fields_blocking_exch.F
675      - add parameter to decide when to start a tracer; use internal flag to
676        know which tracer to step-forward; switch this internal flag at the top
677        of forward_step.F (new S/R PTRACERS_SWITCH_ONOFF); for now, not enabled
678        for adjoint built.
679    o pkg/seaice:
680      - add SEAICE_SIZE.h anywhere in the code where SEAICE.h is included ;
681      - move MULTDIM declaration and setting from SEAICE.h to SEAICE_SIZE.h ;
682      - keep experiment offline_exf_seaice truly single category (set MULTDIM=1).
683    o pkg/ecco:
684      - fix writing of output file DiagnosCost_ClimSalt/Theta
685        and DiagnosCost_DriftSalt/Theta (if multi-tiles per proc).
686    o pkg/seaice:
687      - add missing initialisation of COR_ICE array in dynsolver.F
688      - merging SEAICE_MULTICATEGORY define and undef cases. Now the same code is
689        compiled either way, and is tested in all exps (multidim was only tested
690        in lab_sea ad before).
691      - cosmetic change to prepare for future addition of ITD. no change to results.
692        no defaults change.
693      - added run time param SEAICE_multDim (7 for SEAICE_MULTICATEGORY, 1 otherwise).
694      - by lack of adequate verification experiments, I further used custom versions
695        of global_ocean.cs32x15 to test multicat or not, with pickup or not. All
696        should be correct.
697      - avoid recomputations in ad.
698    o array initialisation in adjoint mode:
699      1) pkg/mom_common/mom_calc_ke.F:
700        add full array initialisation of KE inside mom_calc_ke.F (ALLOW_AUTODIFF_TAMC):
701        The S/R which calls MOM_CALC_KE initialises KE but in some recomputation
702        part this initialisation is gone, resulting in Floating Point Exception
703        (caught by open64 compiler with debug option).
704      2) model/src/convective_weights.F
705        set output convectCount over the full array range (instead of doing
706        an update): this fix a similar issue when called within recomputation (adjoint)
707        which could by-pass the initialisation (normally done in the caller S/R).
708    o pkg/seaice:
709      - final version of turbulent flux params, as agreed at MIT ice meet:
710           SEAICE_mcPheePiston (default is ~ 0.000875)
711           SEAICE_mcPheeTaper (default is 0.)
712           SEAICE_frazilFrac (defualt is 1.)
713           SEAICE_mcPheeStepFunc (default is false)
714      - changes results at trunction error level
715      - ifdef SEAICE_EXTERNAL_FLUXES, disallow SEAICE_waterAlbedo
716    o added pkg/frazil:
717      - see frazil_description.tex for details
718      - verification experiment is global_with_exf/input.yearly; changes output.yearly.txt
719    o pkg/shelfice/shelfice_thermodynamics.F
720      - fix exponents for velocity dependent exchange coefficients: change
721        from 2/3(=0) to 0.66666666666666667
722      - move computation of velocity dependent exchange coefficients into
723        separate loop, so that it applies to both thermodynamics
724      - move some divisions by constants out of loops
725    
726    checkpoint63j (2012/02/16)
727    o pkg/seaice:
728      - overhaul of seaice_summary.F after feb 2012 clean-up of seaice_growth.F etc.
729      - SItracer:  added run time params, and allow coupling to ocn salinity.
730    o pkg/seaice: remove (almost) all divisions by constants within loops
731      in seaice_growth.F and seaice_solve4temp.F, this changes (only) the cg2d
732      results of global_ocean.cs32x15.seaice from 16 to 11 digits (but only
733      those, caused by 1/QI -> recip_QI) -> update output.seaice.txt,
734      output_adm.seaice_dynmix.txt and also lab_sea: output_adm.evp.txt
735    o pkg/seaice :
736      - simplify McPhee tapering, and allow to use it with SEAICEturbFluxFormula
737        = 1 or 2, using newly added run time parameter SEAICE_availHeatTaper.
738    - fix d_AREAbyATM, d_AREAbyOCN, d_AREAbyICE diags I broke in r1.148.    - fix d_AREAbyATM, d_AREAbyOCN, d_AREAbyICE diags I broke in r1.148.
739    - add permanent SItflux diag that corresponds to TFLUX but includes    - add permanent SItflux diag that corresponds to TFLUX but includes
740    ice+snow. Hence SItflux-TFLUX should match the ice+snow heat budget.      ice+snow. Hence SItflux-TFLUX should match the ice+snow heat budget.
741    - allow activation/testing of a fix for suspected missing term in    - allow activation/testing of a fix for suspected missing term in
742    ocn-ice heat budget (to be confirmed). To test this, you want to      ocn-ice heat budget (to be confirmed). To test this, you want to
743    undef SEAICE_DISABLE_HEATCONSFIX, and then set the run time param      undef SEAICE_DISABLE_HEATCONSFIX, and then set the run time param
744    SEAICEheatConsFix to .TRUE. that also allows the 'SIaaflux' diagnostic.      SEAICEheatConsFix to .TRUE. that also allows the 'SIaaflux' diagnostic.
745    - no change in results, fwd or ad.    - no change in results, fwd or ad.
746  o global_ocean.cs32x15/results: three changes following from the pkg/seaice commit below.  o global_ocean.cs32x15/results: 3 changes following from the pkg/seaice commit below:
747    - switch to variable freezing point.    - switch to variable freezing point.
748         Results change : cg2d -> 1 digits; ad -> 3-6-6 digits.         Results change : cg2d -> 1 digits; ad -> 3-6-6 digits.
749    - bug fix : the sublimation term that was missing is now activated.    - bug fix : the sublimation term that was missing is now activated.
750         Results change : cg2d -> 2 digits; ad -> 8-6-6 digits.         Results change : cg2d -> 2 digits; ad -> 8-6-6 digits.
751    - bug fix : flooding sign term for SIsal0.NE.0.    - bug fix : flooding sign term for SIsal0.NE.0.
752         Result change : cg2d -> 8 digits; ad -> 11-12-9 digits.         Result change : cg2d -> 8 digits; ad -> 11-12-9 digits.
753  o pkg/seaice:  o pkg/seaice:
754    - unified freezing point treatment : the old SEAICE_VARIABLE_FREEZING_POINT    - unified freezing point treatment : the old SEAICE_VARIABLE_FREEZING_POINT
755   is now the default, and the old default constant freezing point is recovered with      is now the default, and the old default constant freezing point is recovered
756   SEAICE_tempFrz0    = -1.96,      with SEAICE_tempFrz0    = -1.96,
757   SEAICE_dTempFrz_dS = 0.,           SEAICE_dTempFrz_dS = 0.,
758    - retire SEAICE_freeze that was the old way of specifycing the constant freezing point.    - retire SEAICE_freeze (= the old way of specifycing the constant freezing point)
759    - remove ALLOW_SEAICE_FLOODING brackets; run time switch is already there.    - remove ALLOW_SEAICE_FLOODING brackets; run time switch is already there.
760    - bug fix (thanks to M. Losch) : the sublimation term that was missing is now    - bug fix (thanks to M. Losch) : the sublimation term that was missing is now
761   activated. To reproduce old results that had this bug define SEAICE_DISABLE_SUBLIM.      activated. To reproduce old results with this bug define SEAICE_DISABLE_SUBLIM.
762    - bug fix (silly me) : flooding sign term (seaice_growth.F r 1.149line 1211)    - bug fix (silly me) : flooding sign term (seaice_growth.F r 1.149line 1211)
763   was wrong for SIsal0.NE.0. Changes cs32x15 results (see above item for detail).      was wrong for SIsal0.NE.0. Changes cs32x15 results (see above item for detail).
764    - bug fix (thanks to O. Jahn) : area loss for melting  got messed up in    - bug fix (thanks to O. Jahn) : area loss for melting  got messed up in
765   seaice_growth r149 for legacy branch (no results change).      seaice_growth r149 for legacy branch (no results change).
766    - introduce SEAICE_CAP_SUBLIM : caps sublimation heat flux in solve4temp (code from I. Fenty).    - introduce SEAICE_CAP_SUBLIM : caps sublimation heat flux in solve4temp (code
767    - results did not change except for global_ocean.cs32x15, mostly due to the switch      from I. Fenty).
768    to variable freezing point (see above item for detail).    - results did not change except for global_ocean.cs32x15, mostly due to the
769        switch to variable freezing point (see above item for detail).
770  o pkg/thsice:  o pkg/thsice:
771    - fix and simplify interface to salt_plume pkg ; diagnose directly amount of    - fix and simplify interface to salt_plume pkg ; diagnose directly amount of
772      seawater freezing in thsice_calc_thickn (not used).      seawater freezing in thsice_calc_thickn (not used).
773  o pkg/seaice: turbulent flux term specification via run time params.  o pkg/seaice: turbulent flux term specification via run time params.
774    - replace CPP switches with run time switches to facilitate testing    - replace CPP switches with run time switches to facilitate testing
775    - retired CPPs : MCPHEE_OCEAN_ICE_HEAT_FLUX, GRADIENT_MIXED_LAYER_TURBULENCE_FACTOR    - retired CPPs : MCPHEE_OCEAN_ICE_HEAT_FLUX,
776                       GRADIENT_MIXED_LAYER_TURBULENCE_FACTOR
777    - added runtime parameter : SEAICEturbFluxFormula    - added runtime parameter : SEAICEturbFluxFormula
778    - move Mcphee constants to SEAICE_PARAMS.h    - move Mcphee constants to SEAICE_PARAMS.h
779    - seaice_readparms.F : read turbulent flux term params (SEAICEturbFluxFormula;    - seaice_readparms.F : read turbulent flux term params (SEAICEturbFluxFormula;
780      SEAICE_availHeatFrac/Frz, or SEAICE_gamma_t/_frz if apply); remove               SEAICE_availHeatFrac/Frz, or SEAICE_gamma_t/_frz if apply);
781      seaice_summary call (moved to seaice_init_fixed)               remove seaice_summary call (moved to seaice_init_fixed)
782    - seaice_init_fixed.F : set SEAICE_availHeatFrac/Frz depending on    - seaice_init_fixed.F : set SEAICE_availHeatFrac/Frz depending on
783      SEAICEturbFluxFormula, and seaice_summary call (moved from seaice_readparms)      SEAICEturbFluxFormula, and seaice_summary call (moved from seaice_readparms)
784    - seaice_summary.F : add missing report of read turbulent flux term set up (and SITRACER).    - seaice_summary.F : add missing report of read turbulent flux term set up
785    - seaice_check.F : check range; inform and stop if retired CPPs are used (incl. SEAICE_AGE).                         and SITRACER.
786      - seaice_check.F : check range; inform and stop if retired CPPs are used
787                         (incl. SEAICE_AGE).
788    - seaice_growth.F : unified use of SEAICE_availHeatFrac/Frz, without    - seaice_growth.F : unified use of SEAICE_availHeatFrac/Frz, without
789          CPP switch, same computation as before for the different options.           CPP switch, same computation as before for the different options.
790    - change results at the truncation level.    - change results at the truncation level.
791  o pkg/seaice:  o pkg/seaice:
792    - remove un-used parameters LAD & MAX_TICE ; add new run-time parameters:    - remove un-used parameters LAD & MAX_TICE ; add new run-time parameters:
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