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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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o pkg/seaice |
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- fix diagnostics of principal stress components for EVP |
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- add optional diagnostics of non-linear convergence for LSOR solver |
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- make maximum zeta a runtime parameter |
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o model/src (3-d solver): |
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Undo modif from Dec 12, 2005 (solve_for_pressure.F cvs version v.49), |
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which consisted in removing the Surf. Non-Hydrostatic pressure from the |
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whole column and adding it to Eta (inspired from Casualli, 1999): |
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Only affects 3-D solver initial guess and only if using ExactConserv, |
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but tests did show a degradation of solver convergence. For this reason, |
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decide to disable this piece of code. |
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to recover previous version, just set zeroPsNH = exactConserv (line 78). |
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Update output of exp. global_ocean.cs32x15.viscA4 & hs94.cs-32x32x5.impIGW |
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o pkg/ggl90: |
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- fix previous modif (unfortunatly has not been documented here). |
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o pkg/seaice/autodiff: |
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- add CPP flag to include clipping of zeta in EVP code; |
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although clipping of zeta is not necessary for EVP and not recommended |
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it was done by default, now clipping is disabled by default |
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- modify computation and store zetaC/Z in seaice_evp for TAF |
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- add CPP-flag SEAICE_ALLOW_CLIPVELS (undefined by default) |
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- change seaice_calc_viscosities/strainrates for better |
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vectorization after AD by TAF |
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- rearrange common blocks in SEAICE.h once again for easier dumps of |
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adjoint output, adjust adcommon.h and g_common.h |
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- change flux form of default advection scheme for better vectorization |
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of adjoint code |
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- modify lab_sea/input.lsr to test the flux form of default advection |
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scheme |
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o autodiff: fix seaice fields in g_common.h (left over from 3 to 1 level |
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transition in checkpoint61r) |
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checkpoint61x |
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o adjoint: adding two new verification experiments |
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* tutorial_global_biogeo: an online dic sensitivity experiment |
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(work with G. Forget) |
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* tutorial_dic_adjoffline: an offline dic sensitivity experiment |
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(an update of the Dutkiewicz et al., 2006 paper) |
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Both use the same CO2FLUX cost function, but different controls |
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Gradient checks look good, but some recomp. could still be traightened out |
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Should add xx_dic control variable to test at some point |
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o model/src: |
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add run-time parameters to check and/or mask initial Temp & Salt |
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o pkg/ptracers: |
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apply zonal filter (if used) to all passive tracers |
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checkpoint61w |
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o adjoint: |
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* update and finish work on adjoint of dic package (G. Forget) |
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* start adjoint of offline package |
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* bug fix for cube-sphere TLM code (active_file_g.F) |
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o tutorial_global_oce_optim: |
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now tested with 4 tiles (change data.grdchk and update output_adm.txt) |
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and add SIZE.h_mpi for MPI testing |
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o pkg autodiff |
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- fix bug in autodiff_restore |
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- make genmake2 remove comments and empty lines from ad_input_code.f in |
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order to reduce file size (new script file remove_comments_sed) |
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o allows to specify vertical profile of vertical viscosity (viscArNr) |
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o pkg autodiff |
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autodiff_ini_model_io: comment out writing of grid information to netcdf |
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files, because at this time the grid fields are a bunch of zeros |
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(this is analogous to ini_mnc_vars.F) |
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o pkg seaice/autodiff: |
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left-over from removing the 3-time-level fields: |
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- small rearrangement of common blocks (SEAICE.h) |
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- fix field declaration in order to get meaningful output in |
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adseaice.*.nc (adcommon.h) |
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o pkg obcs: |
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- go through NH code only if nonHydrostatic=T |
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- fix restart for Orlanski (Hydrostatic; still to fix NH+Orlanski restart) |
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- move call to OBCS_CALC before SEAICE_MODEL which needs seaice-obc fields |
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=> Update output of experiment seaice_obcs |
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- useOBCSbalance: code is wrong with multi-tile / proc: add a stop. |
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- fix NH+Orlanski restart (add wvel OBC value in pickup file) |
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- fix restart for useOBCSprescribe + useEXF |
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o pkg ctrl |
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- make obcs as control parameter work also with useSingleCPUio |
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- replace a few sny and snx by Ny and Nx to be consistent with |
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ctrl_set_globfld_x/yz.F |
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o pkg seaice |
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- re-introduce global field frWtrAtm for the case of |
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ALLOW_MEAN_SFLUX_COST_CONTRIBUTION defined (SEAICE.h, seaice_growth.F) |
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- catch the case of an empty filename in seaice_cost_init_fixed.F |
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o pkg ecco: |
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- small bug fixes in the_main_loop |
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. fix order of monitor arguments |
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. change SEAICE_MULTILEVEL to SEAICE_MULTICATEGORY |
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. move include DYNVARS.h up outside the ALLOW_AUTODIFF_TAMC block so |
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that ALLOW_ECCO_FORWARD_RUN works with NONLIN_FRSURF |
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- replace cos(yc*deg2rad) by _rA in cost_mean_heat/saltflux.F, fix the |
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imbalance diagnostics for wmean_h/sflux = 0 |
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- add actual values to f_obcsn/s/w/e in ecco_cost_final.F |
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- catch the case of empty filenames in ecco_cost_init_fixed.F |
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and ecco_readparms.F |
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- fix the logic of wsalt=0.and.wsalt2=0 to wsalt=0.or.wsalt2=0 (and theta) |
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to make this statement meaningfull in ecco_cost_weights.F |
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o pkg zonal_filt: |
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- change ZONAL_FILTER S/R interface (allows to filter 2-D fields) |
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- when using rStar, filter uVel*hFacW instead of uVel |
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(tested without topography: fix a Pb of growing instability with NLFS) |
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o pkg/aim/thsice: |
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-Add capacity to read a Q-Flux to be applied in slab-mixed layer thsice_slab_ocean.F |
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(works as SST restoring) |
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o pkg/thsice: |
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-add specific parameter for salt restoring in slab mixed-layer |
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(by default equal to the temperature restoring) |
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checkpoint61v |
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o pkg/kpp: |
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-add double diffusive contributions as a hack, turned off by default |
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for now, and the code can be excluded with a CPP-flag |
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EXCLUDE_KPP_DOUBLEDIFF just as EXCLUDE_KPP_SHEAR_MIX |
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-add a verification experiments to "vermix" to test this code |
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o pkg/mom_common: |
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Move computation of length scales to mom_init_fixed.F (avoid recomputation |
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at each time-steps*levels). |
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o pkg/layers: |
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Created a new package for computing volume fluxes in temperature or |
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[not yet implemented] density layers, e.g. for calculating residual |
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overturning circulations. |
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o pkg/diagnostics: |
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implement a RS type version for the set of DIAGNOSTICS-FILL subroutines |
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o fix few RS/RL type mismatch (check with ifort 11.1 "-warn all" option) |
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o pkg/mdsio (& pkg/rw): rework high level S/R interface: |
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To avoid mixing type (RS/RL) of input/output array argument, |
| 133 |
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replace single mixed-type array with a pair from each type (RS/RL). |
| 134 |
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o setting pickupSuff force to start from a pickup (even if nIter0=0): this |
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is now implemented for all pkgs (previously only done for the main pickup) |
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checkpoint61u |
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o pkg/obcs: |
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- change OB?eta from _RS to _RL and put them into a separate commen block |
| 140 |
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- add code to read OB?eta from a file via obcs_prescribe_read: the code |
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compiles and does not destroy any other experiments, the data is read |
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properly, but the code is not tested in actual applications |
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o ini_mnc_vars.F: if available (ALLOW_CAL), use startTime_1 and 2 to |
| 144 |
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create a meaningful unit attribute for the time coordinate variable |
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o pkg/ebm: add plenty of missing "_d 0" ; |
o pkg/ebm: add plenty of missing "_d 0" ; |
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update results of experiment global_ocean_ebm (fwd + adjoint tests) |
update results of experiment global_ocean_ebm (fwd + adjoint tests) |
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Notes: several pieces of code only works for (very) specific set up |
Notes: several pieces of code only works for (very) specific set up |
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