| 3 |
Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
| 4 |
============================== |
============================== |
| 5 |
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| 6 |
release1_p13_pre |
checkpoint47f_post |
| 7 |
o Added net flux to downward flux conversion to pkg/exf/exf_getffields.F |
Merging from release1_p10: |
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o Added SEAICE_initialHEFF to pkg/seaice |
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o the_model_main.F: SEAICE_WRITE_PICKUP must precede WRITE_CHECKPOINT |
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o Updated pkg/seaice and pkg/exf with adjoint modifications from icebear4 |
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release1_p12 |
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o Added missing /* */ to CPP comments in pkg/seaice, pkg/exf, |
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kpp_transport_t.F, forward_step.F, and the_main_loop.F |
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o pkg/seaice: |
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- adjoint-friendly modifications |
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- added a SEAICE_WRITE_PICKUP at end of the_model_main.F |
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release1_p12_pre |
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o Updated useSingleCpuIO option in mdsio_writefield.F to |
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work with multi-field files, e.g., for single-file pickup. |
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o pkg/seaice: |
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- bug fix in growth.F: QNET for no shortwave case |
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- added HeffFile for specifying initial sea-ice thickness |
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- changed SEAICE_EXTERNAL_FLUXES wind stress implementation |
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release1_p11 |
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o Modifications for using pkg/exf with pkg/seaice |
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- improved description of the various forcing configurations |
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- added basic radiation bulk formulae to pkg/exf |
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- units/sign fix for evap computation in exf_getffields.F |
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- updated verification/global_with_exf/results/output.txt |
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o Added pkg/sbo for computing IERS Special Bureau for the Oceans |
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(SBO) core products, including oceanic mass, center-of-mass, |
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angular, and bottom pressure (see pkg/sbo/README.sbo). |
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o Lower bound for viscosity/diffusivity in pkg/kpp/kpp_routines.F |
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to avoid negative values in shallow regions. |
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- updated verification/natl_box/results/output.txt |
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- updated verification/lab_sea/results/output.txt |
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o MPI gather, scatter: eesupp/src/gather_2d.F and scatter_2d.F |
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o Added useSingleCpuIO option (see PARAMS.h). |
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release1_p10 |
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| 8 |
o modifications for using pkg/exf with pkg/seaice |
o modifications for using pkg/exf with pkg/seaice |
| 9 |
- pkg/seaice CPP options SEAICE_EXTERNAL_FORCING |
- pkg/seaice CPP options SEAICE_EXTERNAL_FORCING |
| 10 |
and SEAICE_EXTERNAL_FLUXES |
and SEAICE_EXTERNAL_FLUXES |
| 15 |
- verification/lab_sea default experiment now uses |
- verification/lab_sea default experiment now uses |
| 16 |
pkg/gmredi, pkg/kpp, pkg/seaice, and pkg/exf |
pkg/gmredi, pkg/kpp, pkg/seaice, and pkg/exf |
| 17 |
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| 18 |
release1_p9 |
checkpoint47e_post |
| 19 |
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o created a tag prior to creating a branch |
| 20 |
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| 21 |
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checkpoint47d_post |
| 22 |
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o fixed bug in the oceanic pressure coordinates code: vertical viscosity |
| 23 |
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at the bottom boundary had an erroneous half slip boundary condition |
| 24 |
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o added bottom drag and no slip boundary condition capabilities to |
| 25 |
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oceanic pressure coordinates code |
| 26 |
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o added new verification experiment global_ocean_pressure, this experiment is |
| 27 |
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also described in the tutorial section of the manual |
| 28 |
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checkpoint47d_pre |
| 29 |
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| 30 |
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checkpoint47c_post |
| 31 |
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o Added a verification experiment for a global cubed-sphere ocean run |
| 32 |
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- verification/global_ocean.cubed32x32x30 |
| 33 |
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- uses pkg/therm_seaice and pkg/bulk_forcing |
| 34 |
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| 35 |
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o allow to run AIM physics with SPEEDY input files (from Franco Molteni) |
| 36 |
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o allow a more accurate definition of Ro_Surf (selectFindRoSurf=1) |
| 37 |
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when using P-coordinate; only implemented for atmospheric config. |
| 38 |
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o OCEANICP & realFreshWater: include P-E direct effect on wVel ; |
| 39 |
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NOTES: requires option NONLIN_FRSURF to be "#define". |
| 40 |
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o update advect_xz/results/output.txt (left from checkpoint44g_post) |
| 41 |
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| 42 |
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checkpoint47b_post |
| 43 |
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Merging from release1_p9: |
| 44 |
o pkg/seaice |
o pkg/seaice |
| 45 |
- removed GOTO's and added taf directives |
- removed GOTO's and added taf directives |
| 46 |
- double precision constants to reduce the g77 (Linux) |
- double precision constants to reduce the g77 (Linux) |
| 56 |
- added missing matlab routines |
- added missing matlab routines |
| 57 |
- added test of thermodynamics parallelization |
- added test of thermodynamics parallelization |
| 58 |
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| 59 |
release1_p8 |
checkpoint47a_post |
| 60 |
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o new pkg: aim_v23 |
| 61 |
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= F. Molteni atmos.physics (SPEEDY, ver23) adapted to MITgcm. |
| 62 |
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for now, keep the same surface forcing as before. |
| 63 |
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- Part-Cell implemented into AIM; check that Heat & Water are conserved |
| 64 |
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- aim.5l_cs: use new aim pkg (run 10yr & get better results than before) |
| 65 |
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- aim.5l_LatLon & aim.5l_Equatorial_Channel are still using old aim pkg |
| 66 |
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o add diagnostic of surface correction term in monitor output |
| 67 |
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| 68 |
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o bulk_force and therm_seaice |
| 69 |
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- Two packages: bulk_force (Bulk forcing) |
| 70 |
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and therm_seaice (thermodynamic_seaice) - adopted from LANL CICE.v2.0.2 |
| 71 |
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- Earlier integration from Stephaine Dutkiewicz |
| 72 |
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and Patrick Heimbach. |
| 73 |
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- Two ifdef statements for compile time, |
| 74 |
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ALLOW_THERM_SEAICE and ALLOW_BULK_FORCE |
| 75 |
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| 76 |
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checkpoint47 |
| 77 |
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differentiable version of checkpoint46n_post |
| 78 |
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o bug fix in quasihydrostaticterms |
| 79 |
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o * "clean" adjoint code (in terms of extensive recomputations) |
| 80 |
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can now be obtained for all GMREDI options (i.e. for |
| 81 |
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- GM_VISBECK_VARIABLE_K |
| 82 |
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- GM_NON_UNITY_DIAGONAL |
| 83 |
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- GM_EXTRA_DIAGONAL |
| 84 |
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- GM_BOLUS_ADVEC ) |
| 85 |
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* However, wrong gradient check problem remains unsolved. |
| 86 |
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* New CPP options have been introduced for different |
| 87 |
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tapering schemes |
| 88 |
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o external_fields_load now part of differentiation list |
| 89 |
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o pressure needs multiple storing; |
| 90 |
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would be nice to have store_pressure at beginning or |
| 91 |
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end of forward_step, e.g. by having phiHyd global (5-dim.) |
| 92 |
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(NB: pressure is needed for certain cases in find_rho, |
| 93 |
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which is also invoked through convective_adjustment). |
| 94 |
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o recomputations in find_rho for cases |
| 95 |
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'JMD95'/'UNESCO' or 'MDJWF' are OK. |
| 96 |
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o #define ATMOSPHERIC_LOADING should be differentiable |
| 97 |
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o ini_forcing shifted to begining of initialise_varia |
| 98 |
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o Incorporating QNVS line search routines into MITgcm |
| 99 |
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(this is separate code, and therefore not under pkg) |
| 100 |
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lsopt/, optim/ |
| 101 |
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o Updated verification/carbon/ |
| 102 |
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- #define GM_VISBECK_VARIABLE_K |
| 103 |
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- GM_taper_scheme = 'ldd97' |
| 104 |
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| 105 |
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checkpoint46n_post |
| 106 |
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Merging from release1_p8: |
| 107 |
o verification/natl_box: |
o verification/natl_box: |
| 108 |
updating new external_fields_load routine |
updating new external_fields_load routine |
| 109 |
o New package: pkg/seaice |
o New package: pkg/seaice |
| 130 |
g d e n d n x n . n x n . n x n . n x n . |
g d e n d n x n . n x n . n x n . n x n . |
| 131 |
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| 132 |
Y Y Y Y 5 5 7 7 7 8 10 9 6 6 6 6 7 5 7 5 7 FAIL lab_sea |
Y Y Y Y 5 5 7 7 7 8 10 9 6 6 6 6 7 5 7 5 7 FAIL lab_sea |
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release1_p7 |
|
| 133 |
o GAD: |
o GAD: |
| 134 |
- generated new common blocks to account for call of |
- generated new common blocks to account for call of |
| 135 |
same gad routines with differing traceridentities |
same gad routines with differing traceridentities |
| 156 |
the exf (and cal) package instead of the |
the exf (and cal) package instead of the |
| 157 |
external_fields_load routine (cf README file). |
external_fields_load routine (cf README file). |
| 158 |
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| 159 |
release1_p6 |
checkpoint46m_post |
| 160 |
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o modified testscript to return -- when there are no lines of "%MON" output |
| 161 |
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o added new flag "quasiHydrostatic" for QH mode |
| 162 |
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and new routine quasihydrostaticterms() |
| 163 |
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o added 2*Omega*Cos(phi)*W to u equations (non-hydrostatic Coriolis term) |
| 164 |
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New routine: mom_u_coriolis_nh() |
| 165 |
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o fixed sign of non-hydrostatic metric terms in u and v equations. |
| 166 |
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Depend on correct sign of gravitySign. |
| 167 |
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o added work.pc* to .cvsignore in aim directories using ifc |
| 168 |
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o introduced flag for controllin non-hydrostatic metric terms |
| 169 |
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o removed gravitySign from PARM04 |
| 170 |
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o switched to g77/ifc from pgf77 in aim experiments |
| 171 |
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| 172 |
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checkpoint46l_post |
| 173 |
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o made convective adjustment work with pressure coordinates: |
| 174 |
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- changed the direction of k-loop in convective_adjustment.F for the |
| 175 |
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case of pressure coordinates (OCEANICP,ATMOSPHERIC buoyancyRelation) |
| 176 |
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- adjusted the reference pressure k-index in convective_adjustment.F |
| 177 |
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- adjusted the convection condition in convect.F (in analogy to |
| 178 |
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calc_ivdc.F) |
| 179 |
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- convective_adjustment no longer computes anything on the halos |
| 180 |
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- removed the warnings about negative salinity from find_rho.F and |
| 181 |
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find_alpha.F; instead the new routine look_for_neg_salinity, called |
| 182 |
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at the beginning of find_rho, find_alpha, and find_beta, does a |
| 183 |
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check of the entire slice, if CPP-option |
| 184 |
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CHECK_SALINITY_FOR_NEGATIVE_VALUES is defined |
| 185 |
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checkpoint46l_pre |
| 186 |
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| 187 |
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checkpoint46k_post |
| 188 |
o fixed the verification/global_ocean.90x40x15 experiment: |
o fixed the verification/global_ocean.90x40x15 experiment: |
| 189 |
- new bathymetry (the world according to A., JMC, and M.) |
- new bathymetry (the world according to A., JMC, and M.) |
| 190 |
- new initial fields and forcing fields (*.bin files) |
- new initial fields and forcing fields (*.bin files) |
| 191 |
- new POLY3.COEFFS (for the next release one should switch to a full |
- new POLY3.COEFFS (for the next release one should switch to a full |
| 192 |
equation of state) |
equation of state: JMD95P or MDJWF) |
| 193 |
- fixed several errors and redundancies in the data file |
- fixed several errors and redundancies in the data file |
| 194 |
- experiment uses looped cells |
- experiment uses looped cells |
| 195 |
- added matlab directory with diagnostic scripts for plotting of output |
- added matlab directory with diagnostic scripts for plotting of output |
| 196 |
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|
| 197 |
release1_p5 |
o S/R aim_initialise.F replace S/R aim_init from file aim_do_inphys.F: |
| 198 |
o import recent fix from MAIN branch: |
- read AIM physics parameters from a file (data.aimphys) |
| 199 |
- use recip_dx*,recip_dy* instead of /dx*,/dy* in orlanski_E,W,N,S |
- set defaults values = F.Molteni paper (Clim.Dyn., 2002) |
| 200 |
- change phiMin in exp1 (to agree with documentation) |
|
| 201 |
from checkpoint45 to checkpoint45a_post: |
checkpoint46j_post |
| 202 |
- specific exchange for X-slice domain (case Ny=1) |
o split calc_exact_eta in 2 S/R : integr_continuity & update_etaH |
| 203 |
- argument futureIter of S/R obcs_calc missing in |
o move wVel computation at the end of the time step, in S/R integr_continuity |
| 204 |
exp4 & internal_wave /code |
o create specific S/R to exchange T,S before DYNAMICS (for stagger time step) |
| 205 |
- solve_for_pressure : set cg2d_x to zero where OBCS are applied |
o update timeave pkg for wVel diagnostic. |
| 206 |
from checkpoint44f_post to checkpoint44g_post: |
checkpoint46j_pre |
| 207 |
- fix surface correction term in multiDimAdvection |
|
| 208 |
(affects plume_on_slope results |
checkpoint46i_post |
| 209 |
o bug fix in packages_readparms (missing ALLOW_CALENDAR) |
o Clean up AIM package (and keep the results unchanged): |
| 210 |
o bug fix in CG2D.h (correct array size for LETS_MAKE_JAM |
include CPP_OPTION and use IMPLICT NONE in all routines ; |
| 211 |
o Adjoint-related bug fixes in kpp: |
declare all the variables _RL ; use _d 0 for all numerical constants. |
| 212 |
- kpp_calc: sore of kpphbl avoids recomputation/call to S/R kppmix |
use ifdef ALLOW_AIM everywhere. And now AIM can be used with g77 ! |
| 213 |
- kpp_routines: store of Rib avoids partial recomputation bug of TAF. |
|
| 214 |
o added Eliassen-Palm flux hooks (dynamics,ini_fields) |
checkpoint46h_post |
| 215 |
o removed unused TAF keys iikey, idkey (dynamics,thermodynamics) |
o cleaned up the use of rhoNil and rhoConst. |
| 216 |
o flow directives: |
- rhoNil should only appear in the LINEAR equation of state, everywhere |
| 217 |
- new for S/R do_the_model_io |
else rhoNil is replaced by rhoConst, e.g. find_rho computes rho-rhoConst |
| 218 |
- enhanced for S/R checkpoint |
and the dynamical equations are all divided by rhoConst |
| 219 |
o added Eliassen Palm flux controls to gradient check package |
o introduced new parameter rhoConstFresh, a reference density of fresh |
| 220 |
|
water, to remove the fresh water flux's dependence on rhoNil. The default |
| 221 |
|
value is 999.8 kg/m^3 |
| 222 |
|
o cleanup up external_forcing.F and external_forcing_surf.F |
| 223 |
|
- can now be used by both OCEANIC and OCEANICP |
| 224 |
|
checkpoint46h_pre |
| 225 |
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|
| 226 |
|
Added code to convert surface volume flux (fresh water) into |
| 227 |
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a mass flux when using P coordinates in the ocean (OCEANICP). |
| 228 |
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Note: It assumes you have set rho0=rhoConst=density of fresh water. |
| 229 |
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|
| 230 |
|
checkpoint46g_post |
| 231 |
|
o Include a new diagnostic variable phiHydLow for the ocean model |
| 232 |
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- in z-coordinates, it is the bottom pressure anomaly |
| 233 |
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- in p-coordinates, it is the sea surface elevation |
| 234 |
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- in both cases, these variable have global drift, reflecting the mass |
| 235 |
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drift in z-coordinates and the volume drift in p-coordinates |
| 236 |
|
- included time averaging for phiHydLow, be aware of the drift! |
| 237 |
|
o depth-dependent computation of Bo_surf for pressure coordinates |
| 238 |
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in the ocean (buoyancyRelation='OCEANICP') |
| 239 |
|
- requires a new routine (FIND_RHO_SCALAR) to compute density with only |
| 240 |
|
Theta, Salinity, and Pressure in the parameter list. This routine is |
| 241 |
|
presently contained in find_rho.F. This routine does not give the |
| 242 |
|
correct density for 'POLY3', which would be a z-dependent reference |
| 243 |
|
density. |
| 244 |
|
o cleaned up find_rho |
| 245 |
|
- removed obsolete 'eqn' from the parameter list. |
| 246 |
|
o added two new verification experiments: gop and goz |
| 247 |
|
(4x4 degree global ocean, 15 layers in pressure and height coordinates) |
| 248 |
|
checkpoint46g_pre |
| 249 |
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|
| 250 |
|
checkpoint46f_post |
| 251 |
|
o Enable tangent linear (forward mode) gradient checks: |
| 252 |
|
- extended active file handling to g_... files |
| 253 |
|
- added TANGENT_SIMULATION to theSimulationMode |
| 254 |
|
- extended grdchk package accordingly |
| 255 |
|
o added tangent linear setup in verification/carbon/code_ftl |
| 256 |
|
o added adjoint setup in verification/front_relax/code_ad |
| 257 |
|
|
| 258 |
|
checkpoint46e_post |
| 259 |
|
o Added new equation of state -> MDJWF |
| 260 |
|
- EOS of McDougall et al., 2002, JAOT, submitted |
| 261 |
|
- caveat: the equation of state is only valid for a smaller (more |
| 262 |
|
realistic?) range of values than JMD95P/Z and UNESCO |
| 263 |
|
- added masks to the calculation of pressure in store_pressure |
| 264 |
|
- added more check values for density in check_eos (ini_eos.F), some of |
| 265 |
|
the old check values are out of the range of the MDJWF-eos, so don't |
| 266 |
|
expect perfect matches for those |
| 267 |
|
checkpoint46e_pre |
| 268 |
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|
| 269 |
|
checkpoint46d_post |
| 270 |
|
o fixed store_pressure to work with both buoyancy relation = 'OCEANIC' and |
| 271 |
|
'OCEANICP', also initialised field pressure correctly in ini_eos in the |
| 272 |
|
case of pressure coordinates. eosType='JMD95Z' in |
| 273 |
|
combination with buoyancyRelation='OCEANICP' now causes an error. |
| 274 |
|
o Changed p = pressure(i,j,k,bi,bj) to p = pressure(i,j,kRef,bi,bj) |
| 275 |
|
in find_alpha/beta. |
| 276 |
|
checkpoint46d_pre |
| 277 |
|
|
| 278 |
|
o Changed p = pressure(i,j,k,bi,bj) to p = pressure(i,j,kRef,bi,bj) |
| 279 |
|
so that JMD95Z and JMD95P give approptiate static stability in find_rho. |
| 280 |
|
|
| 281 |
|
checkpoint46c_post |
| 282 |
|
o Changes necessary for ocean in p-coordinates |
| 283 |
|
- Added new buoyancy relation = 'OCEANICP' |
| 284 |
|
- Added new parameters = gravitySign (this used to be contained inside |
| 285 |
|
the factor dRdZ which I added when we first switched to R coordinates). |
| 286 |
|
X GM/Redi is not compatible (yet) |
| 287 |
|
X bottom drag and no-slip need to be debugged. |
| 288 |
|
checkpoint46c_pre |
| 289 |
|
|
| 290 |
|
checkpoint46b_post |
| 291 |
|
o Added new equation of state -> JMD95Z and JMD95P |
| 292 |
|
- EOS of Jackett and McDougall, 1995, JAOT |
| 293 |
|
- moved all EOS parameters into EOS.h |
| 294 |
|
- new routines ini_eos.F, store_pressure.F |
| 295 |
|
o Added UNESCO EOS, but not recommended because it requires |
| 296 |
|
in-situ temperature (see JMD95) |
| 297 |
|
o Modified formatting for knudsen2.f in utils/knudsen2 and added |
| 298 |
|
unesco.f to be used with POLY3 |
| 299 |
|
checkpoint46b_pre |
| 300 |
|
|
| 301 |
|
checkpoint46a_post |
| 302 |
|
o Added (atmospheric) pressure loading |
| 303 |
|
- new field in FFIELDS.h, etc... |
| 304 |
|
- new cpp flag ATMOSPHERIC_LOADING |
| 305 |
|
o Changed hFacC to _hFacC in calc_phi_hyd.F |
| 306 |
|
o Added SHORTWAVE_HEATING to some files for consistency |
| 307 |
|
checkpoint46a_pre |
| 308 |
|
|
| 309 |
|
checkpoint46 |
| 310 |
|
further merges from release1_p5 |
| 311 |
o new ctrl package |
o new ctrl package |
| 312 |
- adopted from ECCO environment to enable optimization |
- adopted from ECCO environment to enable optimization |
| 313 |
- added Eliassen Palm fluxes to controls |
- added Eliassen Palm fluxes to controls |
| 314 |
- adjusted global_ocean.90x40x15/ and carbon/ accordingly |
o added Eliassen Palm flux controls to gradient check package |
| 315 |
|
o cost package |
| 316 |
|
- Compatible with new ctrl package |
| 317 |
|
- added Eliassen Palm cost hooks |
| 318 |
|
- modif's of existing cost functions |
| 319 |
|
o Adjoint-related bug fixes in kpp: |
| 320 |
|
- kpp_calc: sore of kpphbl avoids recomputation/call to S/R kppmix |
| 321 |
|
- kpp_routines: store of Rib avoids partial recomputation bug of TAF. |
| 322 |
|
o autodiff package |
| 323 |
|
- flow directives: |
| 324 |
|
+ new for S/R do_the_model_io |
| 325 |
|
+ enhanced for S/R checkpoint |
| 326 |
|
+ new gmredi.flow |
| 327 |
|
- Introduced CPP option ALLOW_AUTODIFF_MONITOR to |
| 328 |
|
disable adcommon.h/g_common.h by default. |
| 329 |
|
- fixed problem for adjoint of global_max |
| 330 |
|
o modified verification/carbon/ |
| 331 |
|
o New setup for adjoint of global_ocean |
| 332 |
|
o added hooks for Eliassen Palm fluxes (dynamics.F, ini_fields.F) |
| 333 |
|
o cleaned TAF keys iikey, idkey (dynamics.F, thermodynamics.F) |
| 334 |
|
o incorporated hooks for sponge layer code (external_forcing.F) |
| 335 |
|
|
| 336 |
|
checkpoint45d_post |
| 337 |
|
o import 2 fixes from release1_p5 (CG2D.h & packages_readparms.F) |
| 338 |
|
o use recip_dx*,recip_dy* instead of /dx*,/dy* in orlanski_E,W,N,S |
| 339 |
|
(affects plume_on_slope "cg2d" output) |
| 340 |
|
o add new parameter deltaTfreesurf for free-surface time stepping |
| 341 |
|
o exchange gT,gS when using staggerTimeStep & GM & Oly<4 |
| 342 |
|
o NONLIN_FRSURF: rescale gNm1 to get a better conservation with A-B |
| 343 |
|
o change phiMin in exp1 (to agree with documentation) |
| 344 |
|
o add new flags: |
| 345 |
|
- T,S forcing inside/outside Adams-Bashforth |
| 346 |
|
- turn off temp,salt advection and/or forcing |
| 347 |
|
- for each tracer, define internal flag for multiDimAdvection & A-B |
| 348 |
|
o monitor: change definition of KE to check conservation of Energy |
| 349 |
|
|
| 350 |
release1_p4 |
checkpoint45c_post |
| 351 |
o Removed f90 comments ("!") |
o Removed f90 comments ("!") |
| 352 |
o Modified initialisations to enable exf package for MITgcm |
o Modified initialisations to enable exf package for MITgcm |
| 353 |
(without invoking ECCO_PACKAGE). |
(without invoking ECCO_PACKAGE). |
| 355 |
- enable centered differences |
- enable centered differences |
| 356 |
- modified format of standard output |
- modified format of standard output |
| 357 |
|
|
| 358 |
release1_p3 |
checkpoint45b_post |
| 359 |
o added tangent linear setup to verification/carbon/ |
o cleaned exchange calls in cg2d |
| 360 |
o added adjoint sensitivity setup to verification/global_ocean... |
o Included CPP option ALLOW_AUTODIFF_MONITOR in forward_step |
| 361 |
o moved packages_init_variables before convective_adjustment |
o included CPP option SINGLE_LAYER_MODE in thermodynamics |
| 362 |
o output of verif. which use GMRedi brought up-to-date with |
to configure barotropic setup (Martin Losch) |
| 363 |
MAIN trunk (those were re-created after changes in GMRedi) |
o moved some initialisations within bi,bj loop in dynamics |
| 364 |
o included CPP option SINGLE_LAYER_MODE |
(TAF flow dependency) |
| 365 |
to configure barotropic setup (Martin Losch). |
o in initialise_varia, moved call packages_init_variables |
| 366 |
o Removed auxiliary variable in impldiff |
before convective_adjustment_init |
| 367 |
(caused numerical differences with MAIN trunk routine). |
(corresponding adjustment of TAF tape initialisation). |
| 368 |
o Introduced CPP option ALLOW_AUTODIFF_MONITOR to |
o in calc_diffusivity/calc_viscosity extended domain to full overlap. |
| 369 |
disable adcommon.h/g_common.h by default. |
|
| 370 |
o Cleaned exchange calls in cg2d. |
checkpoint45a_post |
| 371 |
|
o compute Rho over the whole domain (extend iMin,jMin indices) |
| 372 |
release1_p2 |
o specific exchange for X-slice domain (case Ny=1) |
| 373 |
o fixed array boundary problem for adjoint |
o argument futureIter of S/R obcs_calc missing in exp4 & internal_wave /code |
| 374 |
(related to partial recomputation within subroutine |
o solve_for_pressure : set cg2d_x to zero where OBCS are applied |
| 375 |
related to dynamics -> calc_viscosity -> mom_... |
|
| 376 |
o fixed recomputation in thermodynamics |
checkpoint44h_post = checkpoint45 |
| 377 |
o prepare (but not complete) recomputation problem in impldiff |
o Fix to restore differentiability: |
| 378 |
o fixed problem for adjoint of global_max |
place at which packages_init_variables is called in |
| 379 |
o switched off sponge layer code in external_forcing |
initialise_varia is crucial for reverse control flow. |
| 380 |
|
o modifications in GMRedi to enable stable adjoint |
| 381 |
release1_p1 |
(corresponding modif's in thermodynamics, dynamics) |
| 382 |
o merged necessary patches: |
o added missing hook for sponge layer code in external_forcing |
| 383 |
- AD-related changes for GMRedi |
o modified test cost functions |
| 384 |
- fixes i KPP (delZ -> drF) |
o storing in gad_advection (plus removal of write(0,*)! |
| 385 |
- hook to OBCS songe layer code in external_forcing |
o missing headers TR1.h added in convective_adjustment routines |
| 386 |
- errorMessageUnit non-zero in eeboot.F |
o errorMessageUnit set non-equal zero in eeboot |
| 387 |
- modified test cost function and carbon verif. |
(conflict on some platforms, e.g. IBM SP3) |
| 388 |
|
o modified carbon verif. |
| 389 |
release1_chkpt44d_post = chkpt44d_post |
|
| 390 |
|
checkpoint44h_pre |
| 391 |
|
o vertical grid option: allow to put the Interface at the middle between |
| 392 |
|
2 cell-centers ; replace delZ in pkg/kpp by drF. |
| 393 |
|
o GM Advective form: Tracers are advected using the residual transport (= |
| 394 |
|
Euler+GM-bolus); set param GM_AdvSeparate=T to return to previous form. |
| 395 |
|
|
| 396 |
|
checkpoint44g_post |
| 397 |
|
o fix surface correction term in multiDimAdvection (affects plume_on_slope |
| 398 |
|
results) ; ifdef missing in thermodynamics.F |
| 399 |
|
|
| 400 |
|
checkpoint44f_pre,checkpoint44f_post |
| 401 |
|
o added PTRACERS package |
| 402 |
|
This allows an arbitrary number of passive tracers to be integrated |
| 403 |
|
forward simultaneously with the dynamicaly model. |
| 404 |
|
+ Implemented so far: |
| 405 |
|
- basic forward algorithm (time-stepping, advection, diffusion, convection) |
| 406 |
|
- I/O and checkpointing |
| 407 |
|
- GM/Redi *but* using the GM/Redi coefficient of Salt |
| 408 |
|
+ Not implemented so far: |
| 409 |
|
- KPP |
| 410 |
|
- OBCS |
| 411 |
|
+ No specific example supplied (yet) but global_ocean.90x40x15 has the |
| 412 |
|
necessary data.ptracer file. Simply use -enable=ptracers and uncomment |
| 413 |
|
line in data.pkg. |
| 414 |
|
+ This package is disabled by default since it increases storage. |
| 415 |
|
|
| 416 |
|
|
| 417 |
|
o testscript: added -cleanup option |
| 418 |
|
o Shap_filt: a) new shap_filt S/R to use no-slip BC with S2 filter |
| 419 |
|
b) enable to filter 2D fields. |
| 420 |
|
|
| 421 |
|
checkpoint44e_pre,post |
| 422 |
|
o re-wrote convective adjustment to use pre-calculated weights |
| 423 |
|
Affects: model/src/convective_adjustment.F, convective_adjustment_ini.F |
| 424 |
|
Adds: model/src/convective_weights.F, convectively_mixtracer.F |
| 425 |
|
Original calls to convect() still in place. |
| 426 |
|
|
| 427 |
chkpt44d_pre,post |
chkpt44d_pre,post |
| 428 |
o added missing EXCLUDE_MONITOR flags |
o added missing EXCLUDE_MONITOR flags |
| 433 |
plus resetting for case SunOS |
plus resetting for case SunOS |
| 434 |
o added timer_stats.c routine for IBM SP3 |
o added timer_stats.c routine for IBM SP3 |
| 435 |
o removed variables in dynamics |
o removed variables in dynamics |
| 436 |
|
!!! I forgot to create tag chkpt44d_pre !!! |
| 437 |
|
!!! But chkpt44d_pre = chkpt44c_post !!! |
| 438 |
|
|
| 439 |
o real fresh water flux implemented with non-linear free-surface. |
o real fresh water flux implemented with non-linear free-surface. |
| 440 |
|
|
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