4 |
Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
5 |
============================== |
============================== |
6 |
|
|
7 |
|
o pkg/mnc: fix the coordinate variables for multi-tile curvi-linear grids |
8 |
|
that are not cubed-sphere grids |
9 |
|
o pkg/seaice: fix a bug for the rare case of SEAICE_VECTORIZE_LSR |
10 |
|
o pkg/ctrl: |
11 |
|
fix bug in ctrl_depth_ini.F (EXCH_XYZ was applied to 2-D field xx_r_low) |
12 |
|
o non-hydrostatic (calc_gw.F): |
13 |
|
fix viscA4 on CS-grid + fix diagnostics: Wm_Diss & Wm_Advec |
14 |
|
update output of exp. global_ocean.cs32x15.viscA4 |
15 |
|
o remove backward compatibility for thetaMin,phiMin |
16 |
|
(replaced by xgOrigin,ygOrigin on Jan 27, 2009) |
17 |
|
o pkg/exf: fix a serious bug in exf_set_uv.F: do a rotation of the |
18 |
|
interpolated wind field not only for curvilineargrid=.true., but also |
19 |
|
for a rotated grid (rotateGrid=.true.) |
20 |
|
o pkg/exf: add capability to bypass interpolation for runoff |
21 |
|
by setting yet another CPP-flag |
22 |
|
o eesupp/src, B-grid exchange: |
23 |
|
add simple (6 tiles, non MPI) CS exch + standard interface S/R. |
24 |
|
o autodiff |
25 |
|
new CPP option ALLOW_TAMC_SINGLEPREC_COMLEV |
26 |
|
allows to switch to single-prec common blocks; |
27 |
|
corresponding switch occurs in tamc.h, integer isbyte |
28 |
|
TAF store directivs "byte" and "kind" seem equivalent; |
29 |
|
Most tamc.h have been updated correspondingly. |
30 |
|
|
31 |
|
checkpoint61i |
32 |
|
o autodiff: |
33 |
|
fix autodiff_sore/_restore indices for obcs |
34 |
|
(spotted by I. Hoteit, M. Mazloff) |
35 |
|
o pkg/autodiff, pkg/ctrl: |
36 |
|
Add flag to reduce all tapelev I/O to single-prec. |
37 |
|
In data.ctrl set |
38 |
|
doSinglePrecTapelev = .TRUE. |
39 |
|
o model/src/ini_curvilinear_grid.F, new grid-file format without EXCH2: |
40 |
|
check in hack for SX8 compiler (for dxV, dyU); remove it afterwards. |
41 |
|
o pkg/shelfice: fix bug with SHELFICEconserve flag, prepare for |
42 |
|
real fresh water flux (not yet) |
43 |
|
o pkg/mdsio & rw: |
44 |
|
- add argument & option to S/R MDS_WRITEVEC_LOC (avoid Open/Close & write-meta) |
45 |
|
- add simple interface S/R to MDS_WRITEVEC_LOC in pkg/rw: WRITE_GLVEC_RX. |
46 |
|
o pkg/flt: |
47 |
|
- replace FLT_INIT by 3-steps standard initialization S/R: readparms, |
48 |
|
init_fixed & ini_varia. |
49 |
|
- clean-up & simplify linear interpolation S/R: |
50 |
|
move flt_bilinear.F -> flt_interp_linear.F ; add arg. myThid. |
51 |
|
- fix some indices (mainly vertical index) ; add IMPLICIT NONE. |
52 |
|
- more efficient I/O, using new options of MDS_WRITEVEC_LOC S/R. |
53 |
|
- add vert. coordinate & horiz. indices to output files. |
54 |
|
- change vertical position in initial condition, from index to depth [m]. |
55 |
|
- store horizontal (decimal) indices i,j in common block (instead of coord. x,y) |
56 |
|
(easier to get to a curvilinear grid) ; delX,delY no longer used. |
57 |
|
o pkg/ggl90: a few modifications: |
58 |
|
- fix bottom boundary condition, and interpolation of KappaE |
59 |
|
near top and bottom |
60 |
|
- use same set of viscosity/diffusivity for TKE/momnetum/tracer |
61 |
|
- add smoothing option as in Blanke and Delecluse (1993) (--> ALLOW_GGL90_SMOOTH) |
62 |
|
- add a few options for mixing-length upper limit (--> mxlMaxFlag) |
63 |
|
o rename thetaMin,phiMin -> xgOrigin,ygOrigin |
64 |
|
(maintain temporary backward compatibility, until next checkpoint) |
65 |
|
|
66 |
|
checkpoint61h |
67 |
|
o pkg/diagnostics with "periodic averaging diagnostics": |
68 |
|
fix S/R DIAGNOSTICS_COUNT ; hack diagnostics_out.F to get NetCDF output. |
69 |
|
o pkg/my82: add missing "_d 0" ; update output of exp. vermix.my82 |
70 |
|
o pkg/obcs: fix loop ranges for balancing code |
71 |
|
o pkg/flt: |
72 |
|
- improve criteria for finding which tile owns a float. |
73 |
|
- fix FLT_EXCH for case without MPI ; apply cyclic BC + fix also the MPI case. |
74 |
|
o Add well-mixed CO2 box in aim_v23 (which includes changes in pkg |
75 |
|
aim_compon_interf, ocn_compon_interf, gchem, and dic to get coupling |
76 |
|
with ocean biogeo) |
77 |
|
o pkg/flt: |
78 |
|
- do some cleaning and fix the restart ; |
79 |
|
- add output.txt in flt_example/results to get this pkg tested. |
80 |
|
o genmake2: add an EXTENDED_SRC option and flag. |
81 |
|
for now, cannot be turned on on command line (only through genmake_local) |
82 |
|
o pkg/mdsio: read/write vector: |
83 |
|
- singleCpuIO: fix RL/RS in MDSWRITEVECTOR by calling new S/R MDS_BUFFERtoRL/RS |
84 |
|
- singleCpuIO=F: fix arrType & filePrec & _BYTESWAPIO in both MDSREADVECTOR |
85 |
|
& MDSWRITEVECTOR by calling new S/R MDS_RD/WR_VEC_RL/RS. |
86 |
|
- affects gradient of test-exp "bottom_ctrl_5x5" (not due to _BYTESWAPIO) |
87 |
|
(drop to 4 digits matching for grad). But this test does not look very |
88 |
|
reliable (was already failling on eddy, fc5, at 6.digits). Update output. |
89 |
|
|
90 |
|
checkpoint61g |
91 |
|
o pkg/flt: |
92 |
|
- move FLT_CPPOPTIONS.h to FLT_OPTIONS.h (standard name) |
93 |
|
+ make OPTIONS file more standard. |
94 |
|
- rename S/R MDSREADVECTOR_FLT to FLT_MDSREADVECTOR (to mach src file name) |
95 |
|
- fix _BYTESWAPIO CPP-Flag |
96 |
|
- standard reading of file-parameter "data.flt" |
97 |
|
- fix argument list of S/R FLT_RESTART |
98 |
|
still need to fix _BYTESWAPIO in pkg/mdsio/mdsio_writevector.F |
99 |
|
o pkg/obcs: fix a CPP-flag, bug reported by Jeff Blundell |
100 |
o gather_2d.F/scatter_2d.F: suppress vectorisation on NEC SX in respond to |
o gather_2d.F/scatter_2d.F: suppress vectorisation on NEC SX in respond to |
101 |
a still unfixed compiler/optimization bug |
a still unfixed compiler/optimization bug |
102 |
|
|
2383 |
- my82 (Mellor and Yamada, 1982) level 2 turbulence closure scheme |
- my82 (Mellor and Yamada, 1982) level 2 turbulence closure scheme |
2384 |
- these scheme operate in a similar manner as KPP (without ghat, of |
- these scheme operate in a similar manner as KPP (without ghat, of |
2385 |
course), however there is only one diffusivity that is used for both |
course), however there is only one diffusivity that is used for both |
2386 |
temperature and salinity (and passive tracers)ç |
temperature and salinity (and passive tracers) |
2387 |
o add offline package |
o add offline package |
2388 |
o add "verification/dic_example" which contains a dic-gchem-ptracer setup |
o add "verification/dic_example" which contains a dic-gchem-ptracer setup |
2389 |
provided by Stephanie Dutkiewicz |
provided by Stephanie Dutkiewicz |