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$Header: /u/gcmpack/MITgcm/doc/tag-index,v 1.53.2.5 2002/05/14 20:42:45 heimbach Exp $ |
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|
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Notes on tags used in MITgcmUV |
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============================== |
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|
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next patch: |
7 |
o added tangent linear setup to verification/carbon/ |
8 |
o added adjoint sensitivity setup to verification/global_ocean... |
9 |
o moved packages_init_variables before convective_adjustment |
10 |
|
11 |
release1_p2 |
12 |
o fixed array boundary problem for adjoint |
13 |
(related to partial recomputation within subroutine |
14 |
related to dynamics -> calc_viscosity -> mom_... |
15 |
o fixed recomputation in thermodynamics |
16 |
o prepare (but not complete) recomputation problem in impldiff |
17 |
o fixed problem for adjoint of global_max |
18 |
o switched off sponge layer code in external_forcing |
19 |
|
20 |
release1_p1 |
21 |
o merged necessary patches: |
22 |
- AD-related changes for GMRedi |
23 |
- fixes i KPP (delZ -> drF) |
24 |
- hook to OBCS songe layer code in external_forcing |
25 |
- errorMessageUnit non-zero in eeboot.F |
26 |
- modified test cost function and carbon verif. |
27 |
|
28 |
release1_chkpt44d_post = chkpt44d_post |
29 |
|
30 |
chkpt44d_pre,post |
31 |
o added missing EXCLUDE_MONITOR flags |
32 |
o changed "e" to "_d" in gmredi_slope_limit, gmredi_slope_psi |
33 |
(incompatible typ in MIN/MAX expressions caused problems |
34 |
on IBM SP3) |
35 |
o in genmake added variable MAKEDEPEND |
36 |
plus resetting for case SunOS |
37 |
o added timer_stats.c routine for IBM SP3 |
38 |
o removed variables in dynamics |
39 |
|
40 |
o real fresh water flux implemented with non-linear free-surface. |
41 |
|
42 |
chkpt44c_pre,post |
43 |
o few fix (mask in shap_s2, EmPmR in external_field_load, |
44 |
USE_NATURAL_BCS in solve_for_P); |
45 |
o add arguments myIter & myTime to S/R obcs_calc & solve_for_P |
46 |
|
47 |
checkpoint44b_pre/_post |
48 |
o merge of relevant stuff from the ecco-branch: |
49 |
- genmake: removed $S64 overwrite for case SunOS |
50 |
- pkg/exf: update and corrections for field swapping and obcs |
51 |
- pkg/ecco: parameter lists for the_model_main, the_main_loop |
52 |
harmonized between ECCO and MITgcm |
53 |
- pkg/autodiff: added flow directives for obcs, mdsio_gl_slice |
54 |
updated checkpointing_lev... lists for obcs |
55 |
- model/src: minor changes in forward_step, plot_field |
56 |
added directive for divided adjoint in the_main_loop |
57 |
- pkg/mdsio: added mdsio_gl_slice |
58 |
|
59 |
o check parameters & config (chkpt44a_pre,post) |
60 |
o OBC and NonLin_FrSurf. |
61 |
|
62 |
checkpoint44 |
63 |
o fix bug in mom_vi_del2uv |
64 |
o select when filters are applied ; add options to zonal_filter (data.zonfilt) |
65 |
o gmredi: fix Pb in the adiabatic form ; add options (.e.g. Bolus advection) |
66 |
o update AIM experiments (NCEP input files) |
67 |
o improve and extend diagnostics (Monitor, TimeAve with NonLin-FrSurf) |
68 |
o added some stuff for AD |
69 |
|
70 |
checkpoint43 |
71 |
o added two new advection tests |
72 |
o added global 4x4 degree ocean test |
73 |
o added test of H&S94 with free surface on cube |
74 |
o some final mods for gradient check, adjoint,... |
75 |
|
76 |
checkpoint42 |
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Fixed AD-related problems: |
78 |
o Store directives up-to-date with re-arranged Adams-Bashforth |
79 |
(mainly thermodynamics.F) |
80 |
o New store directives for multi-dim. advection schemes |
81 |
* new CPP flag ALLOW_MULTI_DIM_ADVECTION |
82 |
* new common block and key passkey |
83 |
(mainly gad_advection.F) |
84 |
o Modified store directives for split of dynamics/thermodynamics |
85 |
for the case ALLOW_KPP |
86 |
o Cleaned argument list for timestep_tracer.F |
87 |
|
88 |
checkpoint41 |
89 |
o re-formatted/added comments in prologues of key subroutines |
90 |
to work with protex |
91 |
|
92 |
checkpoint40 |
93 |
o moved calc_gs, calc_gt and calc_tr1 back to model/src |
94 |
o added FLT (floats) package from Arne along with demo. experiment |
95 |
o re-arranged Adams-Bashforth scheme for tracers to allow easier |
96 |
implementation of forward-in-time forcing terms |
97 |
o more mods for non-linear free-surface including new variable |
98 |
o modified multi-dim method to work on cube |
99 |
o bug fix in KPP (from DM) |
100 |
|
101 |
checkpoint40pre9 |
102 |
o added DST advection schemes |
103 |
o fix MPI bug on SGI's |
104 |
o modifications for non-linear free-surface |
105 |
o fixed conditionals for fixed flow/passive tracer only mode |
106 |
o added tension/strain form of stress tensor |
107 |
o changes to commenting of arguments for TAF/TAMC |
108 |
o added/updated many matlab scripts |
109 |
o added multi-dimensional advection method for tracers |
110 |
|
111 |
checkpoint40pre8 |
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o new package rw/ |
113 |
Added method for dumping intermediate local arrays: |
114 |
mdsio_writetile - same as mdsio_writefield except works from inside |
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bi,bj loop |
116 |
mdsio_writelocal - same as mdsio_writetile except works for local |
117 |
arrays |
118 |
write_local_r? - higher-level wrapper for mdsio_writelocal |
119 |
Controlled by diagFreq. Defaults to zero (ie. no dumps) |
120 |
Example given at end of mom_vecinv.F that dumps some local arrays. |
121 |
o replaced calc_mom_rhs.F by mom_fluxform.F/mom_vecinc.F to |
122 |
control flux-form versus vector invariant code. |
123 |
Switch is runtime flag vectorInvariantMomentum (defaults to false) |
124 |
or genmake -DISABLE ... |
125 |
o TAMC-related update to cope with mom_fluxform.F/mom_vecinc.F |
126 |
(additional storing is now needed for case vecinv; |
127 |
currently nothing implemented to switch this storing off |
128 |
in case fluxform is used since no CPP flag available). |
129 |
|
130 |
checkpoint40pre7 |
131 |
o bug fix in dynamics.F |
132 |
calc_viscosity called before k=1,Nr loop. |
133 |
o added some #ifdef's ALLOW_PASSIVE_TRACER |
134 |
o cleaned initialisations in ctrl_map_ini |
135 |
related to TAF |
136 |
|
137 |
checkpoint40pre6 |
138 |
o split dynamics into thermodynamics & dynamics |
139 |
o corresponding split of calc_diffusivity into |
140 |
calc_diffusivity, calc_viscosity |
141 |
(kpp_calc_diff, kpp_calc_visc). |
142 |
o Added diffkr, kapgm to control variables |
143 |
o bug fix in gmredi_slope_limit for ldd97 |
144 |
|
145 |
checkpoint40pre5 |
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o proper initialization of Adams-Bashforth time stepping |
147 |
+ uses forward step for very first step of model (iter=0) |
148 |
o re-generated *all* output since almost all output is modified by this |
149 |
change (sorry but we've been putting this one off for about 2 years) |
150 |
+ natl_box, aim.5l_Equatorial_Channel and aim.5l_zon-ave were |
151 |
*not* regenerated since they are already out of date and I don't |
152 |
want to create the impression that they are suddenly working. |
153 |
o removed KAP stuff for DEC's |
154 |
o modified/added many .cvsignore files in */code and */input |
155 |
o added new expt "solid-body.cs-32x32x1" |
156 |
+ this uses an alternative form of ini_curvilinear_grid.F which |
157 |
is not necessarily any better than the current one... |
158 |
|
159 |
checkpoint40pre4 |
160 |
o added re-initialisations of utrans,vtrans,rtrans in |
161 |
calc_common_factors which are crucial for TAF. |
162 |
o extended iMin,jMin range for calc_common_factors, |
163 |
calc_diffusivity |
164 |
o added option ALLOW_PASSIVE_TRACER |
165 |
o a few minor updates and fixes |
166 |
|
167 |
checkpoint40pre3 |
168 |
o created calc_gtr1.F for gad package |
169 |
o split the_main_loop and re-introduced forward_step |
170 |
o some recomputations of nIter0 for TAMC |
171 |
|
172 |
checkpoint40pre2 |
173 |
o Updated to latest branch of AJA, JMC |
174 |
o Added gradient check package |
175 |
o Added routines for passive tracer handling |
176 |
o Added carbon sequestration sensitivity experiment |
177 |
|
178 |
checkpoint39 |
179 |
o Modifications and fixes to support TAMC |
180 |
(mainly missing or wrong directives) |
181 |
o Corrected common blocks when fooling TAMC to produce adjoint I/O |
182 |
in addummy_in_stepping |
183 |
o Updated verification/vero/ (bug fixes in code/, correct pickups in input/) |
184 |
o Enabled "sliced" (xz-,yz-) exchanges, needed for obcs. |
185 |
o Included following packages: |
186 |
cal: calendar |
187 |
exf: external forcing |
188 |
ecco: essential routines to control use of cal, exf |
189 |
(NB: this is not the full ECCO environment) |
190 |
o disabled some packages by default in genmake |
191 |
|
192 |
checkpoint38 |
193 |
o see notes_c37_adj.txt |
194 |
o corrected wrong layer index in external_forcing_t |
195 |
o replaced the_main_loop/forward_step by the_main_loop |
196 |
o removed forceoutput from write_state |
197 |
(replaced criteria for initial/final state) |
198 |
o added runtime flag for pre-C35 pickups: usePickupBeforeC35 |
199 |
|
200 |
checkpoint37 |
201 |
o mdsio.F routine split and packaged in pkg/mdsio |
202 |
(mdsio.F and mdsio_gl.F still exist in eesupp/src but are not |
203 |
used unless genmake -disable=mdsio) |
204 |
o allow a more precise surface-geopotential gradient for the atmosphere |
205 |
taking into account the change in space of Alpha (=1/rho) at the surface. |
206 |
o variable "etaN" (replace cg2d_x) is the surface R-anomaly [r unit] |
207 |
(ocean: sea surface height [m] / atmos: surface pressure anomaly [Pa]) |
208 |
o Change units: Phi_Hydrostatic (=phiHyd), Phi_Surface(=cg2d_x) and |
209 |
Phi_NonHydrostatic (=cg3d_x), all have now the dimension of a potential |
210 |
[m2/s2] (pressure/rhoConst in the ocean ; Geo-Potential in the atmosphere). |
211 |
o Time-Average diagnostics defined as a pseudo package "timeave". |
212 |
o pickup files : old pickup (before c35) did not work with new code (c35 |
213 |
and after) unless activating 2 commented lines in initialise-varia. |
214 |
o Non-Hydrostatic pickup file Pb fixed. |
215 |
o bug with Rigid-lid version (since c35) fixed. |
216 |
|
217 |
checkpoint36 |
218 |
o implement Crank-Nickelson barotropic time-stepping |
219 |
o recover Time-Average diagnostics |
220 |
o fix Pb in checkpoint (PR#19) |
221 |
o AIM become a standard package ; clean unused CPP_kees |
222 |
|
223 |
checkpoint35 |
224 |
o subtantial rewrite of dynamics.f |
225 |
o allows staggered time-stepping |
226 |
o packaged obcs, aim (Atmospheric Physics), zonal_filt, shap_filt |
227 |
o added bottom drag (linear + quadratic) |
228 |
|
229 |
checkpoint34 |
230 |
o Modified exchange routines for correct reverse simulation. |
231 |
o Added verification output to comply with bug fix in impldiff.F |
232 |
as of c33 (exp2, natl_box). |
233 |
o Corrected store directives in dynamics.F |
234 |
o Corrected array boundaries in impldiff.F |
235 |
o Corrected array dimensions in gmredi. |
236 |
Added temporary scalars to avoid storage by TAMC (gmredi, kpp). |
237 |
o Added routine GLOBAL_SUM_INT to global_sum.F |
238 |
o Added mdsio_gl.F for ECCO purposes. |
239 |
|
240 |
checkpoint33 |
241 |
o Fixed bug in lower BC in impldiff.F |
242 |
o Fixed confusion about units of forcing arrays in FFIELDS.h |
243 |
namely Fu,Fv,Qnet,Qsw,EmPmR: |
244 |
- Removed verification/natl_box/code/external_fields_scale.F |
245 |
(did not differ from that in model/src) |
246 |
- Changed units of fu,fv,Qnet,Qsw,EmPmR back to proper units |
247 |
(see FFIELDS.h for description) |
248 |
- Scale fu,fv,Qnet,Qsw,EmPmR when used in external_forcing_surf.F, |
249 |
kpp_calc.F and kpp_transport_t.F |
250 |
- Removed model/src/external_fields_scale.F and calls to it |
251 |
- verification/natl_box uses flux data with "atmospheric" sign so |
252 |
a special version of external_fields_load.F is used to |
253 |
change the data as it's read in. This way, the arrays |
254 |
have the right units and signs at all times tha a user could |
255 |
possibly use them. |
256 |
o Corrected genmake to delete a temporary file during configuration |
257 |
|
258 |
checkpoint32 |
259 |
o Scaling of forcing fields moved from external_forcing.F to |
260 |
external_fields_scale.F, called directly after loading fields. |
261 |
o Surface relaxation terms added to surface tendency fields in |
262 |
extra subroutine. |
263 |
o impldiff.F changed to avoid storing by TAMC of huge intermediate |
264 |
fields. |
265 |
o Changes in GMRedi to comply with packaging structure. |
266 |
o Modifications and bug fixes in KPP package. |
267 |
o Verification experiment for KPP added (verification/nat_box/) |
268 |
|
269 |
checkpoint31 |
270 |
o Packages interface brought in line with defined standard |
271 |
-> new routines packages_...F |
272 |
-> changes in initialise_fixed.F, initialise_varia.F |
273 |
-> enables initialisation interface for ECCO package |
274 |
o Rescaling of external forcing fields immediately after read |
275 |
(removed from external_forcing.F) |
276 |
-> new: surface_fields_scale.F |
277 |
-> affects ini_foorcing.F, external_fields_load.F |
278 |
o Computation of surface tendencies before tendency updates. |
279 |
-> new: external_forcing_surf.F |
280 |
o Change of variable names useGMRedi, useKPP, useECCO |
281 |
o Further changes in dynamics.F, impldiff.F for TAMC |
282 |
o Tested for experiments 0, 2, 4. |
283 |
- not yet tested for GMRedi. |
284 |
- not yet tested for KPP. |
285 |
|
286 |
checkpoint30 |
287 |
o Updates for OBCs |
288 |
o New experiment for test OBCs (internal_wave) |
289 |
o New output.txt in verification/exp4/results/ |
290 |
o Updates for KPP: calculation of viscosity corrected, new variables |
291 |
kpp_dumpFreq and kpp_taveFreq |
292 |
o CPP'd calls to system routines for TARGET_CRAY_VECTOR (P.H.) |
293 |
and entry for T90 in genmake |
294 |
|
295 |
checkpoint29 |
296 |
o packaged KPP and GM/Redi |
297 |
|
298 |
checkpoint28 |
299 |
o Corrected initialization of hFacMin for difference vertical coordinates |
300 |
o Modified calculation of partial cell thickness to more robust algorithm |
301 |
o config_summary.F: replaced write_1D_... by write_0D_... |
302 |
read_write.F: added subroutines write_0D_... |
303 |
o routines calc_common_factors, calc_gs, calc_gt, calc_phi_hyd, find_rho: |
304 |
included some initialisations required for TAMC. |
305 |
o routine calc_isoslopes: modified sqrt computation to make it |
306 |
differentiable for zero argument. |
307 |
o routines dynamics, impldiff: |
308 |
included store directives and tape key computations required for TAMC. |
309 |
o ALL TAMC related changes are between ifdef ALLOW_AUTODIFF_TAMC |
310 |
|
311 |
checkpoint27 |
312 |
o fixed calc_isoslopes() to so that cancellation of terms in tensor |
313 |
formulation works properly with variable resolution. |
314 |
o restructured the calling tree between the_model_main() and dynamics() |
315 |
o split initialise() into initialise_fixed() and initialise_varia() |
316 |
o introduced initialization file pSurfInitFile for free surface (cg2d_x) |
317 |
in new routine ini_psurf() |
318 |
|
319 |
checkpoint26 |
320 |
o moved some #ifdef in optional routines to encompass everything |
321 |
except the argument declarations. This was using up some memory. |
322 |
o fixed macros like _ADT to work with both versions of Linux cpp |
323 |
o cleaned up some unused and uninitialized variables |
324 |
(helps when debugging with strict compile options) |
325 |
o split up CPP_EEOPTIONS.h into options and macros |
326 |
(macros are now in eesupp/inc/CPP_EEMACROS.h) |
327 |
o patch for 2 processor JAM mode |
328 |
|
329 |
checkpoint25 |
330 |
o updates for OBCs and NH |
331 |
o dramatically reduced memory usage |
332 |
o added "JAM" routines for use on Artic network |
333 |
o parameterization of convection by implicit vertical diffusion |
334 |
o added a diagnostic of convective index |
335 |
o moved call to calc_divg_hat() from dynamics() to solve_for_pressure() |
336 |
(this is was partly for OBCs and NH but also in anticipation of |
337 |
an explicit free-surface option) |
338 |
o initial state input files for U and V |
339 |
|
340 |
checkpoint24 |
341 |
o Removed some spurious "REAL"s |
342 |
o Updated KPP to latest version from JPL |
343 |
o Added a COS(latitude) in horizontal viscosity |
344 |
|
345 |
checkpoint23 |
346 |
o Added del^4 diffusion for salt and temperature |
347 |
o Multiple minor fixes (implicit none's, arguments to global_sum, etc.) |
348 |
|
349 |
checkpoint22 |
350 |
o Made many small changes: implicit none, format(i5), etc... |
351 |
o Introduced KPP mixing scheme (compiles and runs but *not* tested) |
352 |
|
353 |
checkpoint21 |
354 |
o Introduced new I/O package that supports direct-access records (mdsio.F) |
355 |
o Split-up mid-level I/O routines |
356 |
o Updated input data for experiments 0,1,2,4 and 5 |
357 |
o Finally removed the genmake.* scripts (everyone seems happy with genmake) |
358 |
|
359 |
checkpoint20 |
360 |
o Tidied up open-boundaries some more |
361 |
o Added non-hydrostatic code |
362 |
o Fixed some input data |
363 |
o Modified MPI start-up to work in "coupled" context. |
364 |
|
365 |
checkpoint19 |
366 |
o Tidied up directory structure for verification experiments. |
367 |
o Added new code for open boundaries. |
368 |
o Corrected advective terms near boundaries. |
369 |
o Added CPP flag for "old UV" geometry and corrected spherical geometry. |
370 |
o Implemented free-slip/no-slip BCs and del^4 dissipation. |
371 |
o Split default parameters out of ini_parms.F into set_defaults.F. |
372 |
|
373 |
checkpoint18 |
374 |
o Further changes for optional code generation with |
375 |
CPP - ugh! |
376 |
|
377 |
checkpoint17 |
378 |
o Beginning to incorporating modularity |
379 |
for supporting atmos. and ocean configs. |
380 |
o Small changes for TAMC complinace |
381 |
o New ultra simple test case. Barotropic box |
382 |
configuration "exp0". |
383 |
|
384 |
checkpoint16 |
385 |
o Minor changes to exchange routines to support |
386 |
accumulation in reverse mode. Adjoint of an |
387 |
assignment is an addition. |
388 |
o Changes to support compilation by TAMC (LR(1) |
389 |
syntax) and by g77 under Linux ( 72 character |
390 |
limit ). |
391 |
|
392 |
checkpoint15 |
393 |
Rewrote exchange routines to allow |
394 |
o General tile <-> tile connectivity. |
395 |
o TAMC reverse mode flag ( is this really needed? ) |
396 |
o Variable width overlap and exchange region widths. |
397 |
o Hooks for sharing data via DMA, Arctic, Memory Channel, |
398 |
shmput/shmget, VIA, SYSV shmem and every other cool |
399 |
communication method. |
400 |
|
401 |
checkpoint14 |
402 |
Consistent isomorphism chages made. These allow dynamical core |
403 |
to support both pressure and meters as a vertical coordinate. |
404 |
|
405 |
checkpoint13 |
406 |
Release which corrects global_max problem and a couple |
407 |
of KGM time-averaging diagnostic errors. Also contains |
408 |
a double-gyre experiment setup as well as the baseline |
409 |
4 degree global template. The double gyre template is |
410 |
organised to allow it to be applied automatically to |
411 |
the baseline configuration. |
412 |
|
413 |
branch-point-rdot |
414 |
A few tidy-ups have been made bt the real point of this |
415 |
check-point (excuse the pun) is to allow a branch to be |
416 |
made for the purposes of adding the rDot alterations. |
417 |
I don't want to commit the rDot to the main-trunk until |
418 |
we've actually tested it... |
419 |
|
420 |
checkpoint12 |
421 |
Tidy up and added generic genmake script (formerly |
422 |
configure script). |
423 |
Released to testers. |
424 |
|
425 |
checkpoint11 |
426 |
Re-arranged initialise() and introduced ini_vertical_grid() |
427 |
and ini_masks_etc(). |
428 |
|
429 |
checkpoint10 |
430 |
Introduced the configure script. |
431 |
Separated out the diags package. |
432 |
Added template for writing time-averages of tile/intermediate quantities. |
433 |
Updated SIZE.h in exp2 and made the data big-endian. |
434 |
|
435 |
checkpoint9 |
436 |
MPI fix. Filename changes (meta/data). salbin*y stuff. |
437 |
General tidy-up. |
438 |
SST.bin SSS.bin added to verification/exp2 |
439 |
|
440 |
checkpoint8 |
441 |
Inludes time-dependant forcing and time-averaging. |
442 |
Works at 4x4 and 2.8125x2.8125 global |
443 |
|
444 |
checkpoint7-4degree-ref |
445 |
Branch from checkpoint7. Released for application to |
446 |
global modeling and general modeling - process studies, regional |
447 |
model etc.. |
448 |
Configured for verification/exp2 - 4 degree global, two process. |
449 |
|
450 |
checkpoint7 |
451 |
Created by cnh |
452 |
Simple 4 degree global simulation |
453 |
configuration. |
454 |
Includes climatological wind, |
455 |
hydrography, bathymetry etc |
456 |
Does not include Heat Flux and E-P |
457 |
|
458 |
checkpoint6 |
459 |
Created by cnh |
460 |
merged checkpoint5 with CD and |
461 |
spherical polar code. |
462 |
Still some problems with GM Redi |
463 |
abd full topography. |
464 |
|
465 |
checkpoint5 |
466 |
Created by AJA |
467 |
contains updates to GM Redi |
468 |
and reordered timestepping loop |
469 |
for Implicit Diffusion. |
470 |
|
471 |
checkpoint4 |
472 |
Created by cnh |
473 |
Contains memory saving macros ( _rdxc etc..) for when |
474 |
grid variations are limited. |
475 |
Contains polynomial coeffs for EOS and knudsen program |
476 |
for generation. |
477 |
|
478 |
checkpoint3 |
479 |
Created by cnh |
480 |
Added extra flags for runtime options |
481 |
Added this file |
482 |
Added implicit free-surface |
483 |
Added pre-conditioner |
484 |
Put compare01 into repository ( compare01/... ) |
485 |
Put data and eedata into repository ( verification/exp1 ) |
486 |
|
487 |
checkpoint2 |
488 |
Created by AJA |
489 |
Added GM/Redi |
490 |
|
491 |
checkpoint1 |
492 |
Created by AJA |
493 |
Restructured kloop in dynamics.F |
494 |
Added non-linear EOS |
495 |
|
496 |
baseline |
497 |
Original checked in code |