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Creating yet another patch: release1_p4
Creating release1_p3 (patch 3).
Further modif's for next patch (p3).
Added tangent linear setup to verification/carbon/
Creating release1_p2 o partial recomputation bug fix for adjoint (kappar...) o switched-off sponge layer code o recomputation fix in thermodynamics
These changes constitute a patch to release1. They were made on a development branch called "release1_final" and are on the main trunk between chkpt44d_post and checkpoint44h_post along with other changes. This code is equivalent to chkpt44d_post with the following patches: - AD-related changes for GMRedi - fixes i KPP (delZ -> drF) - hook to OBCS songe layer code in external_forcing - errorMessageUnit non-zero in eeboot.F - modified test cost function and carbon verif.
Changes encapsulated by checkpoint43a-release1mods and chkpt44d_post on the main trunk. These are: o added missing EXCLUDE_MONITOR flags o changed "e" to "_d" in gmredi_slope_limit, gmredi_slope_psi (incompatible typ in MIN/MAX expressions caused problems on IBM SP3) o in genmake added variable MAKEDEPEND plus resetting for case SunOS o added timer_stats.c routine for IBM SP3 o removed variables in dynamics o real fresh water flux implemented with non-linear free-surface. o few fix (mask in shap_s2, EmPmR in external_field_load, USE_NATURAL_BCS in solve_for_P); o add arguments myIter & myTime to S/R obcs_calc & solve_for_P o merge of relevant stuff from the ecco-branch: - genmake: removed $S64 overwrite for case SunOS - pkg/exf: update and corrections for field swapping and obcs - pkg/ecco: parameter lists for the_model_main, the_main_loop harmonized between ECCO and MITgcm - pkg/autodiff: added flow directives for obcs, mdsio_gl_slice updated checkpointing_lev... lists for obcs - model/src: minor changes in forward_step, plot_field added directive for divided adjoint in the_main_loop - pkg/mdsio: added mdsio_gl_slice o check parameters & config (chkpt44a_pre,post) o OBC and NonLin_FrSurf. o fix bug in mom_vi_del2uv o select when filters are applied ; add options to zonal_filter (data.zonfilt) o gmredi: fix Pb in the adiabatic form ; add options (.e.g. Bolus advection) o update AIM experiments (NCEP input files) o improve and extend diagnostics (Monitor, TimeAve with NonLin-FrSurf) o added some stuff for AD These were merged with cvs co -r release1 -P MITgcm cd MITgcm cvs update -kk cvs update -j checkpoint43a-release1mods -j chkpt44d_post -d -P -kk
Merging changes on MAIN between checkpoint43 and checkpoint43a-release1mods Command: cvs -q update -jcheckpoint43 -jcheckpoint43a-release1mods -d -P These changes are most of the changes between c43 and c44 except those that occured after "12:45 11 Jan 2002". As far as I can tell it is checkpoint43 with the following mods: o fix bug in mom_vi_del2uv o select when filters are applied ; add options to zonal_filter (data.zonfilt) o gmredi: fix Pb in the adiabatic form ; add options (.e.g. Bolus advection) o update AIM experiments (NCEP input files) o improve and extend diagnostics (Monitor, TimeAve with NonLin-FrSurf) o added some stuff for AD o Jamar wet-points This update does not contain the following mods that are in checkpoint44 o bug fix in pkg/generic_advdiff/ - thread related bug, bi,bj arguments in vertical advection routines o some changes to pkg/autodiff, pkg/cost, pkg/exf, pkg/ecco, verification/carbon and model/src/ related to adjoint o some new Matlab scripts for diagnosing model density - utils/matlab/dens_poly3.m and ini_poly3.m The list of exclusions is accurate based on a "cvs diff". The list of inclusions is based on the record in doc/tag-index which may not be complete.
Annotation of c43.
Creating checkpoint42
Annotation for c41
Annotations for c40
Annotation for c40pre9
Checkpoint40pre8 (postponing c40)
Creating checkpoint40 --- no pre, no post, no nothin'
Creating checkpoint40pre7.
New tag checkpoint40pre6.
New tag: checkpoint40pre5
checkpoint40pre4
Doc. for checkpoint40pre3
Doc. for checkpoint40pre2
checkpoint39
checkpoint39
See doc/tag-index and doc/notes_c37_adj.txt Preparation for stand-alone autodifferentiability.
new tag
add a new tag (checkpoint36)
New checkpoint
Checkpoint34 (update).
Checkpoint34.
New tag (checkpoint32)
Notes for checkpoint32 added.
Comments for checkpoint31.
New tag.
New checkpoint (29).
Included documentation of changes from c27 to c28. (P.H.)
New checkpoint.
New checkpoint
Checkpoint 25
New checkpoint
New checkpoint
Entered checkpoint22 into tag-index.
New entry in tag-index for checkpoint21
Creating checkpoint20
Notes for tag checkpoint19.
Updates to tag0index for checkpoint18
Record updates for checkpoint17
Checkpoint16 documentation updates
CHanges to exchange routines for general tile <-> tile connectivity, DMA and shared memory communication hooks, variable width overlaps and TAMC reverse mode flag.
Consistent isomorphism changes
Added tag-index record for checkpoint13
Creating a tag in order to make a branch. See tag-index for info.
*** empty log message ***
New tag checkpoint11
Making tag checkpoint10
o General tidy-up. o MPI fix. Filename changes (meta/data). salbin*y stuff. o SST.bin SSS.bin added to verification/exp2
New tag and tag-index.
Fairly coplete 4 degree global intercomparison setup. Includes changes to make convective adjustment and hydrostatic pressure correct as well as IO for climatological datasets
Added tag-index record for checkpoint6
Added tag description
Added notes for new tag - checkpoint4
Added tag-index file for recording "release" information associated with a tag.
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