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$Header: /u/gcmpack/MITgcm/doc/tag-index,v 1.53.2.27 2003/02/14 16:37:34 dimitri Exp $ |
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|
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Notes on tags used in MITgcmUV |
4 |
============================== |
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|
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release1_p12_pre |
7 |
o Added missing /* */ to CPP comments in pkg/seaice, pkg/exf, |
8 |
kpp_transport_t.F, forward_step.F, and the_main_loop.F |
9 |
o Updated useSingleCpuIO option in mdsio_writefield.F to |
10 |
work with multi-field files, e.g., for single-file pickup. |
11 |
o pkg/seaice: |
12 |
- bug fix in growth.F: QNET for no shortwave case |
13 |
- added HeffFile for specifying initial sea-ice thickness |
14 |
- changed SEAICE_EXTERNAL_FLUXES wind stress implementation |
15 |
- adjoint-friendly modifications |
16 |
|
17 |
release1_p11 |
18 |
o Modifications for using pkg/exf with pkg/seaice |
19 |
- improved description of the various forcing configurations |
20 |
- added basic radiation bulk formulae to pkg/exf |
21 |
- units/sign fix for evap computation in exf_getffields.F |
22 |
- updated verification/global_with_exf/results/output.txt |
23 |
o Added pkg/sbo for computing IERS Special Bureau for the Oceans |
24 |
(SBO) core products, including oceanic mass, center-of-mass, |
25 |
angular, and bottom pressure (see pkg/sbo/README.sbo). |
26 |
o Lower bound for viscosity/diffusivity in pkg/kpp/kpp_routines.F |
27 |
to avoid negative values in shallow regions. |
28 |
- updated verification/natl_box/results/output.txt |
29 |
- updated verification/lab_sea/results/output.txt |
30 |
o MPI gather, scatter: eesupp/src/gather_2d.F and scatter_2d.F |
31 |
o Added useSingleCpuIO option (see PARAMS.h). |
32 |
|
33 |
release1_p10 |
34 |
o modifications for using pkg/exf with pkg/seaice |
35 |
- pkg/seaice CPP options SEAICE_EXTERNAL_FORCING |
36 |
and SEAICE_EXTERNAL_FLUXES |
37 |
- pkg/exf CPP options EXF_READ_EVAP and |
38 |
EXF_NO_BULK_COMPUTATIONS |
39 |
- usage examples are Experiments 8 and 9 in |
40 |
verification/lab_sea/README |
41 |
- verification/lab_sea default experiment now uses |
42 |
pkg/gmredi, pkg/kpp, pkg/seaice, and pkg/exf |
43 |
|
44 |
release1_p9 |
45 |
o pkg/seaice |
46 |
- removed GOTO's and added taf directives |
47 |
- double precision constants to reduce the g77 (Linux) |
48 |
to F77 (SGI) differences reported in release1_p8 |
49 |
o tools/genmake |
50 |
- added SGI options |
51 |
o verification/testscript |
52 |
- updated to that of checkpoint47a_post |
53 |
o verification/global_ocean.90x40x15/input/eedata |
54 |
- modified for SGI f77 compatibility |
55 |
o verification/lab_sea |
56 |
- added description of sea-ice model |
57 |
- added missing matlab routines |
58 |
- added test of thermodynamics parallelization |
59 |
|
60 |
release1_p8 |
61 |
o verification/natl_box: |
62 |
updating new external_fields_load routine |
63 |
o New package: pkg/seaice |
64 |
Sea ice model by D. Menemenlis (JPL) and Jinlun Zhang (Seattle). |
65 |
The sea-ice code is based on Hibler (1979-1980). |
66 |
Two sea-ice dynamic solvers, ADI and LSR, are included. |
67 |
In addition to computing prognostic sea-ice variables and diagnosing |
68 |
the forcing/external data fields that drive the ocean model, |
69 |
SEAICE_MODEL also sets theta to the freezing point under sea-ice. |
70 |
The implied surface heat flux is then stored in variable |
71 |
surfaceTendencyTice, which is needed by KPP package (kpp_calc.F and |
72 |
kpp_transport_t.F) to diagnose surface buoyancy fluxes and for the |
73 |
non-local transport term. Because this call precedes model |
74 |
thermodynamics, temperature under sea-ice may not be "exactly" at |
75 |
the freezing point by the time theta is dumped or time-averaged. |
76 |
N.B.: fairly large differences in accuracy occur across |
77 |
different platforms/compilers; comparison between |
78 |
g77 (Linux) and F77 (SGI Origin 2000/MIPSpro) |
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generated output gives: |
80 |
T S U V |
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C D M c m s m s m s m s |
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n p a R g m m e . m m e . m m e . m m e . |
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f n k u 2 i a a d i a a d i a a d i a a d |
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g d e n d n x n . n x n . n x n . n x n . |
85 |
|
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Y Y Y Y 5 5 7 7 7 8 10 9 6 6 6 6 7 5 7 5 7 FAIL lab_sea |
87 |
|
88 |
release1_p7 |
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o GAD: |
90 |
- generated new common blocks to account for call of |
91 |
same gad routines with differing traceridentities |
92 |
(needed to modify tracerIdentity indices in GAD.h) |
93 |
- generated separate common blocks for case useCubedSphereExchange |
94 |
(Department of Futurology) |
95 |
- parameter lists to gmredi_?transport: added tracerIdentity |
96 |
- added new key indices to tamc.h |
97 |
o external_fields_load: |
98 |
- added this routine to TAF list |
99 |
- needed to make some common blocks global and additional storing |
100 |
along the same lines as exf package (checkpoint_lev?_directives.h) |
101 |
o exf: |
102 |
updated external forcing package |
103 |
- bug fixes carried over from ecco-branch |
104 |
(missing OBCS_OPTIONS.h in two routines) |
105 |
- enable easy to use "no forcing". |
106 |
- added exf I/O for atmospheric loading |
107 |
- added exf I/O for runoff data |
108 |
- transfered scaling between exf <-> MITgcm to exf namelist |
109 |
o Adding new verification experiment global_with_exf. |
110 |
This verification experiment is almost identical to the |
111 |
global_ocean.90x40x15 experiment, except that it uses |
112 |
the exf (and cal) package instead of the |
113 |
external_fields_load routine (cf README file). |
114 |
|
115 |
release1_p6 |
116 |
o fixed the verification/global_ocean.90x40x15 experiment: |
117 |
- new bathymetry (the world according to A., JMC, and M.) |
118 |
- new initial fields and forcing fields (*.bin files) |
119 |
- new POLY3.COEFFS (for the next release one should switch to a full |
120 |
equation of state) |
121 |
- fixed several errors and redundancies in the data file |
122 |
- experiment uses looped cells |
123 |
- added matlab directory with diagnostic scripts for plotting of output |
124 |
|
125 |
release1_p5 |
126 |
o import recent fix from MAIN branch: |
127 |
- use recip_dx*,recip_dy* instead of /dx*,/dy* in orlanski_E,W,N,S |
128 |
- change phiMin in exp1 (to agree with documentation) |
129 |
from checkpoint45 to checkpoint45a_post: |
130 |
- specific exchange for X-slice domain (case Ny=1) |
131 |
- argument futureIter of S/R obcs_calc missing in |
132 |
exp4 & internal_wave /code |
133 |
- solve_for_pressure : set cg2d_x to zero where OBCS are applied |
134 |
from checkpoint44f_post to checkpoint44g_post: |
135 |
- fix surface correction term in multiDimAdvection |
136 |
(affects plume_on_slope results |
137 |
o bug fix in packages_readparms (missing ALLOW_CALENDAR) |
138 |
o bug fix in CG2D.h (correct array size for LETS_MAKE_JAM |
139 |
o Adjoint-related bug fixes in kpp: |
140 |
- kpp_calc: sore of kpphbl avoids recomputation/call to S/R kppmix |
141 |
- kpp_routines: store of Rib avoids partial recomputation bug of TAF. |
142 |
o added Eliassen-Palm flux hooks (dynamics,ini_fields) |
143 |
o removed unused TAF keys iikey, idkey (dynamics,thermodynamics) |
144 |
o flow directives: |
145 |
- new for S/R do_the_model_io |
146 |
- enhanced for S/R checkpoint |
147 |
o added Eliassen Palm flux controls to gradient check package |
148 |
o new ctrl package |
149 |
- adopted from ECCO environment to enable optimization |
150 |
- added Eliassen Palm fluxes to controls |
151 |
- adjusted global_ocean.90x40x15/ and carbon/ accordingly |
152 |
|
153 |
release1_p4 |
154 |
o Removed f90 comments ("!") |
155 |
o Modified initialisations to enable exf package for MITgcm |
156 |
(without invoking ECCO_PACKAGE). |
157 |
o modifications to gradient check package (Martin Losch) |
158 |
- enable centered differences |
159 |
- modified format of standard output |
160 |
|
161 |
release1_p3 |
162 |
o added tangent linear setup to verification/carbon/ |
163 |
o added adjoint sensitivity setup to verification/global_ocean... |
164 |
o moved packages_init_variables before convective_adjustment |
165 |
o output of verif. which use GMRedi brought up-to-date with |
166 |
MAIN trunk (those were re-created after changes in GMRedi) |
167 |
o included CPP option SINGLE_LAYER_MODE |
168 |
to configure barotropic setup (Martin Losch). |
169 |
o Removed auxiliary variable in impldiff |
170 |
(caused numerical differences with MAIN trunk routine). |
171 |
o Introduced CPP option ALLOW_AUTODIFF_MONITOR to |
172 |
disable adcommon.h/g_common.h by default. |
173 |
o Cleaned exchange calls in cg2d. |
174 |
|
175 |
release1_p2 |
176 |
o fixed array boundary problem for adjoint |
177 |
(related to partial recomputation within subroutine |
178 |
related to dynamics -> calc_viscosity -> mom_... |
179 |
o fixed recomputation in thermodynamics |
180 |
o prepare (but not complete) recomputation problem in impldiff |
181 |
o fixed problem for adjoint of global_max |
182 |
o switched off sponge layer code in external_forcing |
183 |
|
184 |
release1_p1 |
185 |
o merged necessary patches: |
186 |
- AD-related changes for GMRedi |
187 |
- fixes i KPP (delZ -> drF) |
188 |
- hook to OBCS songe layer code in external_forcing |
189 |
- errorMessageUnit non-zero in eeboot.F |
190 |
- modified test cost function and carbon verif. |
191 |
|
192 |
release1_chkpt44d_post = chkpt44d_post |
193 |
|
194 |
chkpt44d_pre,post |
195 |
o added missing EXCLUDE_MONITOR flags |
196 |
o changed "e" to "_d" in gmredi_slope_limit, gmredi_slope_psi |
197 |
(incompatible typ in MIN/MAX expressions caused problems |
198 |
on IBM SP3) |
199 |
o in genmake added variable MAKEDEPEND |
200 |
plus resetting for case SunOS |
201 |
o added timer_stats.c routine for IBM SP3 |
202 |
o removed variables in dynamics |
203 |
|
204 |
o real fresh water flux implemented with non-linear free-surface. |
205 |
|
206 |
chkpt44c_pre,post |
207 |
o few fix (mask in shap_s2, EmPmR in external_field_load, |
208 |
USE_NATURAL_BCS in solve_for_P); |
209 |
o add arguments myIter & myTime to S/R obcs_calc & solve_for_P |
210 |
|
211 |
checkpoint44b_pre/_post |
212 |
o merge of relevant stuff from the ecco-branch: |
213 |
- genmake: removed $S64 overwrite for case SunOS |
214 |
- pkg/exf: update and corrections for field swapping and obcs |
215 |
- pkg/ecco: parameter lists for the_model_main, the_main_loop |
216 |
harmonized between ECCO and MITgcm |
217 |
- pkg/autodiff: added flow directives for obcs, mdsio_gl_slice |
218 |
updated checkpointing_lev... lists for obcs |
219 |
- model/src: minor changes in forward_step, plot_field |
220 |
added directive for divided adjoint in the_main_loop |
221 |
- pkg/mdsio: added mdsio_gl_slice |
222 |
|
223 |
o check parameters & config (chkpt44a_pre,post) |
224 |
o OBC and NonLin_FrSurf. |
225 |
|
226 |
checkpoint44 |
227 |
o fix bug in mom_vi_del2uv |
228 |
o select when filters are applied ; add options to zonal_filter (data.zonfilt) |
229 |
o gmredi: fix Pb in the adiabatic form ; add options (.e.g. Bolus advection) |
230 |
o update AIM experiments (NCEP input files) |
231 |
o improve and extend diagnostics (Monitor, TimeAve with NonLin-FrSurf) |
232 |
o added some stuff for AD |
233 |
|
234 |
checkpoint43 |
235 |
o added two new advection tests |
236 |
o added global 4x4 degree ocean test |
237 |
o added test of H&S94 with free surface on cube |
238 |
o some final mods for gradient check, adjoint,... |
239 |
|
240 |
checkpoint42 |
241 |
Fixed AD-related problems: |
242 |
o Store directives up-to-date with re-arranged Adams-Bashforth |
243 |
(mainly thermodynamics.F) |
244 |
o New store directives for multi-dim. advection schemes |
245 |
* new CPP flag ALLOW_MULTI_DIM_ADVECTION |
246 |
* new common block and key passkey |
247 |
(mainly gad_advection.F) |
248 |
o Modified store directives for split of dynamics/thermodynamics |
249 |
for the case ALLOW_KPP |
250 |
o Cleaned argument list for timestep_tracer.F |
251 |
|
252 |
checkpoint41 |
253 |
o re-formatted/added comments in prologues of key subroutines |
254 |
to work with protex |
255 |
|
256 |
checkpoint40 |
257 |
o moved calc_gs, calc_gt and calc_tr1 back to model/src |
258 |
o added FLT (floats) package from Arne along with demo. experiment |
259 |
o re-arranged Adams-Bashforth scheme for tracers to allow easier |
260 |
implementation of forward-in-time forcing terms |
261 |
o more mods for non-linear free-surface including new variable |
262 |
o modified multi-dim method to work on cube |
263 |
o bug fix in KPP (from DM) |
264 |
|
265 |
checkpoint40pre9 |
266 |
o added DST advection schemes |
267 |
o fix MPI bug on SGI's |
268 |
o modifications for non-linear free-surface |
269 |
o fixed conditionals for fixed flow/passive tracer only mode |
270 |
o added tension/strain form of stress tensor |
271 |
o changes to commenting of arguments for TAF/TAMC |
272 |
o added/updated many matlab scripts |
273 |
o added multi-dimensional advection method for tracers |
274 |
|
275 |
checkpoint40pre8 |
276 |
o new package rw/ |
277 |
Added method for dumping intermediate local arrays: |
278 |
mdsio_writetile - same as mdsio_writefield except works from inside |
279 |
bi,bj loop |
280 |
mdsio_writelocal - same as mdsio_writetile except works for local |
281 |
arrays |
282 |
write_local_r? - higher-level wrapper for mdsio_writelocal |
283 |
Controlled by diagFreq. Defaults to zero (ie. no dumps) |
284 |
Example given at end of mom_vecinv.F that dumps some local arrays. |
285 |
o replaced calc_mom_rhs.F by mom_fluxform.F/mom_vecinc.F to |
286 |
control flux-form versus vector invariant code. |
287 |
Switch is runtime flag vectorInvariantMomentum (defaults to false) |
288 |
or genmake -DISABLE ... |
289 |
o TAMC-related update to cope with mom_fluxform.F/mom_vecinc.F |
290 |
(additional storing is now needed for case vecinv; |
291 |
currently nothing implemented to switch this storing off |
292 |
in case fluxform is used since no CPP flag available). |
293 |
|
294 |
checkpoint40pre7 |
295 |
o bug fix in dynamics.F |
296 |
calc_viscosity called before k=1,Nr loop. |
297 |
o added some #ifdef's ALLOW_PASSIVE_TRACER |
298 |
o cleaned initialisations in ctrl_map_ini |
299 |
related to TAF |
300 |
|
301 |
checkpoint40pre6 |
302 |
o split dynamics into thermodynamics & dynamics |
303 |
o corresponding split of calc_diffusivity into |
304 |
calc_diffusivity, calc_viscosity |
305 |
(kpp_calc_diff, kpp_calc_visc). |
306 |
o Added diffkr, kapgm to control variables |
307 |
o bug fix in gmredi_slope_limit for ldd97 |
308 |
|
309 |
checkpoint40pre5 |
310 |
o proper initialization of Adams-Bashforth time stepping |
311 |
+ uses forward step for very first step of model (iter=0) |
312 |
o re-generated *all* output since almost all output is modified by this |
313 |
change (sorry but we've been putting this one off for about 2 years) |
314 |
+ natl_box, aim.5l_Equatorial_Channel and aim.5l_zon-ave were |
315 |
*not* regenerated since they are already out of date and I don't |
316 |
want to create the impression that they are suddenly working. |
317 |
o removed KAP stuff for DEC's |
318 |
o modified/added many .cvsignore files in */code and */input |
319 |
o added new expt "solid-body.cs-32x32x1" |
320 |
+ this uses an alternative form of ini_curvilinear_grid.F which |
321 |
is not necessarily any better than the current one... |
322 |
|
323 |
checkpoint40pre4 |
324 |
o added re-initialisations of utrans,vtrans,rtrans in |
325 |
calc_common_factors which are crucial for TAF. |
326 |
o extended iMin,jMin range for calc_common_factors, |
327 |
calc_diffusivity |
328 |
o added option ALLOW_PASSIVE_TRACER |
329 |
o a few minor updates and fixes |
330 |
|
331 |
checkpoint40pre3 |
332 |
o created calc_gtr1.F for gad package |
333 |
o split the_main_loop and re-introduced forward_step |
334 |
o some recomputations of nIter0 for TAMC |
335 |
|
336 |
checkpoint40pre2 |
337 |
o Updated to latest branch of AJA, JMC |
338 |
o Added gradient check package |
339 |
o Added routines for passive tracer handling |
340 |
o Added carbon sequestration sensitivity experiment |
341 |
|
342 |
checkpoint39 |
343 |
o Modifications and fixes to support TAMC |
344 |
(mainly missing or wrong directives) |
345 |
o Corrected common blocks when fooling TAMC to produce adjoint I/O |
346 |
in addummy_in_stepping |
347 |
o Updated verification/vero/ (bug fixes in code/, correct pickups in input/) |
348 |
o Enabled "sliced" (xz-,yz-) exchanges, needed for obcs. |
349 |
o Included following packages: |
350 |
cal: calendar |
351 |
exf: external forcing |
352 |
ecco: essential routines to control use of cal, exf |
353 |
(NB: this is not the full ECCO environment) |
354 |
o disabled some packages by default in genmake |
355 |
|
356 |
checkpoint38 |
357 |
o see notes_c37_adj.txt |
358 |
o corrected wrong layer index in external_forcing_t |
359 |
o replaced the_main_loop/forward_step by the_main_loop |
360 |
o removed forceoutput from write_state |
361 |
(replaced criteria for initial/final state) |
362 |
o added runtime flag for pre-C35 pickups: usePickupBeforeC35 |
363 |
|
364 |
checkpoint37 |
365 |
o mdsio.F routine split and packaged in pkg/mdsio |
366 |
(mdsio.F and mdsio_gl.F still exist in eesupp/src but are not |
367 |
used unless genmake -disable=mdsio) |
368 |
o allow a more precise surface-geopotential gradient for the atmosphere |
369 |
taking into account the change in space of Alpha (=1/rho) at the surface. |
370 |
o variable "etaN" (replace cg2d_x) is the surface R-anomaly [r unit] |
371 |
(ocean: sea surface height [m] / atmos: surface pressure anomaly [Pa]) |
372 |
o Change units: Phi_Hydrostatic (=phiHyd), Phi_Surface(=cg2d_x) and |
373 |
Phi_NonHydrostatic (=cg3d_x), all have now the dimension of a potential |
374 |
[m2/s2] (pressure/rhoConst in the ocean ; Geo-Potential in the atmosphere). |
375 |
o Time-Average diagnostics defined as a pseudo package "timeave". |
376 |
o pickup files : old pickup (before c35) did not work with new code (c35 |
377 |
and after) unless activating 2 commented lines in initialise-varia. |
378 |
o Non-Hydrostatic pickup file Pb fixed. |
379 |
o bug with Rigid-lid version (since c35) fixed. |
380 |
|
381 |
checkpoint36 |
382 |
o implement Crank-Nickelson barotropic time-stepping |
383 |
o recover Time-Average diagnostics |
384 |
o fix Pb in checkpoint (PR#19) |
385 |
o AIM become a standard package ; clean unused CPP_kees |
386 |
|
387 |
checkpoint35 |
388 |
o subtantial rewrite of dynamics.f |
389 |
o allows staggered time-stepping |
390 |
o packaged obcs, aim (Atmospheric Physics), zonal_filt, shap_filt |
391 |
o added bottom drag (linear + quadratic) |
392 |
|
393 |
checkpoint34 |
394 |
o Modified exchange routines for correct reverse simulation. |
395 |
o Added verification output to comply with bug fix in impldiff.F |
396 |
as of c33 (exp2, natl_box). |
397 |
o Corrected store directives in dynamics.F |
398 |
o Corrected array boundaries in impldiff.F |
399 |
o Corrected array dimensions in gmredi. |
400 |
Added temporary scalars to avoid storage by TAMC (gmredi, kpp). |
401 |
o Added routine GLOBAL_SUM_INT to global_sum.F |
402 |
o Added mdsio_gl.F for ECCO purposes. |
403 |
|
404 |
checkpoint33 |
405 |
o Fixed bug in lower BC in impldiff.F |
406 |
o Fixed confusion about units of forcing arrays in FFIELDS.h |
407 |
namely Fu,Fv,Qnet,Qsw,EmPmR: |
408 |
- Removed verification/natl_box/code/external_fields_scale.F |
409 |
(did not differ from that in model/src) |
410 |
- Changed units of fu,fv,Qnet,Qsw,EmPmR back to proper units |
411 |
(see FFIELDS.h for description) |
412 |
- Scale fu,fv,Qnet,Qsw,EmPmR when used in external_forcing_surf.F, |
413 |
kpp_calc.F and kpp_transport_t.F |
414 |
- Removed model/src/external_fields_scale.F and calls to it |
415 |
- verification/natl_box uses flux data with "atmospheric" sign so |
416 |
a special version of external_fields_load.F is used to |
417 |
change the data as it's read in. This way, the arrays |
418 |
have the right units and signs at all times tha a user could |
419 |
possibly use them. |
420 |
o Corrected genmake to delete a temporary file during configuration |
421 |
|
422 |
checkpoint32 |
423 |
o Scaling of forcing fields moved from external_forcing.F to |
424 |
external_fields_scale.F, called directly after loading fields. |
425 |
o Surface relaxation terms added to surface tendency fields in |
426 |
extra subroutine. |
427 |
o impldiff.F changed to avoid storing by TAMC of huge intermediate |
428 |
fields. |
429 |
o Changes in GMRedi to comply with packaging structure. |
430 |
o Modifications and bug fixes in KPP package. |
431 |
o Verification experiment for KPP added (verification/nat_box/) |
432 |
|
433 |
checkpoint31 |
434 |
o Packages interface brought in line with defined standard |
435 |
-> new routines packages_...F |
436 |
-> changes in initialise_fixed.F, initialise_varia.F |
437 |
-> enables initialisation interface for ECCO package |
438 |
o Rescaling of external forcing fields immediately after read |
439 |
(removed from external_forcing.F) |
440 |
-> new: surface_fields_scale.F |
441 |
-> affects ini_foorcing.F, external_fields_load.F |
442 |
o Computation of surface tendencies before tendency updates. |
443 |
-> new: external_forcing_surf.F |
444 |
o Change of variable names useGMRedi, useKPP, useECCO |
445 |
o Further changes in dynamics.F, impldiff.F for TAMC |
446 |
o Tested for experiments 0, 2, 4. |
447 |
- not yet tested for GMRedi. |
448 |
- not yet tested for KPP. |
449 |
|
450 |
checkpoint30 |
451 |
o Updates for OBCs |
452 |
o New experiment for test OBCs (internal_wave) |
453 |
o New output.txt in verification/exp4/results/ |
454 |
o Updates for KPP: calculation of viscosity corrected, new variables |
455 |
kpp_dumpFreq and kpp_taveFreq |
456 |
o CPP'd calls to system routines for TARGET_CRAY_VECTOR (P.H.) |
457 |
and entry for T90 in genmake |
458 |
|
459 |
checkpoint29 |
460 |
o packaged KPP and GM/Redi |
461 |
|
462 |
checkpoint28 |
463 |
o Corrected initialization of hFacMin for difference vertical coordinates |
464 |
o Modified calculation of partial cell thickness to more robust algorithm |
465 |
o config_summary.F: replaced write_1D_... by write_0D_... |
466 |
read_write.F: added subroutines write_0D_... |
467 |
o routines calc_common_factors, calc_gs, calc_gt, calc_phi_hyd, find_rho: |
468 |
included some initialisations required for TAMC. |
469 |
o routine calc_isoslopes: modified sqrt computation to make it |
470 |
differentiable for zero argument. |
471 |
o routines dynamics, impldiff: |
472 |
included store directives and tape key computations required for TAMC. |
473 |
o ALL TAMC related changes are between ifdef ALLOW_AUTODIFF_TAMC |
474 |
|
475 |
checkpoint27 |
476 |
o fixed calc_isoslopes() to so that cancellation of terms in tensor |
477 |
formulation works properly with variable resolution. |
478 |
o restructured the calling tree between the_model_main() and dynamics() |
479 |
o split initialise() into initialise_fixed() and initialise_varia() |
480 |
o introduced initialization file pSurfInitFile for free surface (cg2d_x) |
481 |
in new routine ini_psurf() |
482 |
|
483 |
checkpoint26 |
484 |
o moved some #ifdef in optional routines to encompass everything |
485 |
except the argument declarations. This was using up some memory. |
486 |
o fixed macros like _ADT to work with both versions of Linux cpp |
487 |
o cleaned up some unused and uninitialized variables |
488 |
(helps when debugging with strict compile options) |
489 |
o split up CPP_EEOPTIONS.h into options and macros |
490 |
(macros are now in eesupp/inc/CPP_EEMACROS.h) |
491 |
o patch for 2 processor JAM mode |
492 |
|
493 |
checkpoint25 |
494 |
o updates for OBCs and NH |
495 |
o dramatically reduced memory usage |
496 |
o added "JAM" routines for use on Artic network |
497 |
o parameterization of convection by implicit vertical diffusion |
498 |
o added a diagnostic of convective index |
499 |
o moved call to calc_divg_hat() from dynamics() to solve_for_pressure() |
500 |
(this is was partly for OBCs and NH but also in anticipation of |
501 |
an explicit free-surface option) |
502 |
o initial state input files for U and V |
503 |
|
504 |
checkpoint24 |
505 |
o Removed some spurious "REAL"s |
506 |
o Updated KPP to latest version from JPL |
507 |
o Added a COS(latitude) in horizontal viscosity |
508 |
|
509 |
checkpoint23 |
510 |
o Added del^4 diffusion for salt and temperature |
511 |
o Multiple minor fixes (implicit none's, arguments to global_sum, etc.) |
512 |
|
513 |
checkpoint22 |
514 |
o Made many small changes: implicit none, format(i5), etc... |
515 |
o Introduced KPP mixing scheme (compiles and runs but *not* tested) |
516 |
|
517 |
checkpoint21 |
518 |
o Introduced new I/O package that supports direct-access records (mdsio.F) |
519 |
o Split-up mid-level I/O routines |
520 |
o Updated input data for experiments 0,1,2,4 and 5 |
521 |
o Finally removed the genmake.* scripts (everyone seems happy with genmake) |
522 |
|
523 |
checkpoint20 |
524 |
o Tidied up open-boundaries some more |
525 |
o Added non-hydrostatic code |
526 |
o Fixed some input data |
527 |
o Modified MPI start-up to work in "coupled" context. |
528 |
|
529 |
checkpoint19 |
530 |
o Tidied up directory structure for verification experiments. |
531 |
o Added new code for open boundaries. |
532 |
o Corrected advective terms near boundaries. |
533 |
o Added CPP flag for "old UV" geometry and corrected spherical geometry. |
534 |
o Implemented free-slip/no-slip BCs and del^4 dissipation. |
535 |
o Split default parameters out of ini_parms.F into set_defaults.F. |
536 |
|
537 |
checkpoint18 |
538 |
o Further changes for optional code generation with |
539 |
CPP - ugh! |
540 |
|
541 |
checkpoint17 |
542 |
o Beginning to incorporating modularity |
543 |
for supporting atmos. and ocean configs. |
544 |
o Small changes for TAMC complinace |
545 |
o New ultra simple test case. Barotropic box |
546 |
configuration "exp0". |
547 |
|
548 |
checkpoint16 |
549 |
o Minor changes to exchange routines to support |
550 |
accumulation in reverse mode. Adjoint of an |
551 |
assignment is an addition. |
552 |
o Changes to support compilation by TAMC (LR(1) |
553 |
syntax) and by g77 under Linux ( 72 character |
554 |
limit ). |
555 |
|
556 |
checkpoint15 |
557 |
Rewrote exchange routines to allow |
558 |
o General tile <-> tile connectivity. |
559 |
o TAMC reverse mode flag ( is this really needed? ) |
560 |
o Variable width overlap and exchange region widths. |
561 |
o Hooks for sharing data via DMA, Arctic, Memory Channel, |
562 |
shmput/shmget, VIA, SYSV shmem and every other cool |
563 |
communication method. |
564 |
|
565 |
checkpoint14 |
566 |
Consistent isomorphism chages made. These allow dynamical core |
567 |
to support both pressure and meters as a vertical coordinate. |
568 |
|
569 |
checkpoint13 |
570 |
Release which corrects global_max problem and a couple |
571 |
of KGM time-averaging diagnostic errors. Also contains |
572 |
a double-gyre experiment setup as well as the baseline |
573 |
4 degree global template. The double gyre template is |
574 |
organised to allow it to be applied automatically to |
575 |
the baseline configuration. |
576 |
|
577 |
branch-point-rdot |
578 |
A few tidy-ups have been made bt the real point of this |
579 |
check-point (excuse the pun) is to allow a branch to be |
580 |
made for the purposes of adding the rDot alterations. |
581 |
I don't want to commit the rDot to the main-trunk until |
582 |
we've actually tested it... |
583 |
|
584 |
checkpoint12 |
585 |
Tidy up and added generic genmake script (formerly |
586 |
configure script). |
587 |
Released to testers. |
588 |
|
589 |
checkpoint11 |
590 |
Re-arranged initialise() and introduced ini_vertical_grid() |
591 |
and ini_masks_etc(). |
592 |
|
593 |
checkpoint10 |
594 |
Introduced the configure script. |
595 |
Separated out the diags package. |
596 |
Added template for writing time-averages of tile/intermediate quantities. |
597 |
Updated SIZE.h in exp2 and made the data big-endian. |
598 |
|
599 |
checkpoint9 |
600 |
MPI fix. Filename changes (meta/data). salbin*y stuff. |
601 |
General tidy-up. |
602 |
SST.bin SSS.bin added to verification/exp2 |
603 |
|
604 |
checkpoint8 |
605 |
Inludes time-dependant forcing and time-averaging. |
606 |
Works at 4x4 and 2.8125x2.8125 global |
607 |
|
608 |
checkpoint7-4degree-ref |
609 |
Branch from checkpoint7. Released for application to |
610 |
global modeling and general modeling - process studies, regional |
611 |
model etc.. |
612 |
Configured for verification/exp2 - 4 degree global, two process. |
613 |
|
614 |
checkpoint7 |
615 |
Created by cnh |
616 |
Simple 4 degree global simulation |
617 |
configuration. |
618 |
Includes climatological wind, |
619 |
hydrography, bathymetry etc |
620 |
Does not include Heat Flux and E-P |
621 |
|
622 |
checkpoint6 |
623 |
Created by cnh |
624 |
merged checkpoint5 with CD and |
625 |
spherical polar code. |
626 |
Still some problems with GM Redi |
627 |
abd full topography. |
628 |
|
629 |
checkpoint5 |
630 |
Created by AJA |
631 |
contains updates to GM Redi |
632 |
and reordered timestepping loop |
633 |
for Implicit Diffusion. |
634 |
|
635 |
checkpoint4 |
636 |
Created by cnh |
637 |
Contains memory saving macros ( _rdxc etc..) for when |
638 |
grid variations are limited. |
639 |
Contains polynomial coeffs for EOS and knudsen program |
640 |
for generation. |
641 |
|
642 |
checkpoint3 |
643 |
Created by cnh |
644 |
Added extra flags for runtime options |
645 |
Added this file |
646 |
Added implicit free-surface |
647 |
Added pre-conditioner |
648 |
Put compare01 into repository ( compare01/... ) |
649 |
Put data and eedata into repository ( verification/exp1 ) |
650 |
|
651 |
checkpoint2 |
652 |
Created by AJA |
653 |
Added GM/Redi |
654 |
|
655 |
checkpoint1 |
656 |
Created by AJA |
657 |
Restructured kloop in dynamics.F |
658 |
Added non-linear EOS |
659 |
|
660 |
baseline |
661 |
Original checked in code |