3 |
Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
4 |
============================== |
============================== |
5 |
|
|
6 |
|
Branch release1_50yr |
7 |
|
Code used for 50-year JPL telescoping integration. |
8 |
|
|
9 |
|
o merged with release1_p17 updates: |
10 |
|
modifications to pkg/seaice and verification/lab_sea |
11 |
|
added SEAICE_MULTILEVEL for 8-category sea-ice thermodynamics |
12 |
|
and pkg/seaice/lsr.F modifications |
13 |
|
|
14 |
|
o fixed gather/scatter inital MPI dialogue in ini_procs.F |
15 |
|
|
16 |
|
Branched off release1_p15 |
17 |
|
Modified pkg/exf/exf_clim_param.h, exf_clim_readparms.F, |
18 |
|
exf_set_climsss.F, and exf_set_climsst.F to add new_interp |
19 |
|
capability to SST and SSS |
20 |
|
Added verification/global_with_CFC11/code50yr and input50yr |
21 |
|
|
22 |
|
====================================================================== |
23 |
|
|
24 |
|
release1_p15 |
25 |
|
o Added CFC-11 diagnostics, see |
26 |
|
verification/global_with_CFC11/README |
27 |
|
|
28 |
|
release1_p14 |
29 |
|
o Added interpolation routine pkg/exf/new_interp.F for on-the-fly |
30 |
|
interpolation. Enable with USE_EXF_INTERPOLATION and specify |
31 |
|
input grids in data.exf |
32 |
|
o Added direct pressure solver pkg/solver. |
33 |
|
See pkg/solver/README.directSolver for instructions. |
34 |
|
|
35 |
|
release1_p13 |
36 |
|
o bug fix for pkg/seaice dynamic solver |
37 |
|
|
38 |
|
release1_p13_pre |
39 |
|
o Added net flux to downward flux conversion to pkg/exf/exf_getffields.F |
40 |
|
o Added SEAICE_initialHEFF to pkg/seaice |
41 |
|
o the_model_main.F: SEAICE_WRITE_PICKUP must precede WRITE_CHECKPOINT |
42 |
|
o Updated pkg/seaice and pkg/exf with adjoint modifications from icebear4 |
43 |
|
|
44 |
|
release1_p12 |
45 |
|
o Added missing /* */ to CPP comments in pkg/seaice, pkg/exf, |
46 |
|
kpp_transport_t.F, forward_step.F, and the_main_loop.F |
47 |
|
o pkg/seaice: |
48 |
|
- adjoint-friendly modifications |
49 |
|
- added a SEAICE_WRITE_PICKUP at end of the_model_main.F |
50 |
|
|
51 |
|
release1_p12_pre |
52 |
|
o Updated useSingleCpuIO option in mdsio_writefield.F to |
53 |
|
work with multi-field files, e.g., for single-file pickup. |
54 |
|
o pkg/seaice: |
55 |
|
- bug fix in growth.F: QNET for no shortwave case |
56 |
|
- added HeffFile for specifying initial sea-ice thickness |
57 |
|
- changed SEAICE_EXTERNAL_FLUXES wind stress implementation |
58 |
|
|
59 |
|
release1_p11 |
60 |
|
o Modifications for using pkg/exf with pkg/seaice |
61 |
|
- improved description of the various forcing configurations |
62 |
|
- added basic radiation bulk formulae to pkg/exf |
63 |
|
- units/sign fix for evap computation in exf_getffields.F |
64 |
|
- updated verification/global_with_exf/results/output.txt |
65 |
|
o Added pkg/sbo for computing IERS Special Bureau for the Oceans |
66 |
|
(SBO) core products, including oceanic mass, center-of-mass, |
67 |
|
angular, and bottom pressure (see pkg/sbo/README.sbo). |
68 |
|
o Lower bound for viscosity/diffusivity in pkg/kpp/kpp_routines.F |
69 |
|
to avoid negative values in shallow regions. |
70 |
|
- updated verification/natl_box/results/output.txt |
71 |
|
- updated verification/lab_sea/results/output.txt |
72 |
|
o MPI gather, scatter: eesupp/src/gather_2d.F and scatter_2d.F |
73 |
|
o Added useSingleCpuIO option (see PARAMS.h). |
74 |
|
|
75 |
|
release1_p10 |
76 |
|
o modifications for using pkg/exf with pkg/seaice |
77 |
|
- pkg/seaice CPP options SEAICE_EXTERNAL_FORCING |
78 |
|
and SEAICE_EXTERNAL_FLUXES |
79 |
|
- pkg/exf CPP options EXF_READ_EVAP and |
80 |
|
EXF_NO_BULK_COMPUTATIONS |
81 |
|
- usage examples are Experiments 8 and 9 in |
82 |
|
verification/lab_sea/README |
83 |
|
- verification/lab_sea default experiment now uses |
84 |
|
pkg/gmredi, pkg/kpp, pkg/seaice, and pkg/exf |
85 |
|
|
86 |
|
release1_p9 |
87 |
|
o pkg/seaice |
88 |
|
- removed GOTO's and added taf directives |
89 |
|
- double precision constants to reduce the g77 (Linux) |
90 |
|
to F77 (SGI) differences reported in release1_p8 |
91 |
|
o tools/genmake |
92 |
|
- added SGI options |
93 |
|
o verification/testscript |
94 |
|
- updated to that of checkpoint47a_post |
95 |
|
o verification/global_ocean.90x40x15/input/eedata |
96 |
|
- modified for SGI f77 compatibility |
97 |
|
o verification/lab_sea |
98 |
|
- added description of sea-ice model |
99 |
|
- added missing matlab routines |
100 |
|
- added test of thermodynamics parallelization |
101 |
|
|
102 |
|
release1_p8 |
103 |
|
o verification/natl_box: |
104 |
|
updating new external_fields_load routine |
105 |
|
o New package: pkg/seaice |
106 |
|
Sea ice model by D. Menemenlis (JPL) and Jinlun Zhang (Seattle). |
107 |
|
The sea-ice code is based on Hibler (1979-1980). |
108 |
|
Two sea-ice dynamic solvers, ADI and LSR, are included. |
109 |
|
In addition to computing prognostic sea-ice variables and diagnosing |
110 |
|
the forcing/external data fields that drive the ocean model, |
111 |
|
SEAICE_MODEL also sets theta to the freezing point under sea-ice. |
112 |
|
The implied surface heat flux is then stored in variable |
113 |
|
surfaceTendencyTice, which is needed by KPP package (kpp_calc.F and |
114 |
|
kpp_transport_t.F) to diagnose surface buoyancy fluxes and for the |
115 |
|
non-local transport term. Because this call precedes model |
116 |
|
thermodynamics, temperature under sea-ice may not be "exactly" at |
117 |
|
the freezing point by the time theta is dumped or time-averaged. |
118 |
|
N.B.: fairly large differences in accuracy occur across |
119 |
|
different platforms/compilers; comparison between |
120 |
|
g77 (Linux) and F77 (SGI Origin 2000/MIPSpro) |
121 |
|
generated output gives: |
122 |
|
T S U V |
123 |
|
C D M c m s m s m s m s |
124 |
|
n p a R g m m e . m m e . m m e . m m e . |
125 |
|
f n k u 2 i a a d i a a d i a a d i a a d |
126 |
|
g d e n d n x n . n x n . n x n . n x n . |
127 |
|
|
128 |
|
Y Y Y Y 5 5 7 7 7 8 10 9 6 6 6 6 7 5 7 5 7 FAIL lab_sea |
129 |
|
|
130 |
|
release1_p7 |
131 |
|
o GAD: |
132 |
|
- generated new common blocks to account for call of |
133 |
|
same gad routines with differing traceridentities |
134 |
|
(needed to modify tracerIdentity indices in GAD.h) |
135 |
|
- generated separate common blocks for case useCubedSphereExchange |
136 |
|
(Department of Futurology) |
137 |
|
- parameter lists to gmredi_?transport: added tracerIdentity |
138 |
|
- added new key indices to tamc.h |
139 |
|
o external_fields_load: |
140 |
|
- added this routine to TAF list |
141 |
|
- needed to make some common blocks global and additional storing |
142 |
|
along the same lines as exf package (checkpoint_lev?_directives.h) |
143 |
|
o exf: |
144 |
|
updated external forcing package |
145 |
|
- bug fixes carried over from ecco-branch |
146 |
|
(missing OBCS_OPTIONS.h in two routines) |
147 |
|
- enable easy to use "no forcing". |
148 |
|
- added exf I/O for atmospheric loading |
149 |
|
- added exf I/O for runoff data |
150 |
|
- transfered scaling between exf <-> MITgcm to exf namelist |
151 |
|
o Adding new verification experiment global_with_exf. |
152 |
|
This verification experiment is almost identical to the |
153 |
|
global_ocean.90x40x15 experiment, except that it uses |
154 |
|
the exf (and cal) package instead of the |
155 |
|
external_fields_load routine (cf README file). |
156 |
|
|
157 |
|
release1_p6 |
158 |
|
o fixed the verification/global_ocean.90x40x15 experiment: |
159 |
|
- new bathymetry (the world according to A., JMC, and M.) |
160 |
|
- new initial fields and forcing fields (*.bin files) |
161 |
|
- new POLY3.COEFFS (for the next release one should switch to a full |
162 |
|
equation of state) |
163 |
|
- fixed several errors and redundancies in the data file |
164 |
|
- experiment uses looped cells |
165 |
|
- added matlab directory with diagnostic scripts for plotting of output |
166 |
|
|
167 |
|
release1_p5 |
168 |
|
o import recent fix from MAIN branch: |
169 |
|
- use recip_dx*,recip_dy* instead of /dx*,/dy* in orlanski_E,W,N,S |
170 |
|
- change phiMin in exp1 (to agree with documentation) |
171 |
|
from checkpoint45 to checkpoint45a_post: |
172 |
|
- specific exchange for X-slice domain (case Ny=1) |
173 |
|
- argument futureIter of S/R obcs_calc missing in |
174 |
|
exp4 & internal_wave /code |
175 |
|
- solve_for_pressure : set cg2d_x to zero where OBCS are applied |
176 |
|
from checkpoint44f_post to checkpoint44g_post: |
177 |
|
- fix surface correction term in multiDimAdvection |
178 |
|
(affects plume_on_slope results |
179 |
|
o bug fix in packages_readparms (missing ALLOW_CALENDAR) |
180 |
|
o bug fix in CG2D.h (correct array size for LETS_MAKE_JAM |
181 |
|
o Adjoint-related bug fixes in kpp: |
182 |
|
- kpp_calc: sore of kpphbl avoids recomputation/call to S/R kppmix |
183 |
|
- kpp_routines: store of Rib avoids partial recomputation bug of TAF. |
184 |
|
o added Eliassen-Palm flux hooks (dynamics,ini_fields) |
185 |
|
o removed unused TAF keys iikey, idkey (dynamics,thermodynamics) |
186 |
|
o flow directives: |
187 |
|
- new for S/R do_the_model_io |
188 |
|
- enhanced for S/R checkpoint |
189 |
|
o added Eliassen Palm flux controls to gradient check package |
190 |
|
o new ctrl package |
191 |
|
- adopted from ECCO environment to enable optimization |
192 |
|
- added Eliassen Palm fluxes to controls |
193 |
|
- adjusted global_ocean.90x40x15/ and carbon/ accordingly |
194 |
|
|
195 |
|
release1_p4 |
196 |
|
o Removed f90 comments ("!") |
197 |
|
o Modified initialisations to enable exf package for MITgcm |
198 |
|
(without invoking ECCO_PACKAGE). |
199 |
|
o modifications to gradient check package (Martin Losch) |
200 |
|
- enable centered differences |
201 |
|
- modified format of standard output |
202 |
|
|
203 |
|
release1_p3 |
204 |
|
o added tangent linear setup to verification/carbon/ |
205 |
|
o added adjoint sensitivity setup to verification/global_ocean... |
206 |
|
o moved packages_init_variables before convective_adjustment |
207 |
|
o output of verif. which use GMRedi brought up-to-date with |
208 |
|
MAIN trunk (those were re-created after changes in GMRedi) |
209 |
|
o included CPP option SINGLE_LAYER_MODE |
210 |
|
to configure barotropic setup (Martin Losch). |
211 |
|
o Removed auxiliary variable in impldiff |
212 |
|
(caused numerical differences with MAIN trunk routine). |
213 |
|
o Introduced CPP option ALLOW_AUTODIFF_MONITOR to |
214 |
|
disable adcommon.h/g_common.h by default. |
215 |
|
o Cleaned exchange calls in cg2d. |
216 |
|
|
217 |
|
release1_p2 |
218 |
|
o fixed array boundary problem for adjoint |
219 |
|
(related to partial recomputation within subroutine |
220 |
|
related to dynamics -> calc_viscosity -> mom_... |
221 |
|
o fixed recomputation in thermodynamics |
222 |
|
o prepare (but not complete) recomputation problem in impldiff |
223 |
|
o fixed problem for adjoint of global_max |
224 |
|
o switched off sponge layer code in external_forcing |
225 |
|
|
226 |
|
release1_p1 |
227 |
|
o merged necessary patches: |
228 |
|
- AD-related changes for GMRedi |
229 |
|
- fixes i KPP (delZ -> drF) |
230 |
|
- hook to OBCS songe layer code in external_forcing |
231 |
|
- errorMessageUnit non-zero in eeboot.F |
232 |
|
- modified test cost function and carbon verif. |
233 |
|
|
234 |
|
release1_chkpt44d_post = chkpt44d_post |
235 |
|
|
236 |
|
chkpt44d_pre,post |
237 |
|
o added missing EXCLUDE_MONITOR flags |
238 |
|
o changed "e" to "_d" in gmredi_slope_limit, gmredi_slope_psi |
239 |
|
(incompatible typ in MIN/MAX expressions caused problems |
240 |
|
on IBM SP3) |
241 |
|
o in genmake added variable MAKEDEPEND |
242 |
|
plus resetting for case SunOS |
243 |
|
o added timer_stats.c routine for IBM SP3 |
244 |
|
o removed variables in dynamics |
245 |
|
|
246 |
|
o real fresh water flux implemented with non-linear free-surface. |
247 |
|
|
248 |
|
chkpt44c_pre,post |
249 |
|
o few fix (mask in shap_s2, EmPmR in external_field_load, |
250 |
|
USE_NATURAL_BCS in solve_for_P); |
251 |
|
o add arguments myIter & myTime to S/R obcs_calc & solve_for_P |
252 |
|
|
253 |
|
checkpoint44b_pre/_post |
254 |
|
o merge of relevant stuff from the ecco-branch: |
255 |
|
- genmake: removed $S64 overwrite for case SunOS |
256 |
|
- pkg/exf: update and corrections for field swapping and obcs |
257 |
|
- pkg/ecco: parameter lists for the_model_main, the_main_loop |
258 |
|
harmonized between ECCO and MITgcm |
259 |
|
- pkg/autodiff: added flow directives for obcs, mdsio_gl_slice |
260 |
|
updated checkpointing_lev... lists for obcs |
261 |
|
- model/src: minor changes in forward_step, plot_field |
262 |
|
added directive for divided adjoint in the_main_loop |
263 |
|
- pkg/mdsio: added mdsio_gl_slice |
264 |
|
|
265 |
|
o check parameters & config (chkpt44a_pre,post) |
266 |
|
o OBC and NonLin_FrSurf. |
267 |
|
|
268 |
|
checkpoint44 |
269 |
|
o fix bug in mom_vi_del2uv |
270 |
|
o select when filters are applied ; add options to zonal_filter (data.zonfilt) |
271 |
|
o gmredi: fix Pb in the adiabatic form ; add options (.e.g. Bolus advection) |
272 |
|
o update AIM experiments (NCEP input files) |
273 |
|
o improve and extend diagnostics (Monitor, TimeAve with NonLin-FrSurf) |
274 |
|
o added some stuff for AD |
275 |
|
|
276 |
|
checkpoint43 |
277 |
|
o added two new advection tests |
278 |
|
o added global 4x4 degree ocean test |
279 |
|
o added test of H&S94 with free surface on cube |
280 |
|
o some final mods for gradient check, adjoint,... |
281 |
|
|
282 |
|
checkpoint42 |
283 |
|
Fixed AD-related problems: |
284 |
|
o Store directives up-to-date with re-arranged Adams-Bashforth |
285 |
|
(mainly thermodynamics.F) |
286 |
|
o New store directives for multi-dim. advection schemes |
287 |
|
* new CPP flag ALLOW_MULTI_DIM_ADVECTION |
288 |
|
* new common block and key passkey |
289 |
|
(mainly gad_advection.F) |
290 |
|
o Modified store directives for split of dynamics/thermodynamics |
291 |
|
for the case ALLOW_KPP |
292 |
|
o Cleaned argument list for timestep_tracer.F |
293 |
|
|
294 |
|
checkpoint41 |
295 |
|
o re-formatted/added comments in prologues of key subroutines |
296 |
|
to work with protex |
297 |
|
|
298 |
checkpoint40 |
checkpoint40 |
299 |
o all changes of checkpoint40pre? |
o moved calc_gs, calc_gt and calc_tr1 back to model/src |
300 |
|
o added FLT (floats) package from Arne along with demo. experiment |
301 |
|
o re-arranged Adams-Bashforth scheme for tracers to allow easier |
302 |
|
implementation of forward-in-time forcing terms |
303 |
|
o more mods for non-linear free-surface including new variable |
304 |
|
o modified multi-dim method to work on cube |
305 |
|
o bug fix in KPP (from DM) |
306 |
|
|
307 |
|
checkpoint40pre9 |
308 |
|
o added DST advection schemes |
309 |
|
o fix MPI bug on SGI's |
310 |
|
o modifications for non-linear free-surface |
311 |
|
o fixed conditionals for fixed flow/passive tracer only mode |
312 |
|
o added tension/strain form of stress tensor |
313 |
|
o changes to commenting of arguments for TAF/TAMC |
314 |
|
o added/updated many matlab scripts |
315 |
|
o added multi-dimensional advection method for tracers |
316 |
|
|
317 |
|
checkpoint40pre8 |
318 |
o new package rw/ |
o new package rw/ |
319 |
Added method for dumping intermediate local arrays: |
Added method for dumping intermediate local arrays: |
320 |
mdsio_writetile - same as mdsio_writefield except works from inside |
mdsio_writetile - same as mdsio_writefield except works from inside |
701 |
|
|
702 |
baseline |
baseline |
703 |
Original checked in code |
Original checked in code |
|
|
|