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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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next patch: |
| 7 |
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o bug fix in packages_readparms (missing ALLOW_CALENDAR) |
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o bug fix in CG2D.h (correct array size for LETS_MAKE_JAM |
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o Adjoint-related bug fixes in kpp: |
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- kpp_calc: sore of kpphbl avoids recomputation/call to S/R kppmix |
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- kpp_routines: store of Rib avoids partial recomputation bug of TAF. |
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o added Eliassen-Palm flux hooks (dynamics,ini_fields) |
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o removed unused TAF keys iikey, idkey (dynamics,thermodynamics) |
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o flow directives: |
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- new for S/R do_the_model_io |
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- enhanced for S/R checkpoint |
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o added E-P fluxes to gradient check package |
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release1_p4 |
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o Removed f90 comments ("!") |
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o Modified initialisations to enable exf package for MITgcm |
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(without invoking ECCO_PACKAGE). |
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o modifications to gradient check package (Martin Losch) |
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- enable centered differences |
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- modified format of standard output |
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release1_p3 |
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o added tangent linear setup to verification/carbon/ |
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o added adjoint sensitivity setup to verification/global_ocean... |
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o moved packages_init_variables before convective_adjustment |
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o output of verif. which use GMRedi brought up-to-date with |
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MAIN trunk (those were re-created after changes in GMRedi) |
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o included CPP option SINGLE_LAYER_MODE |
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to configure barotropic setup (Martin Losch). |
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o Removed auxiliary variable in impldiff |
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(caused numerical differences with MAIN trunk routine). |
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o Introduced CPP option ALLOW_AUTODIFF_MONITOR to |
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disable adcommon.h/g_common.h by default. |
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o Cleaned exchange calls in cg2d. |
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release1_p2 |
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o fixed array boundary problem for adjoint |
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(related to partial recomputation within subroutine |
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related to dynamics -> calc_viscosity -> mom_... |
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o fixed recomputation in thermodynamics |
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o prepare (but not complete) recomputation problem in impldiff |
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o fixed problem for adjoint of global_max |
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o switched off sponge layer code in external_forcing |
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release1_p1 |
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o merged necessary patches: |
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- AD-related changes for GMRedi |
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- fixes i KPP (delZ -> drF) |
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- hook to OBCS songe layer code in external_forcing |
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- errorMessageUnit non-zero in eeboot.F |
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- modified test cost function and carbon verif. |
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release1_chkpt44d_post = chkpt44d_post |
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chkpt44d_pre,post |
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o added missing EXCLUDE_MONITOR flags |
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o changed "e" to "_d" in gmredi_slope_limit, gmredi_slope_psi |
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(incompatible typ in MIN/MAX expressions caused problems |
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on IBM SP3) |
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o in genmake added variable MAKEDEPEND |
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plus resetting for case SunOS |
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o added timer_stats.c routine for IBM SP3 |
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o removed variables in dynamics |
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o real fresh water flux implemented with non-linear free-surface. |
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chkpt44c_pre,post |
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o few fix (mask in shap_s2, EmPmR in external_field_load, |
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USE_NATURAL_BCS in solve_for_P); |
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o add arguments myIter & myTime to S/R obcs_calc & solve_for_P |
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checkpoint44b_pre/_post |
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o merge of relevant stuff from the ecco-branch: |
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- genmake: removed $S64 overwrite for case SunOS |
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- pkg/exf: update and corrections for field swapping and obcs |
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- pkg/ecco: parameter lists for the_model_main, the_main_loop |
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harmonized between ECCO and MITgcm |
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- pkg/autodiff: added flow directives for obcs, mdsio_gl_slice |
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updated checkpointing_lev... lists for obcs |
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- model/src: minor changes in forward_step, plot_field |
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added directive for divided adjoint in the_main_loop |
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- pkg/mdsio: added mdsio_gl_slice |
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o check parameters & config (chkpt44a_pre,post) |
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o OBC and NonLin_FrSurf. |
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checkpoint44 |
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o fix bug in mom_vi_del2uv |
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o select when filters are applied ; add options to zonal_filter (data.zonfilt) |
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o gmredi: fix Pb in the adiabatic form ; add options (.e.g. Bolus advection) |
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o update AIM experiments (NCEP input files) |
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o improve and extend diagnostics (Monitor, TimeAve with NonLin-FrSurf) |
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o added some stuff for AD |
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checkpoint43 |
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o added two new advection tests |
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o added global 4x4 degree ocean test |
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o added test of H&S94 with free surface on cube |
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o some final mods for gradient check, adjoint,... |
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checkpoint42 |
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Fixed AD-related problems: |
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o Store directives up-to-date with re-arranged Adams-Bashforth |
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(mainly thermodynamics.F) |
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o New store directives for multi-dim. advection schemes |
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* new CPP flag ALLOW_MULTI_DIM_ADVECTION |
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* new common block and key passkey |
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(mainly gad_advection.F) |
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o Modified store directives for split of dynamics/thermodynamics |
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for the case ALLOW_KPP |
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o Cleaned argument list for timestep_tracer.F |
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checkpoint41 |
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o re-formatted/added comments in prologues of key subroutines |
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to work with protex |
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checkpoint40 |
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o moved calc_gs, calc_gt and calc_tr1 back to model/src |
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o added FLT (floats) package from Arne along with demo. experiment |
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o re-arranged Adams-Bashforth scheme for tracers to allow easier |
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implementation of forward-in-time forcing terms |
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o more mods for non-linear free-surface including new variable |
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o modified multi-dim method to work on cube |
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o bug fix in KPP (from DM) |
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checkpoint40pre9 |
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o added DST advection schemes |
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o fix MPI bug on SGI's |
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o modifications for non-linear free-surface |
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o fixed conditionals for fixed flow/passive tracer only mode |
| 136 |
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o added tension/strain form of stress tensor |
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o changes to commenting of arguments for TAF/TAMC |
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o added/updated many matlab scripts |
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o added multi-dimensional advection method for tracers |
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checkpoint40pre8 |
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o new package rw/ |
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Added method for dumping intermediate local arrays: |
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mdsio_writetile - same as mdsio_writefield except works from inside |
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bi,bj loop |
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mdsio_writelocal - same as mdsio_writetile except works for local |
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arrays |
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write_local_r? - higher-level wrapper for mdsio_writelocal |
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Controlled by diagFreq. Defaults to zero (ie. no dumps) |
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Example given at end of mom_vecinv.F that dumps some local arrays. |
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o replaced calc_mom_rhs.F by mom_fluxform.F/mom_vecinc.F to |
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control flux-form versus vector invariant code. |
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Switch is runtime flag vectorInvariantMomentum (defaults to false) |
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or genmake -DISABLE ... |
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o TAMC-related update to cope with mom_fluxform.F/mom_vecinc.F |
| 156 |
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(additional storing is now needed for case vecinv; |
| 157 |
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currently nothing implemented to switch this storing off |
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in case fluxform is used since no CPP flag available). |
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checkpoint40pre7 |
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o bug fix in dynamics.F |
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calc_viscosity called before k=1,Nr loop. |
| 163 |
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o added some #ifdef's ALLOW_PASSIVE_TRACER |
| 164 |
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o cleaned initialisations in ctrl_map_ini |
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related to TAF |
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checkpoint40pre6 |
checkpoint40pre6 |
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o split dynamics into thermodynamics & dynamics |
o split dynamics into thermodynamics & dynamics |
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o corresponding split of calc_diffusivity into |
o corresponding split of calc_diffusivity into |
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