3 |
Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
4 |
============================== |
============================== |
5 |
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|
6 |
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o adjoint-friendly modifications to pkg/seaice |
7 |
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|
8 |
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release1_p17 |
9 |
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o added SEAICE_MULTILEVEL for 8-category sea-ice thermodynamics |
10 |
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|
11 |
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release1_p16 |
12 |
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o fixed gather/scatter inital MPI dialogue in ini_procs.F |
13 |
|
o pkg/seaice/lsr.F has been moved to SouthWest B-grid location |
14 |
|
and has been made the default dynamic solver because of its |
15 |
|
fast convergence properties relative to adi.F solver. |
16 |
|
|
17 |
|
release1_p15 |
18 |
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o Added CFC-11 diagnostics, see |
19 |
|
verification/global_with_CFC11/README |
20 |
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|
21 |
|
release1_p14 |
22 |
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o Added interpolation routine pkg/exf/new_interp.F for on-the-fly |
23 |
|
interpolation. Enable with USE_EXF_INTERPOLATION and specify |
24 |
|
input grids in data.exf |
25 |
|
o Added direct pressure solver pkg/solver. |
26 |
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See pkg/solver/README.directSolver for instructions. |
27 |
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|
28 |
|
release1_p13 |
29 |
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o bug fix for pkg/seaice/adi.F dynamic solver |
30 |
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|
31 |
|
release1_p13_pre |
32 |
|
o Added net flux to downward flux conversion to pkg/exf/exf_getffields.F |
33 |
|
o Added SEAICE_initialHEFF to pkg/seaice |
34 |
|
o the_model_main.F: SEAICE_WRITE_PICKUP must precede WRITE_CHECKPOINT |
35 |
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o Updated pkg/seaice and pkg/exf with adjoint modifications from icebear4 |
36 |
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|
37 |
|
release1_p12 |
38 |
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o Added missing /* */ to CPP comments in pkg/seaice, pkg/exf, |
39 |
|
kpp_transport_t.F, forward_step.F, and the_main_loop.F |
40 |
|
o pkg/seaice: |
41 |
|
- adjoint-friendly modifications |
42 |
|
- added a SEAICE_WRITE_PICKUP at end of the_model_main.F |
43 |
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|
44 |
|
release1_p12_pre |
45 |
|
o Updated useSingleCpuIO option in mdsio_writefield.F to |
46 |
|
work with multi-field files, e.g., for single-file pickup. |
47 |
|
o pkg/seaice: |
48 |
|
- bug fix in growth.F: QNET for no shortwave case |
49 |
|
- added HeffFile for specifying initial sea-ice thickness |
50 |
|
- changed SEAICE_EXTERNAL_FLUXES wind stress implementation |
51 |
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|
52 |
|
release1_p11 |
53 |
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o Modifications for using pkg/exf with pkg/seaice |
54 |
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- improved description of the various forcing configurations |
55 |
|
- added basic radiation bulk formulae to pkg/exf |
56 |
|
- units/sign fix for evap computation in exf_getffields.F |
57 |
|
- updated verification/global_with_exf/results/output.txt |
58 |
|
o Added pkg/sbo for computing IERS Special Bureau for the Oceans |
59 |
|
(SBO) core products, including oceanic mass, center-of-mass, |
60 |
|
angular, and bottom pressure (see pkg/sbo/README.sbo). |
61 |
|
o Lower bound for viscosity/diffusivity in pkg/kpp/kpp_routines.F |
62 |
|
to avoid negative values in shallow regions. |
63 |
|
- updated verification/natl_box/results/output.txt |
64 |
|
- updated verification/lab_sea/results/output.txt |
65 |
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o MPI gather, scatter: eesupp/src/gather_2d.F and scatter_2d.F |
66 |
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o Added useSingleCpuIO option (see PARAMS.h). |
67 |
|
|
68 |
|
release1_p10 |
69 |
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o modifications for using pkg/exf with pkg/seaice |
70 |
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- pkg/seaice CPP options SEAICE_EXTERNAL_FORCING |
71 |
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and SEAICE_EXTERNAL_FLUXES |
72 |
|
- pkg/exf CPP options EXF_READ_EVAP and |
73 |
|
EXF_NO_BULK_COMPUTATIONS |
74 |
|
- usage examples are Experiments 8 and 9 in |
75 |
|
verification/lab_sea/README |
76 |
|
- verification/lab_sea default experiment now uses |
77 |
|
pkg/gmredi, pkg/kpp, pkg/seaice, and pkg/exf |
78 |
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|
79 |
|
release1_p9 |
80 |
|
o pkg/seaice |
81 |
|
- removed GOTO's and added taf directives |
82 |
|
- double precision constants to reduce the g77 (Linux) |
83 |
|
to F77 (SGI) differences reported in release1_p8 |
84 |
|
o tools/genmake |
85 |
|
- added SGI options |
86 |
|
o verification/testscript |
87 |
|
- updated to that of checkpoint47a_post |
88 |
|
o verification/global_ocean.90x40x15/input/eedata |
89 |
|
- modified for SGI f77 compatibility |
90 |
|
o verification/lab_sea |
91 |
|
- added description of sea-ice model |
92 |
|
- added missing matlab routines |
93 |
|
- added test of thermodynamics parallelization |
94 |
|
|
95 |
|
release1_p8 |
96 |
|
o verification/natl_box: |
97 |
|
updating new external_fields_load routine |
98 |
|
o New package: pkg/seaice |
99 |
|
Sea ice model by D. Menemenlis (JPL) and Jinlun Zhang (Seattle). |
100 |
|
The sea-ice code is based on Hibler (1979-1980). |
101 |
|
Two sea-ice dynamic solvers, ADI and LSR, are included. |
102 |
|
In addition to computing prognostic sea-ice variables and diagnosing |
103 |
|
the forcing/external data fields that drive the ocean model, |
104 |
|
SEAICE_MODEL also sets theta to the freezing point under sea-ice. |
105 |
|
The implied surface heat flux is then stored in variable |
106 |
|
surfaceTendencyTice, which is needed by KPP package (kpp_calc.F and |
107 |
|
kpp_transport_t.F) to diagnose surface buoyancy fluxes and for the |
108 |
|
non-local transport term. Because this call precedes model |
109 |
|
thermodynamics, temperature under sea-ice may not be "exactly" at |
110 |
|
the freezing point by the time theta is dumped or time-averaged. |
111 |
|
N.B.: fairly large differences in accuracy occur across |
112 |
|
different platforms/compilers; comparison between |
113 |
|
g77 (Linux) and F77 (SGI Origin 2000/MIPSpro) |
114 |
|
generated output gives: |
115 |
|
T S U V |
116 |
|
C D M c m s m s m s m s |
117 |
|
n p a R g m m e . m m e . m m e . m m e . |
118 |
|
f n k u 2 i a a d i a a d i a a d i a a d |
119 |
|
g d e n d n x n . n x n . n x n . n x n . |
120 |
|
|
121 |
|
Y Y Y Y 5 5 7 7 7 8 10 9 6 6 6 6 7 5 7 5 7 FAIL lab_sea |
122 |
|
|
123 |
|
release1_p7 |
124 |
|
o GAD: |
125 |
|
- generated new common blocks to account for call of |
126 |
|
same gad routines with differing traceridentities |
127 |
|
(needed to modify tracerIdentity indices in GAD.h) |
128 |
|
- generated separate common blocks for case useCubedSphereExchange |
129 |
|
(Department of Futurology) |
130 |
|
- parameter lists to gmredi_?transport: added tracerIdentity |
131 |
|
- added new key indices to tamc.h |
132 |
|
o external_fields_load: |
133 |
|
- added this routine to TAF list |
134 |
|
- needed to make some common blocks global and additional storing |
135 |
|
along the same lines as exf package (checkpoint_lev?_directives.h) |
136 |
|
o exf: |
137 |
|
updated external forcing package |
138 |
|
- bug fixes carried over from ecco-branch |
139 |
|
(missing OBCS_OPTIONS.h in two routines) |
140 |
|
- enable easy to use "no forcing". |
141 |
|
- added exf I/O for atmospheric loading |
142 |
|
- added exf I/O for runoff data |
143 |
|
- transfered scaling between exf <-> MITgcm to exf namelist |
144 |
|
o Adding new verification experiment global_with_exf. |
145 |
|
This verification experiment is almost identical to the |
146 |
|
global_ocean.90x40x15 experiment, except that it uses |
147 |
|
the exf (and cal) package instead of the |
148 |
|
external_fields_load routine (cf README file). |
149 |
|
|
150 |
|
release1_p6 |
151 |
|
o fixed the verification/global_ocean.90x40x15 experiment: |
152 |
|
- new bathymetry (the world according to A., JMC, and M.) |
153 |
|
- new initial fields and forcing fields (*.bin files) |
154 |
|
- new POLY3.COEFFS (for the next release one should switch to a full |
155 |
|
equation of state) |
156 |
|
- fixed several errors and redundancies in the data file |
157 |
|
- experiment uses looped cells |
158 |
|
- added matlab directory with diagnostic scripts for plotting of output |
159 |
|
|
160 |
|
release1_p5 |
161 |
|
o import recent fix from MAIN branch: |
162 |
|
- use recip_dx*,recip_dy* instead of /dx*,/dy* in orlanski_E,W,N,S |
163 |
|
- change phiMin in exp1 (to agree with documentation) |
164 |
|
from checkpoint45 to checkpoint45a_post: |
165 |
|
- specific exchange for X-slice domain (case Ny=1) |
166 |
|
- argument futureIter of S/R obcs_calc missing in |
167 |
|
exp4 & internal_wave /code |
168 |
|
- solve_for_pressure : set cg2d_x to zero where OBCS are applied |
169 |
|
from checkpoint44f_post to checkpoint44g_post: |
170 |
|
- fix surface correction term in multiDimAdvection |
171 |
|
(affects plume_on_slope results |
172 |
|
o bug fix in packages_readparms (missing ALLOW_CALENDAR) |
173 |
|
o bug fix in CG2D.h (correct array size for LETS_MAKE_JAM |
174 |
|
o Adjoint-related bug fixes in kpp: |
175 |
|
- kpp_calc: sore of kpphbl avoids recomputation/call to S/R kppmix |
176 |
|
- kpp_routines: store of Rib avoids partial recomputation bug of TAF. |
177 |
|
o added Eliassen-Palm flux hooks (dynamics,ini_fields) |
178 |
|
o removed unused TAF keys iikey, idkey (dynamics,thermodynamics) |
179 |
|
o flow directives: |
180 |
|
- new for S/R do_the_model_io |
181 |
|
- enhanced for S/R checkpoint |
182 |
|
o added Eliassen Palm flux controls to gradient check package |
183 |
|
o new ctrl package |
184 |
|
- adopted from ECCO environment to enable optimization |
185 |
|
- added Eliassen Palm fluxes to controls |
186 |
|
- adjusted global_ocean.90x40x15/ and carbon/ accordingly |
187 |
|
|
188 |
|
release1_p4 |
189 |
|
o Removed f90 comments ("!") |
190 |
|
o Modified initialisations to enable exf package for MITgcm |
191 |
|
(without invoking ECCO_PACKAGE). |
192 |
|
o modifications to gradient check package (Martin Losch) |
193 |
|
- enable centered differences |
194 |
|
- modified format of standard output |
195 |
|
|
196 |
|
release1_p3 |
197 |
|
o added tangent linear setup to verification/carbon/ |
198 |
|
o added adjoint sensitivity setup to verification/global_ocean... |
199 |
|
o moved packages_init_variables before convective_adjustment |
200 |
|
o output of verif. which use GMRedi brought up-to-date with |
201 |
|
MAIN trunk (those were re-created after changes in GMRedi) |
202 |
|
o included CPP option SINGLE_LAYER_MODE |
203 |
|
to configure barotropic setup (Martin Losch). |
204 |
|
o Removed auxiliary variable in impldiff |
205 |
|
(caused numerical differences with MAIN trunk routine). |
206 |
|
o Introduced CPP option ALLOW_AUTODIFF_MONITOR to |
207 |
|
disable adcommon.h/g_common.h by default. |
208 |
|
o Cleaned exchange calls in cg2d. |
209 |
|
|
210 |
|
release1_p2 |
211 |
|
o fixed array boundary problem for adjoint |
212 |
|
(related to partial recomputation within subroutine |
213 |
|
related to dynamics -> calc_viscosity -> mom_... |
214 |
|
o fixed recomputation in thermodynamics |
215 |
|
o prepare (but not complete) recomputation problem in impldiff |
216 |
|
o fixed problem for adjoint of global_max |
217 |
|
o switched off sponge layer code in external_forcing |
218 |
|
|
219 |
|
release1_p1 |
220 |
|
o merged necessary patches: |
221 |
|
- AD-related changes for GMRedi |
222 |
|
- fixes i KPP (delZ -> drF) |
223 |
|
- hook to OBCS songe layer code in external_forcing |
224 |
|
- errorMessageUnit non-zero in eeboot.F |
225 |
|
- modified test cost function and carbon verif. |
226 |
|
|
227 |
|
release1_chkpt44d_post = chkpt44d_post |
228 |
|
|
229 |
|
chkpt44d_pre,post |
230 |
|
o added missing EXCLUDE_MONITOR flags |
231 |
|
o changed "e" to "_d" in gmredi_slope_limit, gmredi_slope_psi |
232 |
|
(incompatible typ in MIN/MAX expressions caused problems |
233 |
|
on IBM SP3) |
234 |
|
o in genmake added variable MAKEDEPEND |
235 |
|
plus resetting for case SunOS |
236 |
|
o added timer_stats.c routine for IBM SP3 |
237 |
|
o removed variables in dynamics |
238 |
|
|
239 |
|
o real fresh water flux implemented with non-linear free-surface. |
240 |
|
|
241 |
|
chkpt44c_pre,post |
242 |
|
o few fix (mask in shap_s2, EmPmR in external_field_load, |
243 |
|
USE_NATURAL_BCS in solve_for_P); |
244 |
|
o add arguments myIter & myTime to S/R obcs_calc & solve_for_P |
245 |
|
|
246 |
|
checkpoint44b_pre/_post |
247 |
|
o merge of relevant stuff from the ecco-branch: |
248 |
|
- genmake: removed $S64 overwrite for case SunOS |
249 |
|
- pkg/exf: update and corrections for field swapping and obcs |
250 |
|
- pkg/ecco: parameter lists for the_model_main, the_main_loop |
251 |
|
harmonized between ECCO and MITgcm |
252 |
|
- pkg/autodiff: added flow directives for obcs, mdsio_gl_slice |
253 |
|
updated checkpointing_lev... lists for obcs |
254 |
|
- model/src: minor changes in forward_step, plot_field |
255 |
|
added directive for divided adjoint in the_main_loop |
256 |
|
- pkg/mdsio: added mdsio_gl_slice |
257 |
|
|
258 |
|
o check parameters & config (chkpt44a_pre,post) |
259 |
|
o OBC and NonLin_FrSurf. |
260 |
|
|
261 |
|
checkpoint44 |
262 |
|
o fix bug in mom_vi_del2uv |
263 |
|
o select when filters are applied ; add options to zonal_filter (data.zonfilt) |
264 |
|
o gmredi: fix Pb in the adiabatic form ; add options (.e.g. Bolus advection) |
265 |
|
o update AIM experiments (NCEP input files) |
266 |
|
o improve and extend diagnostics (Monitor, TimeAve with NonLin-FrSurf) |
267 |
|
o added some stuff for AD |
268 |
|
|
269 |
|
checkpoint43 |
270 |
|
o added two new advection tests |
271 |
|
o added global 4x4 degree ocean test |
272 |
|
o added test of H&S94 with free surface on cube |
273 |
|
o some final mods for gradient check, adjoint,... |
274 |
|
|
275 |
|
checkpoint42 |
276 |
|
Fixed AD-related problems: |
277 |
|
o Store directives up-to-date with re-arranged Adams-Bashforth |
278 |
|
(mainly thermodynamics.F) |
279 |
|
o New store directives for multi-dim. advection schemes |
280 |
|
* new CPP flag ALLOW_MULTI_DIM_ADVECTION |
281 |
|
* new common block and key passkey |
282 |
|
(mainly gad_advection.F) |
283 |
|
o Modified store directives for split of dynamics/thermodynamics |
284 |
|
for the case ALLOW_KPP |
285 |
|
o Cleaned argument list for timestep_tracer.F |
286 |
|
|
287 |
|
checkpoint41 |
288 |
|
o re-formatted/added comments in prologues of key subroutines |
289 |
|
to work with protex |
290 |
|
|
291 |
|
checkpoint40 |
292 |
|
o moved calc_gs, calc_gt and calc_tr1 back to model/src |
293 |
|
o added FLT (floats) package from Arne along with demo. experiment |
294 |
|
o re-arranged Adams-Bashforth scheme for tracers to allow easier |
295 |
|
implementation of forward-in-time forcing terms |
296 |
|
o more mods for non-linear free-surface including new variable |
297 |
|
o modified multi-dim method to work on cube |
298 |
|
o bug fix in KPP (from DM) |
299 |
|
|
300 |
|
checkpoint40pre9 |
301 |
|
o added DST advection schemes |
302 |
|
o fix MPI bug on SGI's |
303 |
|
o modifications for non-linear free-surface |
304 |
|
o fixed conditionals for fixed flow/passive tracer only mode |
305 |
|
o added tension/strain form of stress tensor |
306 |
|
o changes to commenting of arguments for TAF/TAMC |
307 |
|
o added/updated many matlab scripts |
308 |
|
o added multi-dimensional advection method for tracers |
309 |
|
|
310 |
|
checkpoint40pre8 |
311 |
|
o new package rw/ |
312 |
|
Added method for dumping intermediate local arrays: |
313 |
|
mdsio_writetile - same as mdsio_writefield except works from inside |
314 |
|
bi,bj loop |
315 |
|
mdsio_writelocal - same as mdsio_writetile except works for local |
316 |
|
arrays |
317 |
|
write_local_r? - higher-level wrapper for mdsio_writelocal |
318 |
|
Controlled by diagFreq. Defaults to zero (ie. no dumps) |
319 |
|
Example given at end of mom_vecinv.F that dumps some local arrays. |
320 |
|
o replaced calc_mom_rhs.F by mom_fluxform.F/mom_vecinc.F to |
321 |
|
control flux-form versus vector invariant code. |
322 |
|
Switch is runtime flag vectorInvariantMomentum (defaults to false) |
323 |
|
or genmake -DISABLE ... |
324 |
|
o TAMC-related update to cope with mom_fluxform.F/mom_vecinc.F |
325 |
|
(additional storing is now needed for case vecinv; |
326 |
|
currently nothing implemented to switch this storing off |
327 |
|
in case fluxform is used since no CPP flag available). |
328 |
|
|
329 |
|
checkpoint40pre7 |
330 |
|
o bug fix in dynamics.F |
331 |
|
calc_viscosity called before k=1,Nr loop. |
332 |
|
o added some #ifdef's ALLOW_PASSIVE_TRACER |
333 |
|
o cleaned initialisations in ctrl_map_ini |
334 |
|
related to TAF |
335 |
|
|
336 |
|
checkpoint40pre6 |
337 |
|
o split dynamics into thermodynamics & dynamics |
338 |
|
o corresponding split of calc_diffusivity into |
339 |
|
calc_diffusivity, calc_viscosity |
340 |
|
(kpp_calc_diff, kpp_calc_visc). |
341 |
|
o Added diffkr, kapgm to control variables |
342 |
|
o bug fix in gmredi_slope_limit for ldd97 |
343 |
|
|
344 |
|
checkpoint40pre5 |
345 |
|
o proper initialization of Adams-Bashforth time stepping |
346 |
|
+ uses forward step for very first step of model (iter=0) |
347 |
|
o re-generated *all* output since almost all output is modified by this |
348 |
|
change (sorry but we've been putting this one off for about 2 years) |
349 |
|
+ natl_box, aim.5l_Equatorial_Channel and aim.5l_zon-ave were |
350 |
|
*not* regenerated since they are already out of date and I don't |
351 |
|
want to create the impression that they are suddenly working. |
352 |
|
o removed KAP stuff for DEC's |
353 |
|
o modified/added many .cvsignore files in */code and */input |
354 |
|
o added new expt "solid-body.cs-32x32x1" |
355 |
|
+ this uses an alternative form of ini_curvilinear_grid.F which |
356 |
|
is not necessarily any better than the current one... |
357 |
|
|
358 |
|
checkpoint40pre4 |
359 |
|
o added re-initialisations of utrans,vtrans,rtrans in |
360 |
|
calc_common_factors which are crucial for TAF. |
361 |
|
o extended iMin,jMin range for calc_common_factors, |
362 |
|
calc_diffusivity |
363 |
|
o added option ALLOW_PASSIVE_TRACER |
364 |
|
o a few minor updates and fixes |
365 |
|
|
366 |
|
checkpoint40pre3 |
367 |
|
o created calc_gtr1.F for gad package |
368 |
|
o split the_main_loop and re-introduced forward_step |
369 |
|
o some recomputations of nIter0 for TAMC |
370 |
|
|
371 |
|
checkpoint40pre2 |
372 |
|
o Updated to latest branch of AJA, JMC |
373 |
|
o Added gradient check package |
374 |
|
o Added routines for passive tracer handling |
375 |
|
o Added carbon sequestration sensitivity experiment |
376 |
|
|
377 |
|
checkpoint39 |
378 |
|
o Modifications and fixes to support TAMC |
379 |
|
(mainly missing or wrong directives) |
380 |
|
o Corrected common blocks when fooling TAMC to produce adjoint I/O |
381 |
|
in addummy_in_stepping |
382 |
|
o Updated verification/vero/ (bug fixes in code/, correct pickups in input/) |
383 |
|
o Enabled "sliced" (xz-,yz-) exchanges, needed for obcs. |
384 |
|
o Included following packages: |
385 |
|
cal: calendar |
386 |
|
exf: external forcing |
387 |
|
ecco: essential routines to control use of cal, exf |
388 |
|
(NB: this is not the full ECCO environment) |
389 |
|
o disabled some packages by default in genmake |
390 |
|
|
391 |
|
checkpoint38 |
392 |
|
o see notes_c37_adj.txt |
393 |
|
o corrected wrong layer index in external_forcing_t |
394 |
|
o replaced the_main_loop/forward_step by the_main_loop |
395 |
|
o removed forceoutput from write_state |
396 |
|
(replaced criteria for initial/final state) |
397 |
|
o added runtime flag for pre-C35 pickups: usePickupBeforeC35 |
398 |
|
|
399 |
|
checkpoint37 |
400 |
|
o mdsio.F routine split and packaged in pkg/mdsio |
401 |
|
(mdsio.F and mdsio_gl.F still exist in eesupp/src but are not |
402 |
|
used unless genmake -disable=mdsio) |
403 |
|
o allow a more precise surface-geopotential gradient for the atmosphere |
404 |
|
taking into account the change in space of Alpha (=1/rho) at the surface. |
405 |
|
o variable "etaN" (replace cg2d_x) is the surface R-anomaly [r unit] |
406 |
|
(ocean: sea surface height [m] / atmos: surface pressure anomaly [Pa]) |
407 |
|
o Change units: Phi_Hydrostatic (=phiHyd), Phi_Surface(=cg2d_x) and |
408 |
|
Phi_NonHydrostatic (=cg3d_x), all have now the dimension of a potential |
409 |
|
[m2/s2] (pressure/rhoConst in the ocean ; Geo-Potential in the atmosphere). |
410 |
|
o Time-Average diagnostics defined as a pseudo package "timeave". |
411 |
|
o pickup files : old pickup (before c35) did not work with new code (c35 |
412 |
|
and after) unless activating 2 commented lines in initialise-varia. |
413 |
|
o Non-Hydrostatic pickup file Pb fixed. |
414 |
|
o bug with Rigid-lid version (since c35) fixed. |
415 |
|
|
416 |
|
checkpoint36 |
417 |
|
o implement Crank-Nickelson barotropic time-stepping |
418 |
|
o recover Time-Average diagnostics |
419 |
|
o fix Pb in checkpoint (PR#19) |
420 |
|
o AIM become a standard package ; clean unused CPP_kees |
421 |
|
|
422 |
|
checkpoint35 |
423 |
|
o subtantial rewrite of dynamics.f |
424 |
|
o allows staggered time-stepping |
425 |
|
o packaged obcs, aim (Atmospheric Physics), zonal_filt, shap_filt |
426 |
|
o added bottom drag (linear + quadratic) |
427 |
|
|
428 |
|
checkpoint34 |
429 |
|
o Modified exchange routines for correct reverse simulation. |
430 |
|
o Added verification output to comply with bug fix in impldiff.F |
431 |
|
as of c33 (exp2, natl_box). |
432 |
|
o Corrected store directives in dynamics.F |
433 |
|
o Corrected array boundaries in impldiff.F |
434 |
|
o Corrected array dimensions in gmredi. |
435 |
|
Added temporary scalars to avoid storage by TAMC (gmredi, kpp). |
436 |
|
o Added routine GLOBAL_SUM_INT to global_sum.F |
437 |
|
o Added mdsio_gl.F for ECCO purposes. |
438 |
|
|
439 |
|
checkpoint33 |
440 |
|
o Fixed bug in lower BC in impldiff.F |
441 |
|
o Fixed confusion about units of forcing arrays in FFIELDS.h |
442 |
|
namely Fu,Fv,Qnet,Qsw,EmPmR: |
443 |
|
- Removed verification/natl_box/code/external_fields_scale.F |
444 |
|
(did not differ from that in model/src) |
445 |
|
- Changed units of fu,fv,Qnet,Qsw,EmPmR back to proper units |
446 |
|
(see FFIELDS.h for description) |
447 |
|
- Scale fu,fv,Qnet,Qsw,EmPmR when used in external_forcing_surf.F, |
448 |
|
kpp_calc.F and kpp_transport_t.F |
449 |
|
- Removed model/src/external_fields_scale.F and calls to it |
450 |
|
- verification/natl_box uses flux data with "atmospheric" sign so |
451 |
|
a special version of external_fields_load.F is used to |
452 |
|
change the data as it's read in. This way, the arrays |
453 |
|
have the right units and signs at all times tha a user could |
454 |
|
possibly use them. |
455 |
|
o Corrected genmake to delete a temporary file during configuration |
456 |
|
|
457 |
|
checkpoint32 |
458 |
|
o Scaling of forcing fields moved from external_forcing.F to |
459 |
|
external_fields_scale.F, called directly after loading fields. |
460 |
|
o Surface relaxation terms added to surface tendency fields in |
461 |
|
extra subroutine. |
462 |
|
o impldiff.F changed to avoid storing by TAMC of huge intermediate |
463 |
|
fields. |
464 |
|
o Changes in GMRedi to comply with packaging structure. |
465 |
|
o Modifications and bug fixes in KPP package. |
466 |
|
o Verification experiment for KPP added (verification/nat_box/) |
467 |
|
|
468 |
|
checkpoint31 |
469 |
|
o Packages interface brought in line with defined standard |
470 |
|
-> new routines packages_...F |
471 |
|
-> changes in initialise_fixed.F, initialise_varia.F |
472 |
|
-> enables initialisation interface for ECCO package |
473 |
|
o Rescaling of external forcing fields immediately after read |
474 |
|
(removed from external_forcing.F) |
475 |
|
-> new: surface_fields_scale.F |
476 |
|
-> affects ini_foorcing.F, external_fields_load.F |
477 |
|
o Computation of surface tendencies before tendency updates. |
478 |
|
-> new: external_forcing_surf.F |
479 |
|
o Change of variable names useGMRedi, useKPP, useECCO |
480 |
|
o Further changes in dynamics.F, impldiff.F for TAMC |
481 |
|
o Tested for experiments 0, 2, 4. |
482 |
|
- not yet tested for GMRedi. |
483 |
|
- not yet tested for KPP. |
484 |
|
|
485 |
|
checkpoint30 |
486 |
|
o Updates for OBCs |
487 |
|
o New experiment for test OBCs (internal_wave) |
488 |
|
o New output.txt in verification/exp4/results/ |
489 |
|
o Updates for KPP: calculation of viscosity corrected, new variables |
490 |
|
kpp_dumpFreq and kpp_taveFreq |
491 |
|
o CPP'd calls to system routines for TARGET_CRAY_VECTOR (P.H.) |
492 |
|
and entry for T90 in genmake |
493 |
|
|
494 |
|
checkpoint29 |
495 |
|
o packaged KPP and GM/Redi |
496 |
|
|
497 |
|
checkpoint28 |
498 |
|
o Corrected initialization of hFacMin for difference vertical coordinates |
499 |
|
o Modified calculation of partial cell thickness to more robust algorithm |
500 |
|
o config_summary.F: replaced write_1D_... by write_0D_... |
501 |
|
read_write.F: added subroutines write_0D_... |
502 |
|
o routines calc_common_factors, calc_gs, calc_gt, calc_phi_hyd, find_rho: |
503 |
|
included some initialisations required for TAMC. |
504 |
|
o routine calc_isoslopes: modified sqrt computation to make it |
505 |
|
differentiable for zero argument. |
506 |
|
o routines dynamics, impldiff: |
507 |
|
included store directives and tape key computations required for TAMC. |
508 |
|
o ALL TAMC related changes are between ifdef ALLOW_AUTODIFF_TAMC |
509 |
|
|
510 |
|
checkpoint27 |
511 |
|
o fixed calc_isoslopes() to so that cancellation of terms in tensor |
512 |
|
formulation works properly with variable resolution. |
513 |
|
o restructured the calling tree between the_model_main() and dynamics() |
514 |
|
o split initialise() into initialise_fixed() and initialise_varia() |
515 |
|
o introduced initialization file pSurfInitFile for free surface (cg2d_x) |
516 |
|
in new routine ini_psurf() |
517 |
|
|
518 |
|
checkpoint26 |
519 |
|
o moved some #ifdef in optional routines to encompass everything |
520 |
|
except the argument declarations. This was using up some memory. |
521 |
|
o fixed macros like _ADT to work with both versions of Linux cpp |
522 |
|
o cleaned up some unused and uninitialized variables |
523 |
|
(helps when debugging with strict compile options) |
524 |
|
o split up CPP_EEOPTIONS.h into options and macros |
525 |
|
(macros are now in eesupp/inc/CPP_EEMACROS.h) |
526 |
|
o patch for 2 processor JAM mode |
527 |
|
|
528 |
|
checkpoint25 |
529 |
|
o updates for OBCs and NH |
530 |
|
o dramatically reduced memory usage |
531 |
|
o added "JAM" routines for use on Artic network |
532 |
|
o parameterization of convection by implicit vertical diffusion |
533 |
|
o added a diagnostic of convective index |
534 |
|
o moved call to calc_divg_hat() from dynamics() to solve_for_pressure() |
535 |
|
(this is was partly for OBCs and NH but also in anticipation of |
536 |
|
an explicit free-surface option) |
537 |
|
o initial state input files for U and V |
538 |
|
|
539 |
|
checkpoint24 |
540 |
|
o Removed some spurious "REAL"s |
541 |
|
o Updated KPP to latest version from JPL |
542 |
|
o Added a COS(latitude) in horizontal viscosity |
543 |
|
|
544 |
|
checkpoint23 |
545 |
|
o Added del^4 diffusion for salt and temperature |
546 |
|
o Multiple minor fixes (implicit none's, arguments to global_sum, etc.) |
547 |
|
|
548 |
|
checkpoint22 |
549 |
|
o Made many small changes: implicit none, format(i5), etc... |
550 |
|
o Introduced KPP mixing scheme (compiles and runs but *not* tested) |
551 |
|
|
552 |
|
checkpoint21 |
553 |
|
o Introduced new I/O package that supports direct-access records (mdsio.F) |
554 |
|
o Split-up mid-level I/O routines |
555 |
|
o Updated input data for experiments 0,1,2,4 and 5 |
556 |
|
o Finally removed the genmake.* scripts (everyone seems happy with genmake) |
557 |
|
|
558 |
|
checkpoint20 |
559 |
|
o Tidied up open-boundaries some more |
560 |
|
o Added non-hydrostatic code |
561 |
|
o Fixed some input data |
562 |
|
o Modified MPI start-up to work in "coupled" context. |
563 |
|
|
564 |
|
checkpoint19 |
565 |
|
o Tidied up directory structure for verification experiments. |
566 |
|
o Added new code for open boundaries. |
567 |
|
o Corrected advective terms near boundaries. |
568 |
|
o Added CPP flag for "old UV" geometry and corrected spherical geometry. |
569 |
|
o Implemented free-slip/no-slip BCs and del^4 dissipation. |
570 |
|
o Split default parameters out of ini_parms.F into set_defaults.F. |
571 |
|
|
572 |
|
checkpoint18 |
573 |
|
o Further changes for optional code generation with |
574 |
|
CPP - ugh! |
575 |
|
|
576 |
|
checkpoint17 |
577 |
|
o Beginning to incorporating modularity |
578 |
|
for supporting atmos. and ocean configs. |
579 |
|
o Small changes for TAMC complinace |
580 |
|
o New ultra simple test case. Barotropic box |
581 |
|
configuration "exp0". |
582 |
|
|
583 |
|
checkpoint16 |
584 |
|
o Minor changes to exchange routines to support |
585 |
|
accumulation in reverse mode. Adjoint of an |
586 |
|
assignment is an addition. |
587 |
|
o Changes to support compilation by TAMC (LR(1) |
588 |
|
syntax) and by g77 under Linux ( 72 character |
589 |
|
limit ). |
590 |
|
|
591 |
|
checkpoint15 |
592 |
|
Rewrote exchange routines to allow |
593 |
|
o General tile <-> tile connectivity. |
594 |
|
o TAMC reverse mode flag ( is this really needed? ) |
595 |
|
o Variable width overlap and exchange region widths. |
596 |
|
o Hooks for sharing data via DMA, Arctic, Memory Channel, |
597 |
|
shmput/shmget, VIA, SYSV shmem and every other cool |
598 |
|
communication method. |
599 |
|
|
600 |
|
checkpoint14 |
601 |
|
Consistent isomorphism chages made. These allow dynamical core |
602 |
|
to support both pressure and meters as a vertical coordinate. |
603 |
|
|
604 |
|
checkpoint13 |
605 |
|
Release which corrects global_max problem and a couple |
606 |
|
of KGM time-averaging diagnostic errors. Also contains |
607 |
|
a double-gyre experiment setup as well as the baseline |
608 |
|
4 degree global template. The double gyre template is |
609 |
|
organised to allow it to be applied automatically to |
610 |
|
the baseline configuration. |
611 |
|
|
612 |
|
branch-point-rdot |
613 |
|
A few tidy-ups have been made bt the real point of this |
614 |
|
check-point (excuse the pun) is to allow a branch to be |
615 |
|
made for the purposes of adding the rDot alterations. |
616 |
|
I don't want to commit the rDot to the main-trunk until |
617 |
|
we've actually tested it... |
618 |
|
|
619 |
|
checkpoint12 |
620 |
|
Tidy up and added generic genmake script (formerly |
621 |
|
configure script). |
622 |
|
Released to testers. |
623 |
|
|
624 |
|
checkpoint11 |
625 |
|
Re-arranged initialise() and introduced ini_vertical_grid() |
626 |
|
and ini_masks_etc(). |
627 |
|
|
628 |
checkpoint10 |
checkpoint10 |
629 |
Introduced the configure script. |
Introduced the configure script. |
630 |
Separated out the diags package. |
Separated out the diags package. |