--- MITgcm/doc/tag-index 2001/09/28 17:53:37 1.53 +++ MITgcm/doc/tag-index 2002/12/27 08:01:54 1.53.2.17 @@ -1,8 +1,210 @@ -$Header: /home/ubuntu/mnt/e9_copy/MITgcm/doc/tag-index,v 1.53 2001/09/28 17:53:37 adcroft Exp $ +$Header: /home/ubuntu/mnt/e9_copy/MITgcm/doc/tag-index,v 1.53.2.17 2002/12/27 08:01:54 dimitri Exp $ Notes on tags used in MITgcmUV ============================== +release1_p10 +o modifications for using pkg/exf with pkg/seaice + - pkg/seaice CPP options SEAICE_EXTERNAL_FORCING + and SEAICE_EXTERNAL_FLUXES + - pkg/exf CPP options EXF_READ_EVAP and + EXF_NO_BULK_COMPUTATIONS + - usage examples are Experiments 8 and 9 in + verification/lab_sea/README + - verification/lab_sea default experiment now uses + pkg/gmredi, pkg/kpp, pkg/seaice, and pkg/exf + +release1_p9 +o pkg/seaice + - removed GOTO's and added taf directives + - double precision constants to reduce the g77 (Linux) + to F77 (SGI) differences reported in release1_p8 +o tools/genmake + - added SGI options +o verification/testscript + - updated to that of checkpoint47a_post +o verification/global_ocean.90x40x15/input/eedata + - modified for SGI f77 compatibility +o verification/lab_sea + - added description of sea-ice model + - added missing matlab routines + - added test of thermodynamics parallelization + +release1_p8 +o verification/natl_box: + updating new external_fields_load routine +o New package: pkg/seaice + Sea ice model by D. Menemenlis (JPL) and Jinlun Zhang (Seattle). + The sea-ice code is based on Hibler (1979-1980). + Two sea-ice dynamic solvers, ADI and LSR, are included. + In addition to computing prognostic sea-ice variables and diagnosing + the forcing/external data fields that drive the ocean model, + SEAICE_MODEL also sets theta to the freezing point under sea-ice. + The implied surface heat flux is then stored in variable + surfaceTendencyTice, which is needed by KPP package (kpp_calc.F and + kpp_transport_t.F) to diagnose surface buoyancy fluxes and for the + non-local transport term. Because this call precedes model + thermodynamics, temperature under sea-ice may not be "exactly" at + the freezing point by the time theta is dumped or time-averaged. + N.B.: fairly large differences in accuracy occur across + different platforms/compilers; comparison between + g77 (Linux) and F77 (SGI Origin 2000/MIPSpro) + generated output gives: + T S U V + C D M c m s m s m s m s + n p a R g m m e . m m e . m m e . m m e . + f n k u 2 i a a d i a a d i a a d i a a d + g d e n d n x n . n x n . n x n . n x n . + + Y Y Y Y 5 5 7 7 7 8 10 9 6 6 6 6 7 5 7 5 7 FAIL lab_sea + + +release1_p7 +o GAD: + - generated new common blocks to account for call of + same gad routines with differing traceridentities + (needed to modify tracerIdentity indices in GAD.h) + - generated separate common blocks for case useCubedSphereExchange + (Department of Futurology) + - parameter lists to gmredi_?transport: added tracerIdentity + - added new key indices to tamc.h +o external_fields_load: + - added this routine to TAF list + - needed to make some common blocks global and additional storing + along the same lines as exf package (checkpoint_lev?_directives.h) +o exf: + updated external forcing package + - bug fixes carried over from ecco-branch + (missing OBCS_OPTIONS.h in two routines) + - enable easy to use "no forcing". + - added exf I/O for atmospheric loading + - added exf I/O for runoff data + - transfered scaling between exf <-> MITgcm to exf namelist +o Adding new verification experiment global_with_exf. + This verification experiment is almost identical to the + global_ocean.90x40x15 experiment, except that it uses + the exf (and cal) package instead of the + external_fields_load routine (cf README file). + +release1_p6 +o fixed the verification/global_ocean.90x40x15 experiment: + - new bathymetry (the world according to A., JMC, and M.) + - new initial fields and forcing fields (*.bin files) + - new POLY3.COEFFS (for the next release one should switch to a full + equation of state) + - fixed several errors and redundancies in the data file + - experiment uses looped cells + - added matlab directory with diagnostic scripts for plotting of output + +release1_p5 +o import recent fix from MAIN branch: + - use recip_dx*,recip_dy* instead of /dx*,/dy* in orlanski_E,W,N,S + - change phiMin in exp1 (to agree with documentation) + from checkpoint45 to checkpoint45a_post: + - specific exchange for X-slice domain (case Ny=1) + - argument futureIter of S/R obcs_calc missing in + exp4 & internal_wave /code + - solve_for_pressure : set cg2d_x to zero where OBCS are applied + from checkpoint44f_post to checkpoint44g_post: + - fix surface correction term in multiDimAdvection + (affects plume_on_slope results +o bug fix in packages_readparms (missing ALLOW_CALENDAR) +o bug fix in CG2D.h (correct array size for LETS_MAKE_JAM +o Adjoint-related bug fixes in kpp: + - kpp_calc: sore of kpphbl avoids recomputation/call to S/R kppmix + - kpp_routines: store of Rib avoids partial recomputation bug of TAF. +o added Eliassen-Palm flux hooks (dynamics,ini_fields) +o removed unused TAF keys iikey, idkey (dynamics,thermodynamics) +o flow directives: + - new for S/R do_the_model_io + - enhanced for S/R checkpoint +o added Eliassen Palm flux controls to gradient check package +o new ctrl package + - adopted from ECCO environment to enable optimization + - added Eliassen Palm fluxes to controls + - adjusted global_ocean.90x40x15/ and carbon/ accordingly + +release1_p4 +o Removed f90 comments ("!") +o Modified initialisations to enable exf package for MITgcm + (without invoking ECCO_PACKAGE). +o modifications to gradient check package (Martin Losch) + - enable centered differences + - modified format of standard output + +release1_p3 +o added tangent linear setup to verification/carbon/ +o added adjoint sensitivity setup to verification/global_ocean... +o moved packages_init_variables before convective_adjustment +o output of verif. which use GMRedi brought up-to-date with + MAIN trunk (those were re-created after changes in GMRedi) +o included CPP option SINGLE_LAYER_MODE + to configure barotropic setup (Martin Losch). +o Removed auxiliary variable in impldiff + (caused numerical differences with MAIN trunk routine). +o Introduced CPP option ALLOW_AUTODIFF_MONITOR to + disable adcommon.h/g_common.h by default. +o Cleaned exchange calls in cg2d. + +release1_p2 +o fixed array boundary problem for adjoint + (related to partial recomputation within subroutine + related to dynamics -> calc_viscosity -> mom_... +o fixed recomputation in thermodynamics +o prepare (but not complete) recomputation problem in impldiff +o fixed problem for adjoint of global_max +o switched off sponge layer code in external_forcing + +release1_p1 +o merged necessary patches: + - AD-related changes for GMRedi + - fixes i KPP (delZ -> drF) + - hook to OBCS songe layer code in external_forcing + - errorMessageUnit non-zero in eeboot.F + - modified test cost function and carbon verif. + +release1_chkpt44d_post = chkpt44d_post + +chkpt44d_pre,post +o added missing EXCLUDE_MONITOR flags +o changed "e" to "_d" in gmredi_slope_limit, gmredi_slope_psi + (incompatible typ in MIN/MAX expressions caused problems + on IBM SP3) +o in genmake added variable MAKEDEPEND + plus resetting for case SunOS +o added timer_stats.c routine for IBM SP3 +o removed variables in dynamics + +o real fresh water flux implemented with non-linear free-surface. + +chkpt44c_pre,post +o few fix (mask in shap_s2, EmPmR in external_field_load, + USE_NATURAL_BCS in solve_for_P); +o add arguments myIter & myTime to S/R obcs_calc & solve_for_P + +checkpoint44b_pre/_post +o merge of relevant stuff from the ecco-branch: + - genmake: removed $S64 overwrite for case SunOS + - pkg/exf: update and corrections for field swapping and obcs + - pkg/ecco: parameter lists for the_model_main, the_main_loop + harmonized between ECCO and MITgcm + - pkg/autodiff: added flow directives for obcs, mdsio_gl_slice + updated checkpointing_lev... lists for obcs + - model/src: minor changes in forward_step, plot_field + added directive for divided adjoint in the_main_loop + - pkg/mdsio: added mdsio_gl_slice + +o check parameters & config (chkpt44a_pre,post) +o OBC and NonLin_FrSurf. + +checkpoint44 +o fix bug in mom_vi_del2uv +o select when filters are applied ; add options to zonal_filter (data.zonfilt) +o gmredi: fix Pb in the adiabatic form ; add options (.e.g. Bolus advection) +o update AIM experiments (NCEP input files) +o improve and extend diagnostics (Monitor, TimeAve with NonLin-FrSurf) +o added some stuff for AD + checkpoint43 o added two new advection tests o added global 4x4 degree ocean test