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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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ecco_c44_e19 |
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o merged necessary patches: |
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- AD-related changes for GMRedi |
| 9 |
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- fixes i KPP (delZ -> drF) |
| 10 |
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- hook to OBCS songe layer code in external_forcing |
| 11 |
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- errorMessageUnit non-zero in eeboot.F |
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- included GMREDI, EXACT_CONSERV to natl_box_adjoint verif. |
| 13 |
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ecco_c44_e18 |
| 15 |
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o sponge layer code for obcs was missing |
| 16 |
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- added hook in external_forcing.F |
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- added storing for TAF |
| 18 |
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o new routine cost_init_barfiles to initialise |
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adjoint fields adtbar, adsbar, adpsbar |
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(needed in conjunction with corrected ladinit for active I/O) |
| 21 |
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o cleaned up and corrected order in packages_readparms, ecco_readparms |
| 22 |
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o corrected and simplified weights for obcs controls |
| 23 |
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- weight fields simplified |
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- bug fix in ctrl_pack |
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- no more write of control vector in ctrl_pack |
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o i/j index bug fixes in cost_ssh_mean |
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| 28 |
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ecco_c44_e17 |
| 29 |
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o bug fixes in cost package |
| 30 |
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* wrong identifier for active I/O of monthly mean psbar |
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(cost_averagesfields, cost_ssh) xx_psbar_dummy |
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* cleaned all identifier for active I/O of monthly fields |
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* wrong ladinit in various cost routines |
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o merge with interval (chkpt44c_post - chkpt44d_post) |
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* added missing EXCLUDE_MONITOR flags |
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* changed "e" to "_d" in gmredi_slope_limit, gmredi_slope_psi |
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(incompatible typ in MIN/MAX expressions caused problems |
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on IBM SP3) |
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* in genmake added variable MAKEDEPEND |
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plus resetting for case SunOS |
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added timer_stats.c routine for IBM SP3 |
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* removed variables in dynamics |
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ecco_c44_e16 |
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o new ECCO checkpoint, the first since ecco_c43_e15 |
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which is branched from MITgcm. |
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All changes were merged in between (see ecco-branch-mod? tags). |
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o last changes: |
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* assuming path for TAF and TAMC are known (e.g. in $path) |
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* genmake: |
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- added tools/xmakedepend to circumvene shortcoming of |
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SUN's makedepend (size too small) |
| 53 |
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- invoking ../tools/xmakedepend instead of makedepend |
| 54 |
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- changed compiler flags for case SunOS |
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ecco-branch-mod5 |
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o mod's to reproduce open boundary run |
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o enable field swapping for OB's and climatology |
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o update store directives for OB control |
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o added option ALLOW_OBCS_PRESCRIBE |
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o call of getobcs now out of obcs_calc (param. list modified) |
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ecco-branch-mod4 |
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o this is the second part of changes necessary to reconcile |
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the natl_box_adjoint verification (with and without grdchk). |
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>>>!!! CHANGES BETWEEN THE TAGS ecco-branch-mod3 !!!<<< |
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>>>!!! AND ecco-branch-mod4 !!!<<< |
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>>>!!! SHOULD BE MERGED INTO THE MAIN TRUNK !!!<<< |
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- genmake: removed $S64 overwrite for case SunOS |
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- pkg/exf: update and corrections for field swapping and obcs |
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- pkg/ecco: parameter lists for the_model_main, the_main_loop |
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harmonized between ECCO and MITgcm |
| 73 |
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- pkg/autodiff: added flow directives for obcs, mdsio_gl_slice |
| 74 |
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updated checkpointing_lev... lists for obcs |
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- model/src: minor changes in forward_step, plot_field |
| 76 |
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- pkg/mdsio: added mdsio_gl_slice |
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ecco-branch-mod3 |
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o this is the first part of changes necessary to reconcile |
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natl_box_adjoint verification (with and without grdchk). |
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This set of changes is relevant for ECCO only. |
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The next set/tag of changes (ecco-branch-mod4) |
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should be merged into the main trunk. |
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- update some options |
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- parameter lists of ecco_the_model_main and ecco_the_main_loop |
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differed from those of the MITgcm counterparts. |
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ecco-branch-mod2 |
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o update ecco-branch-mod1 to checkpoint44 |
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o exclude from updates: |
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- verification/ |
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- adjoint/ |
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- pkg/cost |
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- pkg/ctrl |
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- pkg/ecco |
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- pkg/obcs |
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- model/src/the_model_main.F |
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- model/src/the_main_loop.F |
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checkpoint44 |
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o apply Shapiro filter on T&S before calc_PhiHyd (stagger time stepping) |
| 102 |
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o fix bug in mom_vi_del2uv |
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o added some stuff for AD |
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ecco-branch-mod1 |
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o based on c43 |
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o replaced packages cost, ctrl, ecco, obcs |
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o removed MITgcm verif.'s, added ECCO verif.'s |
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o added lsopt, optim for line search optimization. |
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checkpoint43 |
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o added two new advection tests |
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o added global 4x4 degree ocean test |
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o added test of H&S94 with free surface on cube |
| 115 |
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o some final mods for gradient check, adjoint,... |
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checkpoint42 |
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Fixed AD-related problems: |
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o Store directives up-to-date with re-arranged Adams-Bashforth |
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(mainly thermodynamics.F) |
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o New store directives for multi-dim. advection schemes |
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* new CPP flag ALLOW_MULTI_DIM_ADVECTION |
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* new common block and key passkey |
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(mainly gad_advection.F) |
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o Modified store directives for split of dynamics/thermodynamics |
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for the case ALLOW_KPP |
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o Cleaned argument list for timestep_tracer.F |
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checkpoint41 |
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o re-formatted/added comments in prologues of key subroutines |
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to work with protex |
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checkpoint40 |
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o moved calc_gs, calc_gt and calc_tr1 back to model/src |
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o added FLT (floats) package from Arne along with demo. experiment |
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o re-arranged Adams-Bashforth scheme for tracers to allow easier |
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implementation of forward-in-time forcing terms |
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o more mods for non-linear free-surface including new variable |
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o modified multi-dim method to work on cube |
| 140 |
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o bug fix in KPP (from DM) |
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checkpoint40pre9 |
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o added DST advection schemes |
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o fix MPI bug on SGI's |
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o modifications for non-linear free-surface |
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o fixed conditionals for fixed flow/passive tracer only mode |
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o added tension/strain form of stress tensor |
| 148 |
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o changes to commenting of arguments for TAF/TAMC |
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o added/updated many matlab scripts |
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o added multi-dimensional advection method for tracers |
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checkpoint40pre8 |
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o new package rw/ |
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Added method for dumping intermediate local arrays: |
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mdsio_writetile - same as mdsio_writefield except works from inside |
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bi,bj loop |
| 157 |
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mdsio_writelocal - same as mdsio_writetile except works for local |
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arrays |
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write_local_r? - higher-level wrapper for mdsio_writelocal |
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Controlled by diagFreq. Defaults to zero (ie. no dumps) |
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Example given at end of mom_vecinv.F that dumps some local arrays. |
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o replaced calc_mom_rhs.F by mom_fluxform.F/mom_vecinc.F to |
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control flux-form versus vector invariant code. |
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Switch is runtime flag vectorInvariantMomentum (defaults to false) |
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or genmake -DISABLE ... |
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o TAMC-related update to cope with mom_fluxform.F/mom_vecinc.F |
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(additional storing is now needed for case vecinv; |
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currently nothing implemented to switch this storing off |
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in case fluxform is used since no CPP flag available). |
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checkpoint40pre7 |
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o bug fix in dynamics.F |
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calc_viscosity called before k=1,Nr loop. |
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o added some #ifdef's ALLOW_PASSIVE_TRACER |
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o cleaned initialisations in ctrl_map_ini |
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related to TAF |
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checkpoint40pre6 |
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o split dynamics into thermodynamics & dynamics |
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o corresponding split of calc_diffusivity into |
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calc_diffusivity, calc_viscosity |
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(kpp_calc_diff, kpp_calc_visc). |
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o Added diffkr, kapgm to control variables |
| 184 |
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o bug fix in gmredi_slope_limit for ldd97 |
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checkpoint40pre5 |
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o proper initialization of Adams-Bashforth time stepping |
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+ uses forward step for very first step of model (iter=0) |
| 189 |
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o re-generated *all* output since almost all output is modified by this |
| 190 |
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change (sorry but we've been putting this one off for about 2 years) |
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+ natl_box, aim.5l_Equatorial_Channel and aim.5l_zon-ave were |
| 192 |
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*not* regenerated since they are already out of date and I don't |
| 193 |
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want to create the impression that they are suddenly working. |
| 194 |
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o removed KAP stuff for DEC's |
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o modified/added many .cvsignore files in */code and */input |
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o added new expt "solid-body.cs-32x32x1" |
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+ this uses an alternative form of ini_curvilinear_grid.F which |
| 198 |
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is not necessarily any better than the current one... |
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checkpoint40pre4 |
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o added re-initialisations of utrans,vtrans,rtrans in |
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calc_common_factors which are crucial for TAF. |
| 203 |
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o extended iMin,jMin range for calc_common_factors, |
| 204 |
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calc_diffusivity |
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o added option ALLOW_PASSIVE_TRACER |
| 206 |
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o a few minor updates and fixes |
| 207 |
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checkpoint40pre3 |
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o created calc_gtr1.F for gad package |
| 210 |
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o split the_main_loop and re-introduced forward_step |
| 211 |
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o some recomputations of nIter0 for TAMC |
| 212 |
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checkpoint40pre2 |
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o Updated to latest branch of AJA, JMC |
| 215 |
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o Added gradient check package |
| 216 |
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o Added routines for passive tracer handling |
| 217 |
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o Added carbon sequestration sensitivity experiment |
| 218 |
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checkpoint39 |
| 220 |
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o Modifications and fixes to support TAMC |
| 221 |
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(mainly missing or wrong directives) |
| 222 |
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o Corrected common blocks when fooling TAMC to produce adjoint I/O |
| 223 |
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in addummy_in_stepping |
| 224 |
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o Updated verification/vero/ (bug fixes in code/, correct pickups in input/) |
| 225 |
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o Enabled "sliced" (xz-,yz-) exchanges, needed for obcs. |
| 226 |
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o Included following packages: |
| 227 |
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cal: calendar |
| 228 |
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exf: external forcing |
| 229 |
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ecco: essential routines to control use of cal, exf |
| 230 |
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(NB: this is not the full ECCO environment) |
| 231 |
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o disabled some packages by default in genmake |
| 232 |
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| 233 |
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checkpoint38 |
| 234 |
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o see notes_c37_adj.txt |
| 235 |
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o corrected wrong layer index in external_forcing_t |
| 236 |
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o replaced the_main_loop/forward_step by the_main_loop |
| 237 |
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o removed forceoutput from write_state |
| 238 |
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(replaced criteria for initial/final state) |
| 239 |
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o added runtime flag for pre-C35 pickups: usePickupBeforeC35 |
| 240 |
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| 241 |
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checkpoint37 |
| 242 |
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o mdsio.F routine split and packaged in pkg/mdsio |
| 243 |
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(mdsio.F and mdsio_gl.F still exist in eesupp/src but are not |
| 244 |
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used unless genmake -disable=mdsio) |
| 245 |
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o allow a more precise surface-geopotential gradient for the atmosphere |
| 246 |
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taking into account the change in space of Alpha (=1/rho) at the surface. |
| 247 |
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o variable "etaN" (replace cg2d_x) is the surface R-anomaly [r unit] |
| 248 |
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(ocean: sea surface height [m] / atmos: surface pressure anomaly [Pa]) |
| 249 |
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o Change units: Phi_Hydrostatic (=phiHyd), Phi_Surface(=cg2d_x) and |
| 250 |
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Phi_NonHydrostatic (=cg3d_x), all have now the dimension of a potential |
| 251 |
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[m2/s2] (pressure/rhoConst in the ocean ; Geo-Potential in the atmosphere). |
| 252 |
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o Time-Average diagnostics defined as a pseudo package "timeave". |
| 253 |
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o pickup files : old pickup (before c35) did not work with new code (c35 |
| 254 |
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and after) unless activating 2 commented lines in initialise-varia. |
| 255 |
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o Non-Hydrostatic pickup file Pb fixed. |
| 256 |
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o bug with Rigid-lid version (since c35) fixed. |
| 257 |
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| 258 |
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checkpoint36 |
| 259 |
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o implement Crank-Nickelson barotropic time-stepping |
| 260 |
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o recover Time-Average diagnostics |
| 261 |
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o fix Pb in checkpoint (PR#19) |
| 262 |
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o AIM become a standard package ; clean unused CPP_kees |
| 263 |
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| 264 |
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checkpoint35 |
| 265 |
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o subtantial rewrite of dynamics.f |
| 266 |
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o allows staggered time-stepping |
| 267 |
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o packaged obcs, aim (Atmospheric Physics), zonal_filt, shap_filt |
| 268 |
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o added bottom drag (linear + quadratic) |
| 269 |
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|
| 270 |
checkpoint34 |
checkpoint34 |
| 271 |
o Modified exchange routines for correct reverse simulation. |
o Modified exchange routines for correct reverse simulation. |
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o Added verification output to comply with bug fix in impldiff.F |
o Added verification output to comply with bug fix in impldiff.F |
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