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$Header: /u/gcmpack/MITgcm/doc/tag-index,v 1.53.4.5 2002/02/09 02:28:46 heimbach Exp $ |
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|
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Notes on tags used in MITgcmUV |
4 |
============================== |
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|
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ecco_c44_e16 |
7 |
o new ECCO checkpoint, the first since ecco_c43_e15 |
8 |
which is branched from MITgcm. |
9 |
All changes were merged in between (see ecco-branch-mod? tags). |
10 |
o last changes: |
11 |
* assuming path for TAF and TAMC are known (e.g. in $path) |
12 |
* genmake: |
13 |
- added tools/xmakedepend to circumvene shortcoming of |
14 |
SUN's makedepend (size too small) |
15 |
- invoking ../tools/xmakedepend instead of makedepend |
16 |
- changed compiler flags for case SunOS |
17 |
|
18 |
ecco-branch-mod5 |
19 |
o mod's to reproduce open boundary run |
20 |
o enable field swapping for OB's and climatology |
21 |
o update store directives for OB control |
22 |
o added option ALLOW_OBCS_PRESCRIBE |
23 |
o call of getobcs now out of obcs_calc (param. list modified) |
24 |
|
25 |
ecco-branch-mod4 |
26 |
o this is the second part of changes necessary to reconcile |
27 |
the natl_box_adjoint verification (with and without grdchk). |
28 |
>>>!!! CHANGES BETWEEN THE TAGS ecco-branch-mod3 !!!<<< |
29 |
>>>!!! AND ecco-branch-mod4 !!!<<< |
30 |
>>>!!! SHOULD BE MERGED INTO THE MAIN TRUNK !!!<<< |
31 |
- genmake: removed $S64 overwrite for case SunOS |
32 |
- pkg/exf: update and corrections for field swapping and obcs |
33 |
- pkg/ecco: parameter lists for the_model_main, the_main_loop |
34 |
harmonized between ECCO and MITgcm |
35 |
- pkg/autodiff: added flow directives for obcs, mdsio_gl_slice |
36 |
updated checkpointing_lev... lists for obcs |
37 |
- model/src: minor changes in forward_step, plot_field |
38 |
- pkg/mdsio: added mdsio_gl_slice |
39 |
|
40 |
ecco-branch-mod3 |
41 |
o this is the first part of changes necessary to reconcile |
42 |
natl_box_adjoint verification (with and without grdchk). |
43 |
This set of changes is relevant for ECCO only. |
44 |
The next set/tag of changes (ecco-branch-mod4) |
45 |
should be merged into the main trunk. |
46 |
- update some options |
47 |
- parameter lists of ecco_the_model_main and ecco_the_main_loop |
48 |
differed from those of the MITgcm counterparts. |
49 |
|
50 |
ecco-branch-mod2 |
51 |
o update ecco-branch-mod1 to checkpoint44 |
52 |
o exclude from updates: |
53 |
- verification/ |
54 |
- adjoint/ |
55 |
- pkg/cost |
56 |
- pkg/ctrl |
57 |
- pkg/ecco |
58 |
- pkg/obcs |
59 |
- model/src/the_model_main.F |
60 |
- model/src/the_main_loop.F |
61 |
|
62 |
checkpoint44 |
63 |
o apply Shapiro filter on T&S before calc_PhiHyd (stagger time stepping) |
64 |
o fix bug in mom_vi_del2uv |
65 |
o added some stuff for AD |
66 |
|
67 |
ecco-branch-mod1 |
68 |
o based on c43 |
69 |
o replaced packages cost, ctrl, ecco, obcs |
70 |
o removed MITgcm verif.'s, added ECCO verif.'s |
71 |
o added lsopt, optim for line search optimization. |
72 |
|
73 |
checkpoint43 |
74 |
o added two new advection tests |
75 |
o added global 4x4 degree ocean test |
76 |
o added test of H&S94 with free surface on cube |
77 |
o some final mods for gradient check, adjoint,... |
78 |
|
79 |
checkpoint42 |
80 |
Fixed AD-related problems: |
81 |
o Store directives up-to-date with re-arranged Adams-Bashforth |
82 |
(mainly thermodynamics.F) |
83 |
o New store directives for multi-dim. advection schemes |
84 |
* new CPP flag ALLOW_MULTI_DIM_ADVECTION |
85 |
* new common block and key passkey |
86 |
(mainly gad_advection.F) |
87 |
o Modified store directives for split of dynamics/thermodynamics |
88 |
for the case ALLOW_KPP |
89 |
o Cleaned argument list for timestep_tracer.F |
90 |
|
91 |
checkpoint41 |
92 |
o re-formatted/added comments in prologues of key subroutines |
93 |
to work with protex |
94 |
|
95 |
checkpoint40 |
96 |
o moved calc_gs, calc_gt and calc_tr1 back to model/src |
97 |
o added FLT (floats) package from Arne along with demo. experiment |
98 |
o re-arranged Adams-Bashforth scheme for tracers to allow easier |
99 |
implementation of forward-in-time forcing terms |
100 |
o more mods for non-linear free-surface including new variable |
101 |
o modified multi-dim method to work on cube |
102 |
o bug fix in KPP (from DM) |
103 |
|
104 |
checkpoint40pre9 |
105 |
o added DST advection schemes |
106 |
o fix MPI bug on SGI's |
107 |
o modifications for non-linear free-surface |
108 |
o fixed conditionals for fixed flow/passive tracer only mode |
109 |
o added tension/strain form of stress tensor |
110 |
o changes to commenting of arguments for TAF/TAMC |
111 |
o added/updated many matlab scripts |
112 |
o added multi-dimensional advection method for tracers |
113 |
|
114 |
checkpoint40pre8 |
115 |
o new package rw/ |
116 |
Added method for dumping intermediate local arrays: |
117 |
mdsio_writetile - same as mdsio_writefield except works from inside |
118 |
bi,bj loop |
119 |
mdsio_writelocal - same as mdsio_writetile except works for local |
120 |
arrays |
121 |
write_local_r? - higher-level wrapper for mdsio_writelocal |
122 |
Controlled by diagFreq. Defaults to zero (ie. no dumps) |
123 |
Example given at end of mom_vecinv.F that dumps some local arrays. |
124 |
o replaced calc_mom_rhs.F by mom_fluxform.F/mom_vecinc.F to |
125 |
control flux-form versus vector invariant code. |
126 |
Switch is runtime flag vectorInvariantMomentum (defaults to false) |
127 |
or genmake -DISABLE ... |
128 |
o TAMC-related update to cope with mom_fluxform.F/mom_vecinc.F |
129 |
(additional storing is now needed for case vecinv; |
130 |
currently nothing implemented to switch this storing off |
131 |
in case fluxform is used since no CPP flag available). |
132 |
|
133 |
checkpoint40pre7 |
134 |
o bug fix in dynamics.F |
135 |
calc_viscosity called before k=1,Nr loop. |
136 |
o added some #ifdef's ALLOW_PASSIVE_TRACER |
137 |
o cleaned initialisations in ctrl_map_ini |
138 |
related to TAF |
139 |
|
140 |
checkpoint40pre6 |
141 |
o split dynamics into thermodynamics & dynamics |
142 |
o corresponding split of calc_diffusivity into |
143 |
calc_diffusivity, calc_viscosity |
144 |
(kpp_calc_diff, kpp_calc_visc). |
145 |
o Added diffkr, kapgm to control variables |
146 |
o bug fix in gmredi_slope_limit for ldd97 |
147 |
|
148 |
checkpoint40pre5 |
149 |
o proper initialization of Adams-Bashforth time stepping |
150 |
+ uses forward step for very first step of model (iter=0) |
151 |
o re-generated *all* output since almost all output is modified by this |
152 |
change (sorry but we've been putting this one off for about 2 years) |
153 |
+ natl_box, aim.5l_Equatorial_Channel and aim.5l_zon-ave were |
154 |
*not* regenerated since they are already out of date and I don't |
155 |
want to create the impression that they are suddenly working. |
156 |
o removed KAP stuff for DEC's |
157 |
o modified/added many .cvsignore files in */code and */input |
158 |
o added new expt "solid-body.cs-32x32x1" |
159 |
+ this uses an alternative form of ini_curvilinear_grid.F which |
160 |
is not necessarily any better than the current one... |
161 |
|
162 |
checkpoint40pre4 |
163 |
o added re-initialisations of utrans,vtrans,rtrans in |
164 |
calc_common_factors which are crucial for TAF. |
165 |
o extended iMin,jMin range for calc_common_factors, |
166 |
calc_diffusivity |
167 |
o added option ALLOW_PASSIVE_TRACER |
168 |
o a few minor updates and fixes |
169 |
|
170 |
checkpoint40pre3 |
171 |
o created calc_gtr1.F for gad package |
172 |
o split the_main_loop and re-introduced forward_step |
173 |
o some recomputations of nIter0 for TAMC |
174 |
|
175 |
checkpoint40pre2 |
176 |
o Updated to latest branch of AJA, JMC |
177 |
o Added gradient check package |
178 |
o Added routines for passive tracer handling |
179 |
o Added carbon sequestration sensitivity experiment |
180 |
|
181 |
checkpoint39 |
182 |
o Modifications and fixes to support TAMC |
183 |
(mainly missing or wrong directives) |
184 |
o Corrected common blocks when fooling TAMC to produce adjoint I/O |
185 |
in addummy_in_stepping |
186 |
o Updated verification/vero/ (bug fixes in code/, correct pickups in input/) |
187 |
o Enabled "sliced" (xz-,yz-) exchanges, needed for obcs. |
188 |
o Included following packages: |
189 |
cal: calendar |
190 |
exf: external forcing |
191 |
ecco: essential routines to control use of cal, exf |
192 |
(NB: this is not the full ECCO environment) |
193 |
o disabled some packages by default in genmake |
194 |
|
195 |
checkpoint38 |
196 |
o see notes_c37_adj.txt |
197 |
o corrected wrong layer index in external_forcing_t |
198 |
o replaced the_main_loop/forward_step by the_main_loop |
199 |
o removed forceoutput from write_state |
200 |
(replaced criteria for initial/final state) |
201 |
o added runtime flag for pre-C35 pickups: usePickupBeforeC35 |
202 |
|
203 |
checkpoint37 |
204 |
o mdsio.F routine split and packaged in pkg/mdsio |
205 |
(mdsio.F and mdsio_gl.F still exist in eesupp/src but are not |
206 |
used unless genmake -disable=mdsio) |
207 |
o allow a more precise surface-geopotential gradient for the atmosphere |
208 |
taking into account the change in space of Alpha (=1/rho) at the surface. |
209 |
o variable "etaN" (replace cg2d_x) is the surface R-anomaly [r unit] |
210 |
(ocean: sea surface height [m] / atmos: surface pressure anomaly [Pa]) |
211 |
o Change units: Phi_Hydrostatic (=phiHyd), Phi_Surface(=cg2d_x) and |
212 |
Phi_NonHydrostatic (=cg3d_x), all have now the dimension of a potential |
213 |
[m2/s2] (pressure/rhoConst in the ocean ; Geo-Potential in the atmosphere). |
214 |
o Time-Average diagnostics defined as a pseudo package "timeave". |
215 |
o pickup files : old pickup (before c35) did not work with new code (c35 |
216 |
and after) unless activating 2 commented lines in initialise-varia. |
217 |
o Non-Hydrostatic pickup file Pb fixed. |
218 |
o bug with Rigid-lid version (since c35) fixed. |
219 |
|
220 |
checkpoint36 |
221 |
o implement Crank-Nickelson barotropic time-stepping |
222 |
o recover Time-Average diagnostics |
223 |
o fix Pb in checkpoint (PR#19) |
224 |
o AIM become a standard package ; clean unused CPP_kees |
225 |
|
226 |
checkpoint35 |
227 |
o subtantial rewrite of dynamics.f |
228 |
o allows staggered time-stepping |
229 |
o packaged obcs, aim (Atmospheric Physics), zonal_filt, shap_filt |
230 |
o added bottom drag (linear + quadratic) |
231 |
|
232 |
checkpoint34 |
233 |
o Modified exchange routines for correct reverse simulation. |
234 |
o Added verification output to comply with bug fix in impldiff.F |
235 |
as of c33 (exp2, natl_box). |
236 |
o Corrected store directives in dynamics.F |
237 |
o Corrected array boundaries in impldiff.F |
238 |
o Corrected array dimensions in gmredi. |
239 |
Added temporary scalars to avoid storage by TAMC (gmredi, kpp). |
240 |
o Added routine GLOBAL_SUM_INT to global_sum.F |
241 |
o Added mdsio_gl.F for ECCO purposes. |
242 |
|
243 |
checkpoint33 |
244 |
o Fixed bug in lower BC in impldiff.F |
245 |
o Fixed confusion about units of forcing arrays in FFIELDS.h |
246 |
namely Fu,Fv,Qnet,Qsw,EmPmR: |
247 |
- Removed verification/natl_box/code/external_fields_scale.F |
248 |
(did not differ from that in model/src) |
249 |
- Changed units of fu,fv,Qnet,Qsw,EmPmR back to proper units |
250 |
(see FFIELDS.h for description) |
251 |
- Scale fu,fv,Qnet,Qsw,EmPmR when used in external_forcing_surf.F, |
252 |
kpp_calc.F and kpp_transport_t.F |
253 |
- Removed model/src/external_fields_scale.F and calls to it |
254 |
- verification/natl_box uses flux data with "atmospheric" sign so |
255 |
a special version of external_fields_load.F is used to |
256 |
change the data as it's read in. This way, the arrays |
257 |
have the right units and signs at all times tha a user could |
258 |
possibly use them. |
259 |
o Corrected genmake to delete a temporary file during configuration |
260 |
|
261 |
checkpoint32 |
262 |
o Scaling of forcing fields moved from external_forcing.F to |
263 |
external_fields_scale.F, called directly after loading fields. |
264 |
o Surface relaxation terms added to surface tendency fields in |
265 |
extra subroutine. |
266 |
o impldiff.F changed to avoid storing by TAMC of huge intermediate |
267 |
fields. |
268 |
o Changes in GMRedi to comply with packaging structure. |
269 |
o Modifications and bug fixes in KPP package. |
270 |
o Verification experiment for KPP added (verification/nat_box/) |
271 |
|
272 |
checkpoint31 |
273 |
o Packages interface brought in line with defined standard |
274 |
-> new routines packages_...F |
275 |
-> changes in initialise_fixed.F, initialise_varia.F |
276 |
-> enables initialisation interface for ECCO package |
277 |
o Rescaling of external forcing fields immediately after read |
278 |
(removed from external_forcing.F) |
279 |
-> new: surface_fields_scale.F |
280 |
-> affects ini_foorcing.F, external_fields_load.F |
281 |
o Computation of surface tendencies before tendency updates. |
282 |
-> new: external_forcing_surf.F |
283 |
o Change of variable names useGMRedi, useKPP, useECCO |
284 |
o Further changes in dynamics.F, impldiff.F for TAMC |
285 |
o Tested for experiments 0, 2, 4. |
286 |
- not yet tested for GMRedi. |
287 |
- not yet tested for KPP. |
288 |
|
289 |
checkpoint30 |
290 |
o Updates for OBCs |
291 |
o New experiment for test OBCs (internal_wave) |
292 |
o New output.txt in verification/exp4/results/ |
293 |
o Updates for KPP: calculation of viscosity corrected, new variables |
294 |
kpp_dumpFreq and kpp_taveFreq |
295 |
o CPP'd calls to system routines for TARGET_CRAY_VECTOR (P.H.) |
296 |
and entry for T90 in genmake |
297 |
|
298 |
checkpoint29 |
299 |
o packaged KPP and GM/Redi |
300 |
|
301 |
checkpoint28 |
302 |
o Corrected initialization of hFacMin for difference vertical coordinates |
303 |
o Modified calculation of partial cell thickness to more robust algorithm |
304 |
o config_summary.F: replaced write_1D_... by write_0D_... |
305 |
read_write.F: added subroutines write_0D_... |
306 |
o routines calc_common_factors, calc_gs, calc_gt, calc_phi_hyd, find_rho: |
307 |
included some initialisations required for TAMC. |
308 |
o routine calc_isoslopes: modified sqrt computation to make it |
309 |
differentiable for zero argument. |
310 |
o routines dynamics, impldiff: |
311 |
included store directives and tape key computations required for TAMC. |
312 |
o ALL TAMC related changes are between ifdef ALLOW_AUTODIFF_TAMC |
313 |
|
314 |
checkpoint27 |
315 |
o fixed calc_isoslopes() to so that cancellation of terms in tensor |
316 |
formulation works properly with variable resolution. |
317 |
o restructured the calling tree between the_model_main() and dynamics() |
318 |
o split initialise() into initialise_fixed() and initialise_varia() |
319 |
o introduced initialization file pSurfInitFile for free surface (cg2d_x) |
320 |
in new routine ini_psurf() |
321 |
|
322 |
checkpoint26 |
323 |
o moved some #ifdef in optional routines to encompass everything |
324 |
except the argument declarations. This was using up some memory. |
325 |
o fixed macros like _ADT to work with both versions of Linux cpp |
326 |
o cleaned up some unused and uninitialized variables |
327 |
(helps when debugging with strict compile options) |
328 |
o split up CPP_EEOPTIONS.h into options and macros |
329 |
(macros are now in eesupp/inc/CPP_EEMACROS.h) |
330 |
o patch for 2 processor JAM mode |
331 |
|
332 |
checkpoint25 |
333 |
o updates for OBCs and NH |
334 |
o dramatically reduced memory usage |
335 |
o added "JAM" routines for use on Artic network |
336 |
o parameterization of convection by implicit vertical diffusion |
337 |
o added a diagnostic of convective index |
338 |
o moved call to calc_divg_hat() from dynamics() to solve_for_pressure() |
339 |
(this is was partly for OBCs and NH but also in anticipation of |
340 |
an explicit free-surface option) |
341 |
o initial state input files for U and V |
342 |
|
343 |
checkpoint24 |
344 |
o Removed some spurious "REAL"s |
345 |
o Updated KPP to latest version from JPL |
346 |
o Added a COS(latitude) in horizontal viscosity |
347 |
|
348 |
checkpoint23 |
349 |
o Added del^4 diffusion for salt and temperature |
350 |
o Multiple minor fixes (implicit none's, arguments to global_sum, etc.) |
351 |
|
352 |
checkpoint22 |
353 |
o Made many small changes: implicit none, format(i5), etc... |
354 |
o Introduced KPP mixing scheme (compiles and runs but *not* tested) |
355 |
|
356 |
checkpoint21 |
357 |
o Introduced new I/O package that supports direct-access records (mdsio.F) |
358 |
o Split-up mid-level I/O routines |
359 |
o Updated input data for experiments 0,1,2,4 and 5 |
360 |
o Finally removed the genmake.* scripts (everyone seems happy with genmake) |
361 |
|
362 |
checkpoint20 |
363 |
o Tidied up open-boundaries some more |
364 |
o Added non-hydrostatic code |
365 |
o Fixed some input data |
366 |
o Modified MPI start-up to work in "coupled" context. |
367 |
|
368 |
checkpoint19 |
369 |
o Tidied up directory structure for verification experiments. |
370 |
o Added new code for open boundaries. |
371 |
o Corrected advective terms near boundaries. |
372 |
o Added CPP flag for "old UV" geometry and corrected spherical geometry. |
373 |
o Implemented free-slip/no-slip BCs and del^4 dissipation. |
374 |
o Split default parameters out of ini_parms.F into set_defaults.F. |
375 |
|
376 |
checkpoint18 |
377 |
o Further changes for optional code generation with |
378 |
CPP - ugh! |
379 |
|
380 |
checkpoint17 |
381 |
o Beginning to incorporating modularity |
382 |
for supporting atmos. and ocean configs. |
383 |
o Small changes for TAMC complinace |
384 |
o New ultra simple test case. Barotropic box |
385 |
configuration "exp0". |
386 |
|
387 |
checkpoint16 |
388 |
o Minor changes to exchange routines to support |
389 |
accumulation in reverse mode. Adjoint of an |
390 |
assignment is an addition. |
391 |
o Changes to support compilation by TAMC (LR(1) |
392 |
syntax) and by g77 under Linux ( 72 character |
393 |
limit ). |
394 |
|
395 |
checkpoint15 |
396 |
Rewrote exchange routines to allow |
397 |
o General tile <-> tile connectivity. |
398 |
o TAMC reverse mode flag ( is this really needed? ) |
399 |
o Variable width overlap and exchange region widths. |
400 |
o Hooks for sharing data via DMA, Arctic, Memory Channel, |
401 |
shmput/shmget, VIA, SYSV shmem and every other cool |
402 |
communication method. |
403 |
|
404 |
checkpoint14 |
405 |
Consistent isomorphism chages made. These allow dynamical core |
406 |
to support both pressure and meters as a vertical coordinate. |
407 |
|
408 |
checkpoint13 |
409 |
Release which corrects global_max problem and a couple |
410 |
of KGM time-averaging diagnostic errors. Also contains |
411 |
a double-gyre experiment setup as well as the baseline |
412 |
4 degree global template. The double gyre template is |
413 |
organised to allow it to be applied automatically to |
414 |
the baseline configuration. |
415 |
|
416 |
branch-point-rdot |
417 |
A few tidy-ups have been made bt the real point of this |
418 |
check-point (excuse the pun) is to allow a branch to be |
419 |
made for the purposes of adding the rDot alterations. |
420 |
I don't want to commit the rDot to the main-trunk until |
421 |
we've actually tested it... |
422 |
|
423 |
checkpoint12 |
424 |
Tidy up and added generic genmake script (formerly |
425 |
configure script). |
426 |
Released to testers. |
427 |
|
428 |
checkpoint11 |
429 |
Re-arranged initialise() and introduced ini_vertical_grid() |
430 |
and ini_masks_etc(). |
431 |
|
432 |
checkpoint10 |
433 |
Introduced the configure script. |
434 |
Separated out the diags package. |
435 |
Added template for writing time-averages of tile/intermediate quantities. |
436 |
Updated SIZE.h in exp2 and made the data big-endian. |
437 |
|
438 |
checkpoint9 |
439 |
MPI fix. Filename changes (meta/data). salbin*y stuff. |
440 |
General tidy-up. |
441 |
SST.bin SSS.bin added to verification/exp2 |
442 |
|
443 |
checkpoint8 |
444 |
Inludes time-dependant forcing and time-averaging. |
445 |
Works at 4x4 and 2.8125x2.8125 global |
446 |
|
447 |
checkpoint7-4degree-ref |
448 |
Branch from checkpoint7. Released for application to |
449 |
global modeling and general modeling - process studies, regional |
450 |
model etc.. |
451 |
Configured for verification/exp2 - 4 degree global, two process. |
452 |
|
453 |
checkpoint7 |
454 |
Created by cnh |
455 |
Simple 4 degree global simulation |
456 |
configuration. |
457 |
Includes climatological wind, |
458 |
hydrography, bathymetry etc |
459 |
Does not include Heat Flux and E-P |
460 |
|
461 |
checkpoint6 |
462 |
Created by cnh |
463 |
merged checkpoint5 with CD and |
464 |
spherical polar code. |
465 |
Still some problems with GM Redi |
466 |
abd full topography. |
467 |
|
468 |
checkpoint5 |
469 |
Created by AJA |
470 |
contains updates to GM Redi |
471 |
and reordered timestepping loop |
472 |
for Implicit Diffusion. |
473 |
|
474 |
checkpoint4 |
475 |
Created by cnh |
476 |
Contains memory saving macros ( _rdxc etc..) for when |
477 |
grid variations are limited. |
478 |
Contains polynomial coeffs for EOS and knudsen program |
479 |
for generation. |
480 |
|
481 |
checkpoint3 |
482 |
Created by cnh |
483 |
Added extra flags for runtime options |
484 |
Added this file |
485 |
Added implicit free-surface |
486 |
Added pre-conditioner |
487 |
Put compare01 into repository ( compare01/... ) |
488 |
Put data and eedata into repository ( verification/exp1 ) |
489 |
|
490 |
checkpoint2 |
491 |
Created by AJA |
492 |
Added GM/Redi |
493 |
|
494 |
checkpoint1 |
495 |
Created by AJA |
496 |
Restructured kloop in dynamics.F |
497 |
Added non-linear EOS |
498 |
|
499 |
baseline |
500 |
Original checked in code |