4 |
Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
5 |
============================== |
============================== |
6 |
|
|
7 |
|
o pkg/layers: |
8 |
|
- fix snap-shot output of layer thickness @ V.pt and output of pot.density |
9 |
|
- fix calculation of layer non-weighted velocity and layer probability |
10 |
|
- add diagnostics for pot.density used for layer averaging |
11 |
|
o pkg/seaice: |
12 |
|
- seaice_calc_viscosity.F: change computation of deltaC**2 to ensure |
13 |
|
positiveness, modify a few comments and improve variable names, |
14 |
|
- the changed computation of deltaC affects most seaice-related |
15 |
|
experiments at the truncation level. |
16 |
|
seaice_itd.thermo is affected by far the most, with |
17 |
|
only 7 digits of agreement remaining; update experiments. |
18 |
|
|
19 |
|
checkpoint65l (2015/05/04) |
20 |
|
o pkg/shelfice: |
21 |
|
- in shelfice_thermodynamics.F, if SHELFICEBoundaryLayer=.true., then set |
22 |
|
factor drKp1 to zero where it is negative (ie. do not use |
23 |
|
SHELFICEBoundaryLayer if hFacC>1) |
24 |
|
- the same for factor drLoc in shelfice_forcing.F |
25 |
|
o tools/genmake2: move FEXTRAFLAGS from FFLAGS to FOPTIM to avoid a problem |
26 |
|
with modules in ptracers, when using testreport option "-small_f" |
27 |
|
o pkg/seaice/seaice_growth.F (in case of SEAICE_ITD) |
28 |
|
- replace tmpscal1**1.36 by faster exp(1.36*log(tmpscal1)) |
29 |
|
o verification/testreport |
30 |
|
- add new option -small_f |
31 |
|
with this option testreport first makes the target small_f (*.f files) |
32 |
|
before running make (all). This is useful for explicit inlining when |
33 |
|
all sources need to be full available. |
34 |
|
o pkg/exf/exf_interp.F: |
35 |
|
remove previous changes related to reverse (decreasing) input grids latitude |
36 |
|
|
37 |
|
checkpoint65k (2015/04/01) |
38 |
|
o pkg/ecco: |
39 |
|
fix missing cosphi initialization; use eccoiter in place of optimcycle; |
40 |
|
if autodiff is not compiled then use READ_REC_XY_RL/READ_REC_XYZ_RL |
41 |
|
instead of active read/write |
42 |
|
o pkg/ctrl: |
43 |
|
if autodiff is not compiled then use READ_REC_XY_RL/READ_REC_XYZ_RL |
44 |
|
instead of active read/write. |
45 |
|
o pkg/autodiff: make autodiff_readparms.F and autodiff_whtapeio_sync.F |
46 |
|
return if .NOT.useAUTODIFF |
47 |
|
o pkg/seaice: add CPP brackets (cost function related). |
48 |
|
o model/src: |
49 |
|
add useAUTODIFF run time switch. |
50 |
|
o pkg/exf/exf_interp.F: |
51 |
|
add code to allow input grids with latitude starting in the north (i.e. when |
52 |
|
j=1 corresponds to northern edge of field); modify global_with_exf to test |
53 |
|
this feature. |
54 |
|
o verification/testreport: |
55 |
|
- replace "grep -A3" with POSIX conformal sed command, because there are |
56 |
|
implementations of grep that cannot do contextual searches |
57 |
|
- replace "cat -n" by "nl" (two occurrences), because not all implementations |
58 |
|
of "cat" have the option "-n" |
59 |
|
o model/src: |
60 |
|
add new file gsw_teos10.F that contains 3 functions, more or less a copy |
61 |
|
of the gsw_toolbox.f90 of the TEOS-10 fortran interface, that are used to |
62 |
|
convert from conservative to potential temperature. For now they are not |
63 |
|
called anywhere. |
64 |
|
o pkg/ggl90: make "useIDEMIX" useful |
65 |
|
- re-organize code in s/r ggl90_calc a little to move computations that |
66 |
|
are different for idemix into separate loops (changes verification |
67 |
|
experiment idemix at truncation level, 12 digits remain -> updated) |
68 |
|
- requires 2 new 2D fields KappaM, verticalShear |
69 |
|
- make hFacI and recip_hFacI local 3D variables that are passed to |
70 |
|
s/r ggl90_idemix |
71 |
|
- fix and improve some comments |
72 |
|
|
73 |
|
checkpoint65j (2015/02/25) |
74 |
|
o pkg/openad |
75 |
|
- synchronize seawater.F with version in model/src: replace routine |
76 |
|
body of sw_temp by calling sw_ptmp and fix/add a few comments. |
77 |
|
o pkg/mnc: |
78 |
|
- change default value of pickup_read/write_mnc params to FALSE |
79 |
|
(since few features are missing in reading MNC pickup files). |
80 |
|
o model/src: |
81 |
|
- change default (background) vertical diffusivity for salt to be the |
82 |
|
temperature (background) vertical diffusivity. |
83 |
|
- change background vertical diffusivity in vertical mixing pkgs ggl90, |
84 |
|
kl10, my82 and pp81 from temperature diffusivity to salinity diffusivity. |
85 |
|
This makes ptracers default diffusivity (that uses salt diffKr) more |
86 |
|
consistent with vertical mixing schemes. |
87 |
|
o verification/testreport: |
88 |
|
- fix typo in "-pcls" option ; |
89 |
|
- put temp files in /tmp (instead of in local dir) |
90 |
|
- add option "-ncad" to use genmake2 new option "-nocat4ad" |
91 |
|
- allow to use "-j" option (for multi-procs make) for AD, OAD and TLM. |
92 |
|
o pkg/ggl90 (idemix code): |
93 |
|
- apply few fixes ; add some missing "_d 0" ; update output of exp. |
94 |
|
global_ocean.90x40x15.idemix |
95 |
|
o OpenAD |
96 |
|
- enable active file I/O and begin removal of work-around code |
97 |
|
for OpenAD for handling control variables (memory vs. active files) |
98 |
|
- new CPP options file OPENAD_OPTIONS.h |
99 |
|
- revert to genarr2d gradient check for hs94.1x64x5 |
100 |
|
- (genarr3d tested by tutorial_global_oce_biogeo, tutorial_tracer_adjsens) |
101 |
|
- gentim2d works for halfpipe_streamice but not yet hs94.1x64x5 |
102 |
|
o tools/genmake2: |
103 |
|
- add option for an alternative Makefile (from Martin) where multiple |
104 |
|
source files are sent to TAF (instead of all in one file). |
105 |
|
o pkg/ggl90: add IDEMIX (Olbers and Eden, 2013) |
106 |
|
- code provided by Carsten Eden as an extension of ggl90 |
107 |
|
- so far the code is turned on within ggl90 by setting a CPP-flag at |
108 |
|
compile time; a runtime flag implementation is not yet complete |
109 |
|
- tested in new verification experiment global_ocean.90x40x15.idemix |
110 |
|
o verification: |
111 |
|
- reduce length of the AD test run by half for experiments |
112 |
|
global_ocean.cs32x15 (std + thsice) and isomip |
113 |
|
- enable active file I/O for OpenAD, adjust verifications accordingly |
114 |
|
- halfpipe_streamice: change gradient check from genarr2d to gentim2d |
115 |
|
o verification/testreport: |
116 |
|
- fix two non-POSIX sed statements so that there are no error messages |
117 |
|
on Mac OS X |
118 |
|
- replace hostname -s with hostname | sed 's/\..*$//' |
119 |
|
o model/src/seawater.F: |
120 |
|
- simplify SW_TEMP to just calling SW_PTMP with P and PR exchanged |
121 |
|
(following the matlab code), which would have avoided the bug caught |
122 |
|
by Matt (see below) in the first place |
123 |
|
o pkg/shelfice: |
124 |
|
- implement alternative discretisation of quadratic drag (selectBotDragQuadr) |
125 |
|
and true distance in no-slip BC (bottomVisc_pCell) similar to bottom-drag. |
126 |
|
- fix sign of friction tendency (no-slip BC) and fix u,v drag for thin |
127 |
|
ice-shelf case (i.e., within surface level). |
128 |
|
- add config summary in shelfice_check.F |
129 |
|
- remove global variable recip_SHELFICElatentHeat and replace by a local |
130 |
|
variable recip_latentHeat |
131 |
|
- introduce diagnostics for friction velocity uStar (in case of |
132 |
|
SHELFICEuseGammaFrict) |
133 |
|
- change verification experiment isomip.htd: |
134 |
|
+ start from pickup (as input_ad at nIter0=8640) |
135 |
|
+ start from SHELFICEmassFile instead of SHELFICEloadAnomaly file |
136 |
|
+ test SHELFICEuseGammaFrict = .TRUE. |
137 |
|
+ test SHELFICEadvDiffHeatFlux = .TRUE. |
138 |
|
o model/src: |
139 |
|
- fix bug (Thanks to Matt) in function SW_TEMP (to convert Pot.Temp to |
140 |
|
in-situ Temp) and in routine SW_TEMP (in pkg/openad); |
141 |
|
update output of experiments global_with_exf.yearly and isomip (all 6). |
142 |
o pkg/shelfice: |
o pkg/shelfice: |
143 |
- change setting of kTopC to also be zero where there is no ice-shelf. |
- change setting of kTopC to also be zero where there is no ice-shelf. |
144 |
|
- zero out surface forcing arrays (for now, for T & S + EmPmR) where |
145 |
|
ice-shelf is. |
146 |
|
- first attempt to get RealFreshWaterFlux effects: for now, only without |
147 |
|
SHELFICEboundaryLayer ; not consistent if using synchronous time-stepping. |
148 |
o pkg/seaice: add the option to prescribe a fixed thickness PDF |
o pkg/seaice: add the option to prescribe a fixed thickness PDF |
149 |
for thermodynamic calculations |
for thermodynamic calculations |
150 |
- because of divisions of the type 7/7 not exactly equal to 1, this change |
- because of divisions of the type 7/7 not exactly equal to 1, this change |