/[MITgcm]/MITgcm/doc/tag-index
ViewVC logotype

Diff of /MITgcm/doc/tag-index

Parent Directory Parent Directory | Revision Log Revision Log | View Revision Graph Revision Graph | View Patch Patch

revision 1.2040 by jmc, Wed Aug 6 23:19:25 2014 UTC revision 1.2064 by gforget, Sun Sep 14 21:52:03 2014 UTC
# Line 4  $Name$ Line 4  $Name$
4      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
5      ==============================      ==============================
6    
7    o pkg/ctrl/CTRL_GENARR.h, ctrl_readparms.F :
8     - add xx_genarr2d_bounds,xx_genarr3d_bounds,
9       xx_genarr2d_numsmooth, xx_genarr3d_numsmooth
10    o pkg/ctrl/ctrl_map_ini_genarr.F :
11     - remove compilation failure
12     - replace hard coded example
13     - use ctrl_map_ini_gen2D, 3D
14    o pkg/ctrl/ctrl_pack.F, ctrl_unpack.F :
15     - on/off switch based upon xx_genarr2d_weight,3d
16    o src/packages_init_variables.F :
17      - regroup pkg/estimation calls
18      - remove CTRL_MAP_INI, CTRL_MAP_INI_ECCO
19        (moved to ctrl_init_variables)
20    o cost/cost_init_varia.F :
21      - remove ecco_cost_init_varia
22        (moved to ecco_init_varia)
23    o ctrl/ctrl_init_variables.F :
24      - add CTRL_MAP_INI, CTRL_MAP_INI_ECCO
25      - add CTRL_MAP_INI_GENARR, SEAICE_CTRL_MAP_INI
26    o ctrl/ctrl_map_ini.F :
27      - remove ctrl_map_ini_genarr, seaice_ctrl_map_ini
28        (moved to ctrl_init_variables)
29    o ctrl/ctrl_map_ini_ecco.F :
30      - remove ECCO_PHYS (mv to ecco_init_varia)
31      - remove seaice_ctrl_map_ini (mv to ctrl_init_variables)
32    o ecco/ecco_ad_diff.list :
33      - add ecco_init_varia.f
34    o ecco/ecco_init_varia.F
35      - new routine
36    o pkg/streamice:
37      - move call to STREAMICE_INITIALIZE_PETSC from the_model_main.F
38        to streamice_init_fixed.F ; fix setting of STREAMICEisOn.
39      - from model/src, only call pkg/streamice routines if useStreamIce is TRUE.
40    o pkg/generic_advdiff:
41      - fix bug causing negatives in GAD_SMOLARKIEWICZ_HACK, introduced 8/8/2014.
42    o pkg/exf:
43      - exf_getffields.F : add xxg_atemp, xxg_aqh, xxg_swdown, xxg_lwdown,
44         xxg_precip capability
45      - exf_wind.F : no need for ALLOW_WSPEED_CONTROL cpp switch
46    o pkg/ctrl:
47      - ctrl_pack.F, ctrl_unpack.F : omit (un)packing of undefined xx_gentim2d
48    o model/src/load_fields_driver.F :
49      - move call to CTRL_MAP_GENTIM2D ahead of BULKF_FIELDS_LOAD, EXF_GETFORCING
50        so xx_gentim2d can be applied to e.g. exf fields in a timely manner.
51    o OpenAD verification experiments:
52      - Include explicitly AUTODIFF_OPTIONS.h, COST_OPTIONS.h, and CTRL_OPTIONS.h
53        in src files (to enable to skip the ECCO_CPPOPTIONS.h);
54        for now, only in pkgs used in OpenAD verification experiments.
55      - Change all except one (halfpipe_streamice) OpenAD experiments to use pkg
56        specific option file (AUTODIFF_OPTIONS.h, COST_OPTIONS.h & CTRL_OPTIONS.h)
57        instead of using ECCO_CPPOPTIONS.h (with all relevant options in it).
58        This applies to both TAF (*/code_ad/) and OpenAD (*/code_oad/) tests.
59    o OpenAD verification tests:
60      - finish removing ALLOW_AUTODIFF_OPENAD (replaced by ALLOW_OPENAD);
61      - finish replacing ALLOW_AUTODIFF_TAMC by ALLOW_AUTODIFF (except for
62        tape/storage which are specific to TAF/TAMC) in pkgs used in OpenAD exp.
63      - leave ALLOW_AUTODIFF_TAMC undef in OpenAD verification tests (*/code_oad/)
64        and remove local copy of "tamc.h" (needed only if ALLOW_AUTODIFF_TAMC).
65    o model/src & generic_advdiff:
66      - change hard-coded loop-range in S/R APPLY_FORCING_T/S to set T & S
67        forcing over 0:sNx+1, 0:sNy=1 (instead of just 1:sNx,1:sNy): Model
68        dynamics requires valid tracer forcing only over tile interior but, for
69        some diagnostics, may need to extend it over 1 point in tile halo region.
70      - in gad_calc_rhs.F, update calls to gmredi_x/ytransport to get valid
71        tendency over i,j_Min,Max range. This allows to simplfy i,j_Min,Max
72        setting in temp/salt/ptracer_integrate.F
73    o pkg/dic:
74      - multiply tracer tendencies by maskInC (if ussing OBCS) before updating
75        gchem tracers: this allows to skip the 2nd call to OBCS_APPLY_PTRACER
76        in gchem_forcing_sep.F
77    o pkg/autodiff & obcs:
78      - add storage of current OB values for U & V (was already done for T & S).
79    
80    checkpoint65c (2014/08/30)
81    o pkg/dic:
82      - take out of dic_atmos.F the initialisation part (corresponding to istate=0)
83        and move it to new S/R DIC_INI_ATMOS ; also simplify the dependencies for
84        AD compilers (but still a Pb with multi-threading and Ajoint dependencies).
85    o verification:
86      - new experiment testing OBCS and DIC pkgs, using params & output from
87        tutorial_global_oce_biogeo but limited to a sub-domain around Drake
88        passage: take OBCS from the last year of a 2 yrs simulation and initial
89        conditions from t=1.yr while keeping the same forcing.
90    o model/src:
91      - when allowFreezing=T, only reset below freezing initial Temp to Tfreezing
92        (at any k) if checkIniTemp is not set to FALSE (default checkIniTemp=T).
93    o pkg/diagnostics (Stats-Diags):
94      - re-write S/R DIAGSTATS_CALC (more similar to TARGET_NEC_SX part) to:
95        a) refine region where stats are computed, excluding where arrhFac=0 ;
96        b) fix missing interior mask (use with OBCS) in 3-D fields statistics;
97        c) extend regional stats over the region edges (for U or V pt location).
98    o pkg/gchem:
99      - add a (2nd) call to OBCS_APPLY_PTRACER in gchem_forcing_sep.F (needed since
100        pkg/dic is currently changing/updating ptracers values beyond the OB).
101    o verification (hs94):
102      - convert Held & Suarez external_forcing.F (from hs94.cs, with Sigma-coords
103        bits) to apply_forcing.F and undef USE_OLD_EXTERNAL_FORCING in experiments
104        hs94.cs-32x32x5 and tutorial_held_suarez_cs ; also use the same version of
105        apply_forcing.F in 2D hs94 (fwd, ad & oad) but keep LatLon hs94 unchanged.
106    o pkg/ptracers:
107      - implement Adams-Bashforth on pTracers (instead of on tracer tendency),
108        switched on by setting PTRACERS_doAB_onGpTr=F (default set to doAB_onGtGs)
109      - change exp4 secondary test (input.nlfs) to test AB on T & S & pTracer
110        with AB-2 code (so that it get tested).
111    o model/src:
112      - allow to apply Adams-Bashforth on Temp & Salt (instead of on gT,gS)
113        with AB-2 code (previously only available with AB-3 code).
114        Also move the code (call to ADAMS_BASHFORTH S/R) form thermodynamics.F
115        to temp/salt_integrate.F (since the 2nd part of gt/sNm1 update is done
116        there, by calling CYCLE_AB_TRACER).
117    o pkg/generic_advdiff:
118      - change Tracer argument (drop bi,bj indices) in S/R GAD_CALC_RHS,
119        GAD_C2_ADV_R, GAD_U3_ADV_R, GAD_C4_ADV_R, GAD_DIFF_R, GAD_BIHARM_R
120        + also in GMREDI_X/Y/RTRANSPORT ; and update corresponding calls in
121        S/R temp/salt/ptracers_integrate.F
122    o model/src & pkg/ptracers:
123      - remove common block variables gT,gS (in DYNVARS.h), except when
124         USE_OLD_EXTERNAL_FORCING is defined; update TAF storage accordingly.
125      - remove common block variable gPtr.
126    o model/src & pkgs:
127      - change gTracer (and/or tracer) argument (drop bi,bj indices) in S/R
128         ADAMS_BASHFORTH(2&3), CYCLE_(AB_)TRACER, FREESURF_RESCALE_G,
129         IMPLDIFF, SOLVE_TRIDIAGONAL & _PENTADIAGONAL, GAD_SOM_ADVECT,
130         GAD_ADVECTION, GAD_CALC_RHS, GAD_IMPLICIT_R, TIMEAVE_CUMUL_DIF_1T
131      + change accordingly all calling S/R.
132      - use local temperature/salinity/ptracer tendency array (without bi,bj)
133        in S/R temp/salt/ptracers_integrate.F
134    o pkg/seaice:
135      - move computation of stress contributions to rhsU/V in s/r seaice_lsr
136        to separate s/r seaice_lsr_rhsu/v in order to be able to re-use code
137      - make u/vIceC local variables if SEAICE_CGRID is defined only to be used
138        in seaice_lsr
139      - seaice_lsr.F: make local 4D arrays UXX, VYY, etc 2D
140        in s/r seaice_lsr_calc_coeffs
141    o pkg/mdsio:
142      - in MDS_READ/WRITE_FIELD, stop if file-name (+prefix) is too long
143        (e.g., > MAX_LEN_MBUF -90 ) or, in INI_MODEL_IO, if mdsioLocalDir is
144        too long (e.g., > MAX_LEN_FNAM/2 )
145    
146    checkpoint65b (2014/08/12)
147    o pkg/matrix:
148      - pass, as argument, updated tracer field to S/R MATRIX_STORE_TENDENCY_EXP
149    o model/src:
150      - fix initialisation of geothermalFile; compile geothermal-flux code in
151        natl_box verification experiment.
152    o model/src & pkg/down_slope:
153      - push the k loop inside S/R TIMESTEP_TRACER (now called outside the k loop).
154      - in dwnslp_apply.F, update tracer tendency instead of the future tracer
155        field and call S/R DWNSLP_APPLY before TIMESTEP_TRACER; this affects
156        results at machine truncation level: update output of experiments
157        global_ocean.90x40x15.dwnslp (FWD) and lab_sea.noseaicedyn (AD).
158    o pkg/diagnostics (Stats-Diags):
159      - do not cumulate the full volume when DIAGNOSTICS_FILL is
160        called with bibjFlg < 0 (no increment of the counter for 2D/3D diag);
161        This fix the mean statistics when DIAGNOSTICS_FILL is called multiple
162        times (but Min,Max and StD are still wrong).
163    o model/src:
164      - add geothermal flux forcing: read in ini_forcing.F as time-constant
165        field "geothermalFlux" applied in S/R APPLY_FORCING_T (apply_forcing.F)
166    o model/src:
167      - move CYCLE_TRACER calls from tracers_correction_step.F to temp/salt/ptracer
168        _integrate.F so that, when leaving S/R THERMODYANMICS, theta,salt and pTrac
169        arrays are already updated while adjustments (filters, conv.adjustment) are
170        still applied later, in S/R TRACERS_CORRECTION_STEP.
171  o model/src:  o model/src:
172    - store in common bloc array "rhoInSitu" the virtual potential temperature    - store in common bloc array "rhoInSitu" the virtual potential temperature
173      anomaly that is used to compute geopotential: this make the atmos code      anomaly that is used to compute geopotential: this make the atmos code
# Line 82  o model/src: Line 246  o model/src:
246    - collect T & S forcing tendency into local 2-D array (passed as argument to    - collect T & S forcing tendency into local 2-D array (passed as argument to
247      apply_forcing S/R); add 3-D diagnostics for temp & salt forcing tendency.      apply_forcing S/R); add 3-D diagnostics for temp & salt forcing tendency.
248      affects results at machine truncation level (e.g., ocean: if using      affects results at machine truncation level (e.g., ocean: if using
249      SHORTWAVE_HEATING and atmos:, if using FrictionHeating or (atm_Rq<>0)      SHORTWAVE_HEATING ; atmos: if using FrictionHeating or (atm_Rq<>0) moist
250      moist correction due to vertical advection).      correction due to vertical advection).
251    - update output of experiments: fizhi-cs-32x32x40 (13 digits),    - update output of experiments: fizhi-cs-32x32x40 (13 digits),
252      global_ocean.cs32x15 (fwd: icedyn, seaice, thsice, all 3 @ 11d; adm & tml:      global_ocean.cs32x15 (fwd: icedyn, seaice, thsice, all 3 @ 11d; adm & tml:
253      seaice_dynmix & thsice, fwd grd @ 3 & 8), hs94.1x64x5 (ad grd @ 13),      seaice_dynmix & thsice, fwd grd @ 3 & 8), hs94.1x64x5 (ad grd @ 13),
Legend:
Removed from v.1.2040  
changed lines
  Added in v.1.2064
  ViewVC Help
Powered by ViewVC 1.1.22