| 4 |
Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
| 5 |
============================== |
============================== |
| 6 |
|
|
| 7 |
|
o some cleaning: |
| 8 |
|
- pkg source files: ensure that all *.F files from each pkg included the |
| 9 |
|
corresponding ${PKG}_OPTIONS.h file (except stand-alone src file which |
| 10 |
|
only includes CPP_EEOPTIONS.h); fix S/R CTRL_SMOOTH ; update AD experiment |
| 11 |
|
code_ad/*.F src files; add new option-file in pkg/admtlm + corresponding |
| 12 |
|
includes; |
| 13 |
|
- model/src: add PACKAGES_CONFIG.h wherever ALLOW_AUTODIFF[_TAMC] is used. |
| 14 |
|
- ALLOW_DIFFKR_CONTROL: add a stop in S/R CTRL_CHECK in case ALLOW_3D_DIFFKR |
| 15 |
|
is undef; also define /DYNVARS_DIFFKR/ common block in DYNVARS.h when |
| 16 |
|
ALLOW_DIFFKR_CONTROL is defined, to allow to compile and reach this stop. |
| 17 |
|
- update option-file CPP_OPTIONS.h of all AD experiments: |
| 18 |
|
* no longer include PACKAGES_CONFIG.h ; |
| 19 |
|
* includes ECCO_CPPOPTIONS.h if PACKAGES_CONFIG.h has been included ; |
| 20 |
|
* def/undef ALLOW_3D_DIFFKR independently of ALLOW_DIFFKR_CONTROL (before |
| 21 |
|
including ECCO_CPPOPTIONS.h). |
| 22 |
|
o pkg/cost, pkg/ctrl, pkg/ecco option-file: |
| 23 |
|
- clean-up and split content of old pkg/ecco/ECCO_CPPOPTIONS.h file into |
| 24 |
|
separated pkg option-file (done according to old doc from ECCO_CPPOPTIONS.h, |
| 25 |
|
not necessary accurate). |
| 26 |
|
- add a template for option-file ECCO_CPPOPTIONS.h, mostly empty, in |
| 27 |
|
pkg/autodiff, i.e., the 1rst pkg to compile for adjoint built, with lines to |
| 28 |
|
deliberately break compilation (a remainder that it needs to be customized) |
| 29 |
|
- in pkg/ecco, includes ECCO_OPTIONS.h instead of COST_OPTIONS.h |
| 30 |
|
- rename COST_CPPOPTIONS.h to COST_OPTIONS.h |
| 31 |
|
- rename CTRL_CPPOPTIONS.h to CTRL_OPTIONS.h |
| 32 |
|
o tools/genamke2: |
| 33 |
|
- check for lapack. |
| 34 |
|
o pkg/cost and pkg/ecco : attempt to sort out some of the limiting intricacies. |
| 35 |
|
- pkg/cost.cost_final.F : allow for use of pkg/ecco and pkg/cost cost functions |
| 36 |
|
jointly. The exclusive ifdefs were removed, to add costs terms (when defined) |
| 37 |
|
from both packages. |
| 38 |
|
- the fc global sum in pkg/ecco/ecco_cost_final.F was removed accordingly. |
| 39 |
|
- for objf_atl we use either the pkg/ecco or the pkg/cost term depending on CPPs. |
| 40 |
|
- pkg/ecco and model/src : add CPP brackets around pkg/cost and pkg/ctrl includes |
| 41 |
|
of "CTRL_SIZE.h" "ctrl.h" "ctrl_dummy.h" "optim.h" / "cost.h" accordingly. |
| 42 |
|
o pkg/cost : add comments to explain special and/or untested setups. |
| 43 |
|
o pkg/exf: |
| 44 |
|
- use EXF_OPTIONS.h to set pkg/exf options except if done in ECCO_CPPOPTIONS.h |
| 45 |
|
(previously, ALLOW_AUTODIFF_TAMC was controling this switch). |
| 46 |
|
o verification/*/code_ad: |
| 47 |
|
mimimal cleaning of AD experiments ECCO_CPPOPTIONS.h option-file: |
| 48 |
|
- reccord when this file is included (define ECCO_CPPOPTIONS_H) |
| 49 |
|
- remove the most obvious obsolete features (e.g., #define ALLOW_COST not |
| 50 |
|
allowed since Oct 2003 in any option-file except in PACKAGES_CONFIG.h) |
| 51 |
|
o pkg/seaice : |
| 52 |
|
- added possibility to change ice strength/PRESS0 relationship to |
| 53 |
|
HEFF, according to the following run time parameters |
| 54 |
|
SEAICEpresPow0 :: HEFF exponent for ice strength below SEAICEpresH0 (integer, >0) |
| 55 |
|
SEAICEpresPow1 :: HEFF exponent for ice strength above SEAICEpresH0 (integer, >0) |
| 56 |
|
SEAICEpresH0 :: HEFF threshold for ice strength (m) |
| 57 |
|
o pkg/ggl90 : |
| 58 |
|
- added run time flag mxlSurfFlag to include the code that ensure |
| 59 |
|
mixing between first and second level (previously included as a comment) |
| 60 |
|
o verification/1D_ocean_ice_column/input_ad/data.autodiff : |
| 61 |
|
- add test of newly added dumpAdByRec=T option where |
| 62 |
|
we write all records to one file per variable. |
| 63 |
|
o verification/global_ocean.cs32x15/code_ad/CPP_OPTIONS.h : |
| 64 |
|
- switch to #define ALLOW_BALANCE_RELAX and ALLOW_BALANCE_FLUXES |
| 65 |
|
to check that this code is ok with taf and compiles in adjoint. |
| 66 |
|
o pkg/autodiff : |
| 67 |
|
- added run time param dumpAdByRec : ad dump format switch. |
| 68 |
|
If true then write all records to one file per variable. |
| 69 |
|
Else write one file per record (remains the default). |
| 70 |
|
- revise seaice_ad_dump.F and exf_adjoint_snapshots_ad.F accordingly. |
| 71 |
|
o pkg/seaice: |
| 72 |
|
- Added SEAICEuseTILT run time switch : if set to |
| 73 |
|
false then omit the tilt term in seaice dynamics. |
| 74 |
|
- Fix free drift calculation. |
| 75 |
|
o pkg/shelfice: |
| 76 |
|
When initializing SHELFICEDragQuadratic, set default to be |
| 77 |
|
consistent with shiCdrag in case SHELFICEuseGammaFrict is used, |
| 78 |
|
but retain option to set it independently |
| 79 |
|
(inconsistenty spotted by Veronique Dansereau) |
| 80 |
|
o eesupp/inc: |
| 81 |
|
- in EEPARAMS.h, add real-type constant for some frequently used simple number |
| 82 |
|
(0,1,2,1/2), with name explicitly referring to RS/RL type. |
| 83 |
|
o model/src: |
| 84 |
|
- move balancing of relaxation terms to new S/R balance_relax.F. |
| 85 |
|
o pkg/autodiff: |
| 86 |
|
re-write active I/O high-level (control) S/R: |
| 87 |
|
- rename S/R ACTIVE_READ/WRITE_RL to ACTIVE_READ/WRITE_3D_RL |
| 88 |
|
- add 1 more argument (useCurrentDir) to replace the "_LOC" 2nd set of S/R. |
| 89 |
|
- use standard pkg/mdsio I/O routines (MDS_READ/WRITE_SEC_XZ/YZ and |
| 90 |
|
MDS_READ/WRITE_FIELD); change loops to multi-threads. |
| 91 |
|
- update and merge active_file_control_slice.flow into active_file_control.flow |
| 92 |
|
- update the calls in lower level S/R (active_file.F, active_file_g.F and |
| 93 |
|
active_file_ad.F) keeping the argument list and function unchanged. |
| 94 |
|
- also update lower-level "_LOC" version (call same S/R with "useCurrentDir |
| 95 |
|
=.TRUE.") and remove high-level (control) _loc version (not called anymore). |
| 96 |
|
- new low-level active I/O routines, one for each type (RL/RS), for active var |
| 97 |
|
of various (XY,XZ,YZ) shape and level number (arguments: arrShape, myNr); |
| 98 |
|
fix ctrl_init_wet.F & ecco_cost_weights.F by calling the new S/R with the |
| 99 |
|
right type. |
| 100 |
|
o autodiff and RS=real*4: |
| 101 |
|
- call the right type (_RS instead of _RL) of S/R in few output S/R (pkg/exf |
| 102 |
|
ad-monitor and snapshots); disable arrType='RS' in mdsio_gl*.F ; |
| 103 |
|
- change argument type of 3-D mask argument to _RS to match type in the call |
| 104 |
|
(in seaice_cost*.F, ctrl_*_gen.F and *ctrl_bound.F); to be continued. |
| 105 |
|
o pkg/thsice: |
| 106 |
|
- re-anable balanceEmPmR when useSEAICE=T with useThSIce=T. |
| 107 |
|
- option to correct ocean fresh-water flux for imbalance of Atmos+Land |
| 108 |
|
fresh-water flux: uniform correction or proportional to local precip. |
| 109 |
|
o pkg/ctrl: |
| 110 |
|
- new header file CTRL_SIZE.h for parameters maxCtrlArr2D, maxCtrlArr3D |
| 111 |
|
- redefine CPP option ALLOW_BOTTOMDRAG_CONTROL to |
| 112 |
|
ALLOW_BOTTOMDRAG_CONTROL_NONGENERIC |
| 113 |
|
- verification/hs94.1x64x5/ tests ALLOW_GENARR{2D,3D}_CONTROL |
| 114 |
|
|
| 115 |
|
checkpoint63q (2012/07/30) |
| 116 |
|
o pkg/autodiff: |
| 117 |
|
note about monitor and snap-shot of ad-variables: |
| 118 |
|
a) need to apply ADEXCH before monitor or output of ad-vars to include |
| 119 |
|
overlap contributions (was done for adjDump but missing for monitor). |
| 120 |
|
b) since ADEXCH implies adding overlap values to interior array, machine |
| 121 |
|
truncation error is expected when adding an ADEXCH call in the middle of |
| 122 |
|
the time-stepping (although mathematically identical). |
| 123 |
|
modifs: |
| 124 |
|
- fix some incorrect type (RL/RS, UV/scalar) in ADEXCH calls and ad-vars |
| 125 |
|
declaration (adEddyPsiX,adEddyPsiY in adcommon.h). |
| 126 |
|
- add new run-time params (dumpAdVarExch & mon_AdVarExch) to select how to |
| 127 |
|
apply ADEXCH before monitor or snap-shot of ad-variables: |
| 128 |
|
=0 : no ADEXCH ; =1 : do ADEXCH ; =2 : apply ADEXCH on a local copy. |
| 129 |
|
- implement new method (copy+adexch) for snap-shot and monitor of main model |
| 130 |
|
ad-vars (initially not used by default -> output unchanged). |
| 131 |
|
- change default (set to 2) to use new method and update few output_adm.txt |
| 132 |
|
with accurate ad-monitor (global_ocean.90x40x15, tutorial_global_oce_biogeo |
| 133 |
|
and both tutorial_tracer_adjsens tests). |
| 134 |
|
- switch 2 global_ocean.cs32x15 AD-tests to AB-2 (seaice_dynmix & thsice) |
| 135 |
|
and turn off momDissip_In_AB in the 2 other (needed for stable AB-3). |
| 136 |
o pkg/ctrl: |
o pkg/ctrl: |
| 137 |
enable the use of a variable number (maxCtrlArr2D, maxCtrlArr3D) of |
enable the use of a variable number (maxCtrlArr2D, maxCtrlArr3D) of |
| 138 |
generic control variables via |
generic control variables via |
Parent Directory
| 
Revision Log
| 
Revision Graph
| 
Patch