/[MITgcm]/MITgcm/doc/tag-index
ViewVC logotype

Diff of /MITgcm/doc/tag-index

Parent Directory Parent Directory | Revision Log Revision Log | View Revision Graph Revision Graph | View Patch Patch

revision 1.1711 by jmc, Thu Aug 9 20:36:11 2012 UTC revision 1.1932 by jmc, Sun Oct 20 21:39:32 2013 UTC
# Line 4  $Name$ Line 4  $Name$
4      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
5      ==============================      ==============================
6    
7    checkpoint64p (2013/10/20)
8    o pkg/autodiff:
9      - adread_adwrite.F: when type and length do not match ALLOW_AUTODIFF_WHTAPEIO
10        criteria, return to simple (default) tape IO format.
11    o pkg/mdsio (+ eesupp/src):
12      - rewrite/simplify tape-IO S/R (new S/R MDS_READ/WRITE_TAPE replace
13        previous MDSREAD/WRITEVECTOR) with 2 array argument from each type (R4/R8);
14      - fix globalFile and singleCpuIO options using simpler global mapping.
15      - new pairs of scatter/gather vector S/R (one for each type, generated from
16        template) corresponding to simpler global mapping.
17      - adread_write.F: switch to new S/R (but leave old calls commented) and write
18        to globalFile when parameter globalFiles is set to True.
19      - switch on useSingleCpuIO in AD experiments: global_ocean.90x40x15 & isomip.
20    o pkg/autodiff:
21      - adread_adwrite.F: add a hack for RS arrays (when RS=real*4);
22        with ALLOW_AUTODIFF_WHTAPEIO defined, since corresponding (real*4) is
23        missing, just add a STOP if array type do not match.
24    o pkg/exf:
25      - to allow to use seaice-fraction from pkg/exf in other pkgs than pkg/seaice:
26         rename CPP option EXF_ALLOW_SEAICE_RELAX to EXF_SEAICE_FRACTION
27         and rename array obsSIce to exf_iceFraction.
28    o tutorial_deep_convection:
29      - add 1rst version of isotropic 3-D Smagorinsky code (from Louis-Philippe),
30        for now all in this exp. code dir.
31      - add secondary test using Smag-3D viscosity (keep very low backgroud visc for
32        testing) and flux-limter advection scheme for Temp. (no explicit diffusion).
33    o eesupp/src:
34      - added SINGLE_DISK_IO option because reading of parameter files on
35        very large number of processors did not work with existing set-up
36    
37    checkpoint64o (2013/09/25)
38    o pkg/atm_phys & atm_compon_interf:
39      - allows for coupling of gray-atmosphere (atm_phys) with ocean.
40    o tools/build_options:
41      - switch from "-fPIC" to "-mcmodel=medium" in optfiles: linux_amd64_gfortran
42        & linux_amd64_ifort11 and in linux_amd64_g77 & linux_amd64_open64 also
43        remove CPP setting (was identical to genmake2 default).
44    o pkg/gmredi & model/src: Some updating and work done on the residual model.
45      - created new file model/src/calc_eddy_stress.F to calculate the eddy stress.
46      - fixed up the calculation of the eddy stress and how it is added to the
47        external forcing via taueddy_external_forcing.F
48      - at the moment, it is very experimental and only works with the variable eddy
49        diffusivity calculated in gmredi_k3d.F
50    o pkg/seaice/seaice_check.F: add a check to catch the case of specifying
51        lw/swfluxfile instead of lw/swdownfile in data.exf together with pkg/seaice
52    o testreport (& tools/do_tst_2+2):
53      - for MPI test, set default COMMAND to 'mpirun -v -np TR_NPROC ./{executable}'
54    o tools/build_options: linux_amd64_gfortran & linux_amd64_ifort11:
55      - remove CPP='cpp -traditional -P' (this is genmake2 default)
56      - add switch (for big setups) to use 'medium' memory-model (but leave it
57        commented out for now). Note: needed with FC 19 to compile big setups.
58    o pkg/atm_compon_interf:
59      - regroup per field origin (model & pkgs) the coupling storage routines
60         (which accumalate in time each coupling field)
61      - move bi,bj loops inside atm_store_my_data.F and store also wind-stress;
62        update accordingly + simplify aim_do_physics.F
63    
64    checkpoint64n (2013/08/26)
65    o pkg/bbl:
66      - update formulation to reduce dispersion of tracer properties in bbl
67      - replaced horizontal and vertical transport parameters with velocities
68      - changes results for verification/global_with_exf.yearly
69    o verification/halfpipe_streamice:
70      - change to matrix construction; update both Fwd & AD output.
71    o verification/tutorial_tracer_adjsens:
72      - OpenAD test: switch to vector-invariant momentum since fluxform with
73        rStar causes problems with OpenAD; update output.
74    o tools:
75      - genmake2: define a common prefix for all temp-file names ; move them
76        to local /tmp disk (but would be easy to move them back);
77      - xmakedepend: apply the same switch for temp-files.
78    o pkg/offline:
79      - changes for use with rStar (NLFS): assume that we continue to provide
80        UVELMASS/hFacW_ini & VVELMASS/hFacS_ini (hFacWi,S_ini as written in grid
81        output files) and apply r* scaling at each time-step (function of the time
82        varying Eta field); use normal pickup files (needed for restart with NLFS).
83    o adjoint with OpenAD:
84      - move OpenAD-specific files from verification/OpenAD/code_oad_all to a new
85        package openad.  This package has to be compiled for all runs with OpenAD
86        instead of specifying code_oad_all as a modification directory.
87      - link the fortran templates from tools/OAD_support to the build directory
88        for preprocessing to avoid conflicts between different setups compiled
89        simultaneously and simplify cleanup.
90    o pkg/exf:
91      - in exf_getforcing.F: comment out most of the EXCH calls (fields used by
92        main model or other pkgs are exchanged in EXF_MAPFIELDS).
93    o model/src:
94      - do_stagger_fields_exchanges.F: skip EXCH calls when using pkg/offline
95        (similar to do_fields_blocking_exchanges.F).
96    o tools/genmake2:
97      - remove TAF output src code just before calling staf (when not doing a fresh
98        built, will stop if things go wrong with staf).
99      - fix target "adobj" (left from TAF version-2 transition)
100    o pkg/diagnostics:
101      - add a parameter to track the status of pkg/diagnostics activation;
102        this replace/extend the use of logical param "settingDiags" (to check
103        when adding diag to the list) to also check any DIAGNOSTICS_[]FILL* call.
104        New S/R to print error message and stop when pkgStatus is not right.
105      - to try: add a warning when "data.diagnostics" exist but useDiagnostics=F.
106    
107    checkpoint64m (2013/08/13)
108    o model/inc:
109      - move FCORI_MACROS.h from PARAMS(_MACROS).h to GRID_MACROS.h (left from
110        8 yrs ago modif when Coriolis arrays were moved from PARAMS.h to GRID.h)
111    o pkg/kpp & aim_v23:
112      - only call DIAGNOSTICS_FILL when useDiagnostics=TRUE.
113    o pkg/seaice:
114      - restore (last time on 2011/12/24) ability to compile pkg/seaice with
115        undefined pkg/exf ALLOW_ATM_TEMP or ALLOW_RUNOFF CPP-options.
116      - only call DIAGNOSTICS_FILL when useDiagnostics=TRUE.
117    o eesupp/src:
118      - fix check for overlap-size argument (myOLn.GT.MAX_OLY_EXCH)
119        in exch1_rx[_ad].template (thanks to Francois Lefeuvre report).
120    o switch to TAF version-2:
121      - add flow directives to "freeze" naming convention for ad-routines that
122        are used in I/O routines of adjoint state and associated common blocks
123        that are used in adcommon.h (backward compatible with version-1)
124      - update all ad-optfiles (in tools/adjoint_options + few local to some
125        verification exp) to switch to latest TAF version (currently 2.5.5);
126        merge "*_mpi" adoptfiles into the corresponding non-mpi (but commented
127        out except for diva).
128      - the major change with TAF version-2 is that both the differentiated
129        routines and the forward routines (new) are returned as part of the TAF
130        output source code. Update genmake2 accordingly.
131      - new output for AD experiment tutorial_global_oce_biogeo (better AD gradient
132        with version-2 when compared to TLM or FWD gradient); other experiments
133        output show minor changes (machine truncation level); update the few AD &
134        TLM output with 12 matching digits only (some prior to version-2 switch).
135    
136    checkpoint64l (2013/08/05)
137    o model/src:
138      - in dynamics.F, skip the call to CALC_VISCOSITY if momViscosity=F
139      - main_do_loop.F: no longer includes additional (AUTODIFF) header files
140        when using TAF but only if using OpenAD.
141    o pkg/mom_common+fluxform+vecinv:
142      - always set horiz. viscosity arrays to background value before calling
143        MOM_CALC_VISC (in MOM_FLUXFORM & MOM_VECINV) and call S/R MOM_CALC_VISC
144        only when using variable horiz. viscosity (useVariableVisc=T);
145      - simplify mom_vecinv.F (only 1 block for momViscosity).
146    o pkg/mom_common: variable horiz. viscosity in NH code
147      - move horiz-viscosity 3-D arrays viscAh_W & viscA4_W (used in calc_gw.F)
148        from model/inc/NH_VARS.h to pkg/mom_common/MOM_VISC.h
149      - store in common block (in MOM_VISC.h) logical parameters: useHarmonicVisc,
150        useBiharmonicVisc & useVariableVisc.
151      - fix old bug (already in 1rst implementation of variable horizontal viscosity
152        in calc_gw.F, version 1.27, 2006/06/20):
153        horizontal bi-harmonic viscosity in gW was missing when wiscA4W=0
154        even if variable bi-harmonic viscosity (e.g., viscA4Grid) was non-zero.
155      - change background horiz viscosity in vertical momentum (gW) to always be
156        viscAhW,viscA4W (instead of switching to viscAhD, viscA4D when using
157        any type of variable viscosity, e.g., viscAh/4Grid)
158      - change default value of viscAhW,viscA4W to viscAhD,viscA4D (instead of
159        viscAh,viscA4) which default to viscAh,viscA4 :  this avoid missing
160        horiz. viscosity in W eq when just setting viscAhD/Z,viscA4D/Z (since
161        default viscAh,viscA4 is zero).
162    o model/src:
163      - extend length of drC & recip_drC from Nr to Nr+1.
164    o Divided Adjoint (DIVA) with MPI:
165      - genmake2: do not create local ./mpi_headers dir when no file to copy into.
166      - remove option ALLOW_DIVIDED_ADJOINT_MPI (replaced by ALLOW_DIVIDED_ADJOINT
167        and ALLOW_USE_MPI) from model/src code and from ECCO_CPPOPTIONS.h.
168    
169    checkpoint64k (2013/07/23)
170    o tools/OAD_support:
171      - avoid the need for file "oadtempflile" in insertTemplateDir.bash
172        and remove it from genmake2.
173    o tools/build_options:
174      - remove MPI_HEADER_FILES_INC setting (no longer used) and comment out
175        MPI_HEADER_FILES list (let genmake2 find the missing headers)
176    o verification/halfpipe_streamice:
177      - change to driving stress formulation; update both Fwd & AD output.
178    o tools/genmake2 and Divided Adjoint with MPI:
179      - remove default setting of MPIINCLUDEDIR from $MPIHOME (always been broken);
180      - only create local ./mpi_headers dir if using MPI and MPIINCLUDEDIR is set;
181      - add new variable (LOCAL_MPI_HEADERS, replace MPI_HEADER_FILES_INC) in
182        Makefile, which is set by genmake2, and check which mpi-headers are needed.
183        Note: need to update adjoint_options/adjoint_diva_mpi accordingly.
184      - update target "CLEAN" (to also remove ./mpi_headers/ dir).
185    o testreport:
186      - changes for Divided Adjoint Run: when file "run_ADM_DIVA" is present,
187        perform additional runs (number of additional runs is "add_DIVA_runs" taken
188        from file run_ADM_DIVA ; should match "nchklev_3" in file "code_ad/tamc.h").
189    o verification/lab_sea (AD test):
190      - change to test Divided Adjoint Run in this set-up (both standard AD test
191        and 2 secondary AD test: noseaice + noseaicedyn); drop the evp AD test.
192    o pkg atm_ & ocn_compon_interf:
193      - remove cpl_earlyExpImpCall=F option (was mainly a hack added for the old
194        staggerTimeStep implementation) and disable (retired) corresponding
195        parameter.
196    o pkg/offline:
197      - comment out unused field-array: ICEM, ConvectCount, hflx[01], icem[01];
198      - add S/R OFFLINE_CHECK to print offline parameter summary
199        and stop if loading a file that is not used;
200      - enable to calculate GMRedi tensor, KPP mixing and convective index
201        when the corresponding file(s) is/are not specified (but pkg is used).
202      - comment out resetting of monitorFreq (to endTime) since it still useful
203        for monitoring CFL numbers and checking offline fields.
204    o OpenAD:
205      - do not define OAD_DEBUG (in tools/adjoint_options/adjoint_oad) to get
206        smaller standard output) and generate new (smaller) output (on baudelaire
207        using gfortran with -ieee) for exp. tutorial_tracer_adjsens
208    o model/src:
209      - call EXTERNAL_FORCING_SURF outside bi,bj loops (in do_oceanic_phys.F),
210        (where external_forcing_adjust was called) and change list of arguments;
211      - merge external_forcing_adjust.F into external_forcing_surf.F
212      - put surface relaxation of SST & SSS in new S/R (forcing_surf_relax.F)
213        which also contains balancing surface relaxation (ALLOW_BALANCE_RELAX,
214        previously in file "balance_relax.F", now removed); remove corresponding
215        arrays in FFIELDS.h.
216      - EXTERNAL_FORCING_SURF is now called when using pkg/offline; implement
217        a hack for getting back surfaceForcingS (loaded from file) when using
218        ALLOW_OLD_VIRTUALFLUX (pkg/dic, in DIC_OPTIONS.h) in offline set-up.
219      - update output of AD test experiment global_ocean.cs32x15.seaice_dynmix
220        (was getting only 11 digits for AD-grad, due to different truncation
221         error in AD code).
222    
223    checkpoint64j (2013/07/04)
224    o pkg/offline:
225      - to enable the use of other features with pkg offline (e.g., obcs),
226        also call S/R DO_OCEANIC_PHYS in offline run - more modifs to come.
227      - comment out "allowFreezing" (now active) in 2 offline testing exp.
228    o pkg/exf ALLOW_RUNOFTEMP
229      - fix sign and make compatible with temp_EvPrRn .NE. UNSET_RL
230      - ahdded RUNOFTEMP test to verification/global_ocean.cs32x15/input.seaice
231      - changes verification/global_ocean.cs32x15/results/output.seaice.txt
232    o pkg/atm_phys:
233      - allows to add some damping on uVel,vVel (strength only function of k).
234    o verification, ad-tests:
235      - reduce length of the simulation for AD test: global_ocean.cs32x15.seaice,
236        global_ocean_ebm and offline_exf_seaice.thsice.
237    o verification/halfpipe_streamice:
238      - found a bug in s/r pkg/streamice/streamice_advect_thickness which caused
239        flux input boundary conditions to be ignored; a fix for this bug changed
240        verification results for forward test.
241      - add adjoint test.
242    o pkg/ptracers:
243      - allow to restart without SOM pickup (resetting SOM to zero).
244    o pkg/gmredi:
245      - New parameterisation for the calculation of K and (GM_PsiX,GM_PsiY) added.
246      - It uses mixing length theory and suppression by steering level effects to
247        calculate a diffusivity used in the Redi tensor (see Bates et al., submitted
248        to JPO, for more details).
249      - It also uses the diffusivity to calculate an eddy induced streamfunction
250        based on a PV closure (rather than a buoyancy closure as in GM).
251      - New files added to pkg/gmredi:
252        gmredi_k3d.F calculates the diffusivity for the Redi tensor and the eddy
253          induced overturning streamfunction (called from gmredi_calc_tensor)
254        gmredi_calc_eigs.F calculates the eigenvalues and eigenvectors required
255          for use in gmredi_k3d
256        gmredi_calc_urms.F calculates the the rms eddy velocity used to calculate
257          the eddy diffusivity
258    
259    checkpoint64i (2013/06/18)
260    o pkg/cheapaml:
261      - take src files from MITgcm_contrib/verification_other/offline_cheapaml/code
262        that enable the use of seaice (pkg/thsice thermo & pkg/seaice dynamics)
263        with pkg/cheapaml.
264    o utils/python: add subpackage for cubed sphere function, first example is
265        simple cs.pcol to plot 2D fields on a map
266    o pkg/streamice:
267      - This is a new package in MITgcm, which solves dynamic equations for ice
268         sheets and ice streams
269      - At the moment it is independent of atmosphere/ocean dynamics, or any
270        other physical packages in MITgcm, even ShelfIce (although it is anticipat-
271        ed that this will change)
272      - There is a new verification exercise that tests it, halfpipe_streamice,
273        evolves a 40x80 km ice stream/ice shelf (at coarse resolution) in a
274        rectangular embayment
275      - halfpipe_streamice is forward-only for now, will have TAF test soon
276      - for questions, email dgoldber@mit.edu
277    o pkg/thsice:
278      - fix filling of snow-precip diagnostic (SIsnwPrc) (left from the removing
279        of snowPrc from common bloc, on May 2nd, thsice_step_fwd.F revision 1.40);
280      - remove diagnostics 'SI_FrcFx' ( now identical to 'SI_Fract' with new
281         call sequence: ice-Thermo(thsice),ice-Dyn,ice-Advect );
282      - allow precip from pkg/cheapaml to make snow over seaice.
283    o pkg/cfc:
284      - move in separated header file (CFC_ATMOS.h) time-serie arrays of Atmos CFC
285      - remove atmos CFC 2-D arrays from common bloc (now local variables)
286      - change some hard-coded constant to run time parameter for reading and
287        and interpolating atmospheric CFC ; keep same default as previously.
288      - more flexible reading of Atmos CFC (number of records no longer hard-coded)
289      - put arguments in standard order: myTime, myIter, myThid
290      - use standard S/R GET_PERIODIC_INTERVAL for time interpolation of
291        atmospheric CFC ; fix for the case myIter < PTRACERS_iter0.
292      - fix calculation of surf tendencys for partial-cell and/or Non-Lin Free-Surf
293      - new routine to print summary of CFC params and check for consistency.
294    o pkg/seaice: add uice/vice to the parameter list of s/r seaice_advdiff,
295      similar to thsice_advdiff.
296      Note that for the B-grid case the routine parameters uc/vc are overwritten.
297    o pkg/cfc:
298      - change time interpolation for atmospheric CFC-11 (now same as for CFC-12);
299        update output (CFC-11) of experiment cfc_example and tutorial_cfc_offline.
300      - fix interpolation of atmphspheric CFC between Sorthern and Northern
301        hemisphere value.
302    o pkg/seaice:
303      - allow to use seaice dynamics without pkg/exf (e.g., using pkg/cheapaml)
304    o pkg/seaice: add Adams-Bashforth2 time discretization for ice dynamics;
305                  so far only for JFNK-solver, turn on with SEAICEuseAB2 = .TRUE.
306      - requires an additional time level that is stored in the pickup
307      - you can start with AB2 from a pickup without this time level with
308        pickupStrictlyMatch = .false.
309    
310    checkpoint64h (2013/05/26)
311    o pkg/cheapaml:
312      - replace one ()**.5 with SQRT + use temp var "cdu = tau/Du" (coare3_flux);
313        affect machine truncation (but exp cheapAML_box still pass with 13 digits).
314      - consistent treatment of uWind,vWind location: assume everywhere in
315        pkg/cheapaml that they are on C-grid (@ uVel,vVel location)
316        (Note: was already the case for Tair,Qair advection);
317        add option (INCONSISTENT_WIND_LOCATION) to recover old results.
318      - compute diabatic forcing only in the interior (excluding overlap regions)
319      - fill in array "Qsw" (for short-wave heating);
320      - add diagnostic for precip ; fill-in diagnostics for cheapAML state vars
321        before any update (consistent with MITgcm state var diagnostics);
322      - cheapaml_fields_load.F & cheapaml_init_varia.F : only fill outer edges if
323        non periodic ; + adjusted for uWind,vWind (C-grid).
324    o pkg/seaice:
325      - remove dependence of pkg/seaice versus pkg/exf (file: pkg/pkg_depend) and
326        add explicitly pkg/exf in experiments that currently use pkg/seaice.
327      - allows to compile pkg/seaice without pkg/exf.
328    o tools/OAD_support:
329      - use a local copy (ourRWCPinBd) to ensure index ourRWCP stays within bounds
330        of array "ourStepOf" in function rvNextAction (revolve.F90).
331    o pkg/aim_compon_interf renamed to pkg/atm_compon_interf
332      - change pkg name (to be used with other atmospheric physics pkg)
333        but by-pass CVS when making the new pkg so that we keep the CVS history.
334    o pkg/offline:
335      - call OFFLINE_FIELDS_LOAD from pkg/offline/offline_init_varia.F
336        (previously called from pkg/dic_surfforcing_init.F)
337    o model/src:
338      - re-order sequence of calls within packages_init_variables.F, using
339        standard order, except for:
340         DIAGNOSTICS_INIT_VARIA and OFFLINE_INIT_VARIA (called @ the top),
341         CTRL_MAP_INI and OBCS_INIT_VARIABLES (called @ the bottom)
342    o new pkg: atm_phys
343      - add entry point and source code (previously in contrib
344          verification_other/atm_gray/code_gray/) for new pkg "atm_phys"
345        (atmospheric physics pkg from P. O'Gorman and T. Schneider, JCl, 2008).
346      - re-order sequence of calls within packages_readparms.F,
347         packages_init_fixed.F and packages_write_pickup.F
348        (but skip packages_init_variables.F because of TAF issues).
349      - update contrib/*/atm_gray/ experiment.
350    o pkg/seaice (ITD code):
351      - simplify and fix the writing of pickup-files for ITD case
352    o pkg/seaice (ITD code):
353      - introduce floe size dependent lateral melt for ITD case;
354      - cleaning (avoid division by zero, change to f77 syntax, remove tabs)
355      - update seaice_itd experiment main output.
356    o pkg/thsice:
357      - remove snowPrc from common block THSICE_FLUX, in THSICE_VARS.h and
358        declared it locally (without bi,bj) in thsice_main.F & aim_do_physics.F;
359        changed accordingly pkg/atm2d.
360    
361    checkpoint64g (2013/05/01)
362    o pkg/exf ALLOW_RUNOFTEMP
363      - if defined,  river and glacier runoff temperature can be read-in from
364        runoftempfile; runoftempfile needs to have same format as runofffile
365    o pkg/thsice (& pkg/bulk_force):
366      - In case Energy-Reference-Level (ERL) is used (temp_EvPrRn=0), account
367        for energy content of Precip + RunOff & Evap (like with pkg/exf).
368      - change computation domain to always be the interior (without overlap).
369      - fix bug (wrong overlap) when using EXF and stressReduction > 0.
370    o verification/tutorial_global_oce_biogeo:
371      - add preliminary OpenAD setup (still has problems)
372    o pkg/seaice:
373      - turn some parameters for choosing the convergence criterion of
374        the inexact Newton method (JFNK) into runtime parameters for convenience
375      - clean up seaice_calc_viscosities.F: remove/retire two options for
376        SEAICetaZmethod (1,2), introduce area weighting for method 3; this changes
377        the results of lab_sea/input because a division has been replaced by
378        a multiplication with the reciprocal (sumNorm)
379      - modify offline_exf_seaice/input.dyn_jfnk/data.seaice to improve
380        convergence of solver (changes results, of course), and to test some
381        new features
382    o model/src:
383      - remove unused (since Aug 2006) S/R SET_WRITE_GLOBAL_PICKUP and its call.
384      - remove unused forcing field "dQdT" and associated parameter "dQdTFile".
385      - move forcing adjustment (balancing surface forcing) in specific S/R
386        where might also be applied exchanges (if needed) to forcing arrays.
387    o pkg/shelfice:
388      - allow to specify the Ice-Shelf mass per unit area (instead of
389        shelficeLoadAnomaly) and do the conversion from one to the other
390      - move loading from file of shelficeLoadAnomaly from SHELFICE_INIT_VARIA
391        to SHELFICE_INIT_FIXED: (a) avoid some TAF recompution issues and
392        (b) will be loaded in time (before calling INI_PRESSURE) in case it is
393        needed in phi0surf for initial pressure calculation when useDynP_inEos_Zc
394      - update isomip experiment forward output (get machine truncation error
395        from conversion shelficeLoadAnomaly -> shelficeMass -> shelficeLoadAnomaly)
396    o verification/offline_exf_seaice:
397      revise data.seaice in input.thermo and input_ad and update results accordingly
398        HO = 0.2, SEAICE_areaLossFormula = 2,
399        SEAICE_growMeltByConv = .TRUE.,
400        SEAICE_doOpenWaterMelt = .TRUE.,
401      Improve consistency with input.thsice and fix the spurious 500m ice corners
402    o verification/global_ocean.cs32x15:
403      - set Energy Reference Level to liq. water @ 0 degC: temp_EvPrRn=0.,
404        in icedyn (thsice+seaice-dyn) test and update output.
405    o verification/offline_exf_seaice:
406      - adjust list of tested variables (with testreport) and update
407        standard test output with better slection of monitored fields.
408    o pkg/cd_code:
409      - swtich off Adams-Bashforth on the 1rst iteration. Update output of
410        experiment lab_sea.hb87
411    o tools/genmake2:
412      - change default makedepend from the system default to tools/xmakedepend:
413        When no makedepend is specified, select tools/xmakedepend it the test pass,
414        otherwise select the system default (if exist and pass the test) or
415        try to build cyrus-makedepend ; stop if none of the 3 works.
416    o pkg/exf & pkg/thsice:
417      - In case Energy-Reference-Level (ERL) is used (temp_EvPrRn=0), account
418        for energy content of Precip + RunOff & Evap. Assumes:
419       1) Rain has same temp as Air.
420       2) Snow has no heat capacity (consistent with seaice & thsice pkgs)
421       3) Run-Off comes at the temp of surface water (with same Cp)
422       4) Evap over ocean is released to the Atmos @ surf-temp (=SST); should be
423        put directly into Latent Heat flux & should use water-vapor heat capacity.
424       5) Evap over snow/seaice (pkg/thsice) assumes constant Lf+Lv (consistent
425        with snow having no Cp) => water vapor is released to Atmos @ 0^oC (=ERL).
426    o pkg/seaice: simplify the use of CPP flags in JFNK-related files
427        (compile when SEAICE_ALLOW_JFNK is defined)
428    o pkg/thsice:
429      - fix oceanic flux diagnostics & timeave (left from new sequence of calls
430        implementation): move THSICE_AVE call after the advection (called directly
431        from thsice_do_advect.F).
432    o verification/global_ocean.90x40x15 and OpenAD:
433      New experiment for OpenAD is identical to the one in input_ad except that
434        multiDimAdvection=.FALSE.,
435      There is still an issue with this.
436    o pkg/thsice:
437      - account for ice velocity (ocean relative velocity) in turbulent heat flux
438        at the base of the ice; update output of global_ocean.cs32x15 (icedyn)
439        and offline_exf_seaice (main test).
440    
441    checkpoint64f (2013/03/31)
442    o verification/OpenAD:
443      - new (smaller, without OAD_DEBUG) output_oadm.txt generated using gfortran.
444    o verification/isomip, pkg/shelfice and OpenAD:
445      - add OpenAD setup to this exp and make shelfice package work with OpenAD
446    o verification/tutorial_global_oce_biogeo:
447      - update AD and TLM output after turning off ALLOW_FE (in DIC_OPTIONS.h)
448    o verification/offline_exf_seaice:
449      - replace adjoint experiment (now similar to fwd input.thermo/ setup).
450    o verification/tutorial_tracer_adjsens, pkg/ptracers and OpenAD:
451      - add OpenAD setup to this exp and make ptracers package work with OpenAD
452    o pkg/seaice/seaice_evp.F:
453       mask the asymmetric contribution of the ice-ocean stress (when
454       the turningAngle is non-zero) over open water to avoid stripes
455       in the EVP-solutions after many EVP-substeps. This does not change
456       the verification experiment (because turningAngle=0 in that experiment),
457       but will affect other EVP solutions with turningAngle.ne.0
458    o verification, AD & TLM output:
459      - new TAF version 2.3.10 (previously 2.3.8) add more parenthesis in multiple
460        additions and multiplications which affect results at machine truncation
461        level. Update few AD output (1D_ocean_ice_column, bottom_ctrl_5x5,
462        lab_sea.noseaicedyn & offline_exf_seaice) and TLM output
463        (1D_ocean_ice_column & tutorial_tracer_adjsens.som81) which had only 12
464        digits of matching.
465    o pkg/seaice:
466       modify lsr-algorithm so that it vectorizes AND converges by using a
467       "zebra" method: split vector loop into two with step size 2; this
468       solves a general convergence problem for the JFNK solver on a vector
469       computer. It has the potential to even improve convergence for
470       non-vector machines, but it does change the results so it is turned
471       off by default. To turn on define CPP-flags SEAICE_VECTORIZE_LSR and
472       SEAICE_VECTORIZE_LSR_ZEBRA in SEAICE_OPTIONS.h
473    
474    checkpoint64e (2013/03/05)
475    o pkg/ecco and several verification experiments:
476       Remove special versions of the_model_main.F, the_main_loop.F, forward_step.F
477       from ecco package, and revert to unified routine in model/src/
478       Adjust verification experiments accordingly, especially gloal_oce_llc90
479       Should conclude long-standing work by Gael to reconsile the_main_loop with
480       ECCO and will enable OpenAD's revolve loop in ECCO setup.
481    o pkg/generic_advdiff:
482      - implement compressible flow method for multi-dim advection (similar to
483        gad_som_advect.F); add new option "GAD_MULTIDIM_COMPRESSIBLE" (since
484        TAF generates many recomputations) to use it; no yet coded with implicit
485        vertical advection.
486      - change experiment advect_cs (new output) and advect_xy (same output)
487        to test compressible flow multi-dim advection.
488    o pkg/generic_advdiff:
489      - fix SOM advection for unusual cases (linear Free-Surf in r*, other
490        cases where linear Free-Surf is not @ k=1, e.g., useShelfIce)
491    o pkg/seaice:
492      - fix bug in the no-slip implementation in seaice_calc_strainrates.F, this
493        bug affects two verification experiments (lab_sea and lab_sea.hb87),
494        recover old (wrong) results by setting noSlipFac = 2. in
495        seaice_calc_strainrates.F;
496      - add another averaging method for etaZ (etaZmethod=3), a mix of 2 and 0
497      - add runtime parameter SEAICE_JFNKepsilon for that finite difference
498        gradient in the Jacobian times vector operation (s/r seaice_jacvec)
499      - fix line search in seaice_jfnk.F (s/r seaice_jfnk_update)
500    o pkg/seaice: reorganize seaice_lsr.F to be able to reuse more code:
501      - new subroutines seaice_lsr_tridiagu/v
502      - introduce loop bounds i/jmin/max to be able to use a restricted
503        additive Schwarz method, but not used for now.
504      - rename SEAICE_CALC_LSR_COEFFS into SEAICE_LSR_CALC_COEFFS
505      - use new subroutines seaice_lsr_tridiagu/v in s/r seaice_preconditioner
506    o OpenAD support
507       Reorganize S/R call for overall time-stepping loop to facilitate
508       OpenAD revolve loop replacement
509       (new S/R main_do_loop.F)
510    o model/src:
511      - add 3-D array 3rd dimension to argument list of S/R ADAMS_BASHFORTH2/3;
512      - pkg/cheapaml: remove local S/R ADAMS2d and use instead standard S/R
513        ADAMS_BASHFORTH2.
514    o pkg/cheapaml:
515      - add new parameter (default=F, same as before) to disable full domain
516        (including land) periodicity in X & Y dir.
517      - new S/R CHEAPAML_COPY_EDGES to copy relaxation field into edges of
518        prognostics field ; merge the 2 S/R cycle_2d_tracer and timestep_2d_tracer
519        into single S/R CHEAPAML_TIMESTEP.
520    
521    checkpoint64d (2013/02/17)
522    o pkg/monitor (angular momentum):
523      - do not add Eta contribution to the total AM if using rigid-lid;
524      - correct for Adams-Bashforth in zonal-wind part (instead of in AM_eta).
525      - horizontal discretisation: compute Zonal wind contribution separately for
526        each component (instead of from cell centered averaged) and use the 4
527        grid-cell corner averaged value of Omega*(R*cos_Phi)^2 in AM_eta part.
528      - Check that AM is conserved with linear dynamics (momAdvection=F and linear
529        FreeSurf) if using vectorInvariant momentum.
530    o model/src (horizontal grid):
531      - move initialisation of all horizontal grid arrays to null value
532        from specific horizontal grid S/R to main S/R INI_GRID;
533      - add 2 new arrays to project model C-grid velocity on to zonal direction
534        (similar to AngleCosC & -AngleSinC but at U and V point location) and
535        compute them in S/R CALC_GRID_ANGLES.
536    o pkg/seaice: replace a hard coded parameter by a runtime parameter
537        SEAICE_JFNK_tolIter
538    o pkg/seaice: introduce a restricted additive Schwarz (RAS) method in
539        preconditioner for JFNK (run LSR into the overlaps as far as possible,
540        i.e OLx/y-2, but overwrite the solution in the overlaps)
541      - extend loop range in seaice_calc_viscosity
542      - add new parameters SEAICE_OLx/y (default = OLx/y-2)
543      - add flexible loop ranges to seaice_preconditioner, seaice_calc_lsr_coeffs
544      - slightly modify loops in tridiagonal solver lsr-preconditioner
545      - by default remove the extra exchange in seaice_preconditioner with a
546        replacement of an undocumented CPP flag by SEAICE_PRECOND_EXTRA_EXCHANGE
547      - modify offline_exf_seaice so that old results without RAS are reproduced
548        for output.dyn_jfnk.txt
549      in seaice_fgmres.F (unrelated to RAS)
550      - add a cpp-flag option for a re-ordered mapping (potentially more
551        efficient), but because this changes the results, turn it off by
552        default
553      - replace the save statement by local common blocks
554    o utils/matlab:
555      - fix tile-offset in rdmnc.m when output was produced using EXCH2.
556      - update cs_grid/bk_line scripts to use load_grid.m (in utils/matlab)
557        instead of local script "load_cs.m".
558    o pkg/seaice:
559      - fix a serious bug in seaice_fgmres.F, s/r seaice_scalprod, connected
560        to the scalarProductMetric and the unrolling. By chance this does not
561        change the verification experiment, because of the particular domain
562        decomposition
563    o pkg/diagnostics:
564      - change default missing_value from UNSET_RL to -999.
565    o pkg/layers: improve vectorization of layers_fluxcalc.F
566      - step 1: split loops, make TatU/V 2D arrays. This alone reduces the cpu
567        time spent in this routine by more than a factor of 3 on an NEC-SX8
568      - step 2: replace search algorithm by a bisection algorithm found in
569        Press et al. Numerical Recipes in Fortran. This algorithm can be
570        vectorized and finds the correct bin in approx. log2(Nlayers) steps.
571        For now, use this algorithm only for TARGET_NEC_SX defined.
572      - moved the search algorithm into a separate subroutine, that is kept
573        within the same file for automatic inlining.
574      - modified catching potential errors
575    o pkg/ecco:
576      - add compile switches ALLOW_SHALLOW_ALTIMETRY and ALLOW_HIGHLAT_ALTIMETRY.
577    o model/src, pkg/autodiff, pkg/ctrl, pkg/grdchk :
578      - modifications for ALLOW_GENTIM2D_CONTROL
579      -- forward_step.F, the_main_loop.F : pass options and arrays for adjoint tapes.
580      -- load_fields_driver.F : add call to CTRL_MAP_GENTIM2D( myTime, myIter, myThid )
581      -- add xx_gentim2d0/1 in ctrl_ad_check_lev1_dir.h checkpoint_lev1_directives.h etc
582      -- use ctrl_swapffields.F (new) instead of exf_SwapFFields.F in ctrl_get_gen.F
583    o model/src:
584      - account for moist thermodynamics in (dry) potential temperature equation;
585        update results of experiments: aim.5l_cs (x2), fizhi-cs (std + aqualev)
586        and cpl_aim+ocn.
587      - also switch to standard compiler (gfortran, was using ifort previously)
588        for fizhi-cs experiments reference output.
589    o pkg/ctrl:
590      - 1st step toward generic time-varying control variable (2D) via CPP option
591        ALLOW_GENTIM2D_CONTROL
592      - note new namelist ctrl_nml_genarr in data.ctrl
593    o verification/global_ocean.cs32x15:
594      - switch off OLD_THSICE_CALL_SEQUENCE (both forward and AD code) to use new
595        thsice calling sequence and update "output.icedyn.txt" output file.
596    o pkg/ptracers:
597      - from Ryan A.: code to allow to restart a tracer at regular time interval
598        specifying a reset frequency and a reset-phase (for each tracers).
599    o pkg/thsice:
600      - implement new sequence of calls for thsice+seaice:
601          previously:   ice-Dyn,ice-Advect,ice-Thermo(thsice)
602          new sequence: ice-Thermo(thsice),ice-Dyn,ice-Advect
603      - allows (with temporary CPP option "#define OLD_THSICE_CALL_SEQUENCE"
604        in CPP_OPTIONS.h) to recover old sequence;
605      - update diagnostics for Intermediate State thsice diagnostics: now filled
606        just before advection (instead of just after advection in old sequence);
607      - update output of experiment offline_exf_seaice (standard test);
608      - in global_ocean.cs32x15 exp., postpone output.icedyn.txt update
609        by setting #define OLD_THSICE_CALL_SEQUENCE in CPP_OPTIONS.h
610    o pkg/aim_v23:
611      - use tiled array for aim_CO2 and surface wind speed for export to coupler;
612      - use standard pkg/mdsio routines to read & write CO2 pickup file;
613      - in-line S/R AIM_AIM2DYN_EXCHANGES in aim_do_physics.F;
614      - Implement new sequence of calls for seaice advection (with thsice and
615        seaice diffusion): do ice advection after ice-Thermodynamic (previously
616        was done before); change aim_do_physics.F (split the bi,bj loops block);
617      - use same CPP option (OLD_THSICE_CALL_SEQUENCE) to recover old sequence;
618    o pkg/thsice:
619      - add a missing EXCH of sIceLoad in thsice_main.F (ocean set-up) for the case
620        where just seaice diffusion is used without seaice-dynamics.
621    
622    checkpoint64c (2013/01/18)
623    o pkg/seaice:
624      - add a parameter JFNKres_tFac that can replace JFNKres_t
625        (= JFNKres_tFac*JFNKresidual before JFNK solver)
626      - add a line search option to the JFNK solver
627      - move update of u/vIce and computation of initial residual into a separate
628        routine (same file); makes the code a little easier to read (?)
629      - the line search requires computation of the residual and for some reason
630        I cannot do the update of u/vIce at the beginning of the Newton loop
631        without changing the results, so we move computation of the new residual
632        also to the end of the Newton loop, even without the line search
633    o pkg/mdsio:
634      - write missing value (corresponding to undefined array value) to meta files;
635        skip this if missing value is one (UNSET_RL would be a better value for the
636        case of undefined missing value but it's current the default missing-value);
637        Also update mdsio_read_meta.F (reading timeInterval & missing-value).
638    o pkg/exf & thsice:
639      - for diagnostics purpose, fill-up and update Qsw array (+ fill the
640        diagnostics) even when SHORTWAVE_HEATING is #undef;
641    o verification/cfc_example:
642      - turn on pkg/layers with pkg/diagnostics (to test pkg/layers and to
643        illustrate how to use it).
644    o verification/offline_exf_seaice:
645      in input: add SEAICErestoreUnderIce=.TRUE., and reduce size of forcing
646        files to only one time-record.
647      in input.thermo: narrow the 2 bands of low initial ice-concentration near
648        N & S edges; switch on SEAICErestoreUnderIce=T; use pkg/diagnostics for
649        snapshot output; same mcPheePiston value as in thsice with
650        surf-current=0.2m/s.
651      in input.thsice: similar set-up as in input.thermo (channel with same seaice
652        initial conditions).
653    o verification/cfc_example:
654      - update file "data" with more standard choice (default rotationPeriod,
655        exactConserv=T, reduce ivdc_kappa to 10, remove multiDimAdvection=F,
656        set deltaTFreeSurf to deltaTtracer) and update the output.
657    o pkg/layers:
658      - fix bolus part so that it compiles with #undef GM_BOLUS_ADVEC;
659      - ensure that "layers_bolus" is switched to False when useGMRedi=False.
660    o verification/offline_exf_seaice:
661      - set all {field}period to zero for constant-in-time forcing (not tested
662        anywhere else).
663    o verification/offline_exf_seaice:
664      - dyn_lsr  : use pkg/seaice S/R (instead of pkg/thsice) to advect sea-ice;
665      - dyn_jfnk : use pkg/thsice S/R (instead of pkg/seaice) to advect sea-ice.
666    o model/src:
667      - implement Finite-Volume method for (hydrostatic) presure gradient
668        from S.-J. Lin (QJRMS 1997), for atmosphere using sigma-coordinate.
669    o pkg/seaice: implement EVP* by Lemieux et al. (2012).
670      - In order to be compatible with the default EVP code, this requires changing
671        the EVP code around a little; and because any small change immediately
672        breaks the lab_sea.hb87 verification experiment, the reference output is
673        updated two times (each time the remaining aggrement was only 2 digits):
674        - after replacing 1/dt by 1*recip_dt with a precomputed recip_dt
675        - after replacing 1/(1+0.5*dt/tau) by a/(a+1), with a=2*tau/dt
676        The adjoint test lab_sea.evp also needed to be updated.
677      - Turn on EVP* by setting SEAICE_deltaTevp as before, and setting
678        SEAICEuseEVPstar=.true.; for EVP* SEAICE_deltaTevp does not need to be
679        a factor of SEAICE_deltaTdyn, and you can set the number of EVP steps
680        explicitly with SEAICEnEVPstarSteps (thereby overriding the default of
681        INT(SEAICE_deltaTdyn/SEAICE_deltaTevp)). Controlling EVP* is deliberately
682        kept obscure, because I need to test it a little more.
683    o pkg/cheapaml:
684      - fix few incorrect type (_RL/_RS) in subroutine calls.
685    o pkg/seaice:
686      - new S/R SEAICE_MAP_RS2VEC (similar to SEAICE_MAP2VEC) to map _RS arrays
687        to _RL vector; this fixes JFNK code when compiling with "-use_r4" option.
688    o model/src:
689      - add a warning if using select_rStar=2 with nonlinFreeSurf <> 4;
690        change (in input_ad*/data) select_rStar from 2 to 1 for AD verification
691        experiments global_ocean.cs32x15 & tutorial_tracer_adjsens (+ update output)
692    o pkg/cheapaml:
693      - replace "273.1 _d 0" by celsius2K in pkg/cheapaml/cheapaml.F and
694        update output of experiment cheapAML_box.
695      - store in CHEAPAML.h coeffs ssq[0:2] for saturation specific humidity,
696        and set them only in one place (cheapaml_readparms.F).
697      - replace "273.16 _d 0" by celsius2K & replace "3.14159 _d 0" by constant "PI"
698      - remove re-setting of main-model parameter "celsius2K" (in cheapaml_readparms)
699        and re-setting of cheapAML params "lath" & "p0" (in cheapaml_init_varia).
700    o model/src/the_main_loop.F:
701      - fix revision 129 : need both ALLOW_ECCO and ALLOW_ECCO_EVOLUTION.
702    o pkg/seaice:
703      - remove legacy branch code.
704      - retire SEAICE_GROWTH_LEGACY and SEAICE_CAP_HEFF accordingly.
705    o verification/*/code*/SEAICE_OPTIONS.h:
706      - remove documentation for retired CPP flags (SEAICE_GROWTH_LEGACY,
707        SEAICE_CAP_HEFF).
708    o pkg/cheapaml:
709      - use standard routine (S/R GET_PERIODIC_INTERVAL) to decide when it is time
710        to load new forcing fields.
711      - add missing "_d 0" where it's needed; + some editing (improve indentation).
712      - remove switch to "-r8" compiler option (no longer needed) in verification
713        cheapAML_box, keep same output (small trucation error differences).
714    o verification/offline_exf_seaice:
715      - add thermodynamics only test.
716    o verification/cheapAML_box:
717      - split the domain in 8 (2x4) tiles; add MPI and multi-threaded test;
718        keep same output (same 14 digits for cg2d).
719      - switch on "-r8" compiler option (some numerical values are missing
720        the "_d 0") and update output (only 6 digits for cg2d were preserved).
721    
722    checkpoint64b (2012/12/24)
723    o pkg/cheapaml:
724      - remove un-used variables (Qnet,EmPmR) from pickup files.
725      - store tendency of advected variables into cheapaml pickup file
726        and fix the AB-2 restart.
727    o verification/offline_exf_seaice and lab_sea adjoint:
728      - switch to new code (#undef SEAICE_GROWTH_LEGACY).
729      - switch to 4 time steps in offline, consistent with lab_sea.
730      - match parameters from SEAICE_GROWTH_LEGACY branch in data.seaice.
731      - update results after change of experiment seaice.
732    o pkg/seaice:
733      - remove option SEAICE_MULTICATEGORY; has been replaced with run-time
734        parameter SEAICE_multDim. Issue a warning if SEAICE_MULTICATEGORY is
735        still defined since SEAICE_multDim needs to be set to MULTDIM value (from
736        SEAICE_SIZE.h) to recover previous #define SEAICE_MULTICATEGORY default.
737    o model/src:
738      - add run-time parameter to select CG2D solver minimum-residual solution
739        (in case of a poor convergence).
740    o pkg/seaice/seaice_lsr.F
741      - move calculation of matrix coefficients into new
742        S/R SEAICE_CALC_LSR_COEFFS; for now this routine remains in the same
743        file; the main purpose of this change is to be able to reuse the code
744        in S/R SEAICE_PRECONDITIONER
745      - modify the computation of the residual so that the mass of sea-ice
746        is not used twice; this simplifies the calculations, but since
747        the residual is never used except when LSR_mixIniGuess.ge.4---and this is
748        not tested in testreport---this does not affect the testreport results.
749    o verification/seaice_obcs:
750      - disable SEAICE_GROWTH_LEGACY; reset input files to match those of
751        verification/lab_sea/input.salt_plume; changes results/output.txt*
752    o model/src:
753      - adapt quasi-hydrostatic formulation to work with p or p* coordinate.
754    o pkg/seaice:
755      - improve description of parameters in seaice_fgmres.F and start
756        cleaning up the code
757      - change name of SCALPROD to SEAICE_SCALPROD and modify meaning of
758        second argument
759      - add a metric based on grid cell area to SEAICE_SCALPROD; update
760        results of offline_exf_seaice.dyn_jfnk
761      - compute initial residual norm in seaice_jfnk based on SEAICE_SCALPROD
762    o pkg/aim_v23:
763      - fix an other bug in dissipation heating (grid-cell area was missing).
764    o model/src + pkg/seaice:
765      - add global (multi-tile) linear solver for pair of tri-diagonal system
766        along X and Y lines, respectively for U and V component.
767        Note: 1) MPI and cube-exchange not yet coded.
768            2) probably not accurate for poorly conditioned / large size problem.
769      - add option for SEAICE_LSR to use global (multi-tile) tri-diagonal solver;
770        default: not compiled and not used.
771    o pkg/seaice:
772      - first attempt at a multi-threaded fgmres solver for the JFNK solver:
773        introduce bi/bj loops and use global_sum_tile_rl instead of
774        mpi_allreduce in seaice_fgmres.F
775      - improve diagnostics output for fgmres solver (seaice_fgmres.F)
776      - replace a few unnecessary goto statements by if-blocks  (seaice_fgmres.F)
777      - add a verification experiment for JFNK in offline_exf_seaice
778    o verification:
779      - change (for now, only fwd test) offline_exf_seaice experiment:
780        use a re-entrant channel with idealized coastline (trapezoidal shape)
781        at southern boundary to explore seaice dynamics and thermodynamics
782        with simple forcing. Main set-up has dynamics+thermo and SST relaxation;
783        secondary test (input.thsice) use thermodynamics only with SST relaxation.
784      - add seaice-dynamics only secondary test using LSR and pkg/thsice advection.
785    o pkg/exf:
786      - disable "sstExtrapol" when Nr=1
787    o verification:
788      - add new experiment "cheapAML_box" (simple 1 layer set-up from Bruno Deremble)
789        to test pkg/cheapaml.
790    o pkg/aim_v23 & pkg/shap_filt:
791      - fix dissipation heating (erroneous gravity multiplication factor).
792    o pkg/seaice:
793      - remove unused field pressPre from jfnk solver
794      - rename two subroutines in seaice_preconditioner.F
795    o eesupp/src:
796       - S/R MDSFINDUNIT avoids reserved unit numbers (scrUnit1, eeDataUnit ...)
797    o pkg/seaice/seaice_preconditioner.F: fix preconditioner once again
798       - remove wrong parts of the rhs and the lhs (were in there
799         because I did not understand the concept of this preconditioner)
800       - add an exchange between u- and v-sweep. This increases communication
801         by a factor of two but improves the convergence of jfnk. Ideally,
802         one would like the u- and v-sweep to be independent. So far within
803         undocumented ifdefs
804       - reorganize the extra computations for printing the residuals
805    o tools/genmake2:
806      - comment out the "mpif.h" include in NetCDF test programm (for MPI built)
807        since it's not necessary (and was preventing to use MNC in some cases).
808    
809    checkpoint64a (2012/11/16)
810    o pkg/autodiff:
811      - improve pkg-internal logical parameter switch (inAd/inFwd mode) so that
812        autodiff_readparms.F no longer depends on calling order (within
813        packages_readparms.F) and no longer requires to include ${PKG}_PARMS.h):
814        rename param turnFreeDriftInAdMode to SEAICEuseFREEDRIFTswitchInAd
815        and change param SEAICEuseDYNAMICSinAdMode to SEAICEuseDYNAMICSswitchInAd.
816    o pkg/obcs:
817      - adding tidal velocity forcing capability to obcs
818        for usage example, see verification/seaice_obcs/input.tides
819    o pkg/seaice:
820      - turn the LSR-relaxation parameters WFAU/V into runtime parameters
821        SEAICE_LSRrelaxU/V
822      - introduce runtime parameter SEAICEetaZmethod (=0 by default)
823    o pkg/aim_v23:
824      - implement heating from friction (bottom friction and stratospheric drag).
825    o pkg/shap_filt:
826      - fix diagnostic "SHAP_dKE" (was 2 time smaller); implement heating from
827        dissipation but only for Shap_funct=2, active when addFrictionHeating=T.
828    o model/src:
829      - move AddMass common block from DYNVARS.h to FFIELDS.h; allow to read-in
830        time-constant addMass field from file (addMassFile);
831      - support for heating due to friction (and Kinetic Energy dissipation):
832        add option, run-time switch and 3-D field array + support code ; each pkg
833        or S/R can add heating contribution (if there is a sink of KE); the sum is
834        accounted for as a Temperature tendency term (EXTERNAL_FORCING_T).
835    o pkg/seaice:
836      - complete merge of ITD code into seaice_growth.F
837        from MITgcm_contrib/torge/itd/code/
838        no verification so far, but Torge Martin tested
839        "1-D test case and Beaufort set up;
840        deliver okay results after 1 model year."
841      - complete merge of SEAICE_SIZE.h into all relevant routines
842      - move computation of eta at Z-points into calc_viscosities
843        + introduce global field etaZ
844        + add different methods for computing etaZ, for now the old
845          method (simple averages of eta to Z-points) is hardwired
846        + replace etaMeanZ by etaZ in seaice_lsr, seaice_calc_residual,
847          seaice_preconditioner
848      - simplify computations for SEAICE_ZETA_SMOOTHREG
849      - seaice_preconditioner:
850        + replace one remaining press by pressLoc (mistake)
851        + adjust printing of residuals
852      - improve I/O of diagnostics of JFNK in seaice_jfnk.F:
853        + add (SEAICE.h) and rename some counters (initiliased in
854          seaice_init_fixed.F)
855        + add _BEGIN/END_MASTER (myThid)  around print statements
856        + print total number of iterations and failures over SEAICE_monFreq
857          interval to STDOUT
858      - move control over output-messages by fgmres to seaice_jfnk to save
859        some operations
860      - move resetting initial guess for fgmres outside of seaice_fgmres_driver
861        in order to make restarts with sol .ne. zero (fgmres with restarts)
862        (seaice_jfnk.F, seaice_fgmres.F)
863      - seaice_calc_l/rhs.F: replace maskW/S by maskInW/S; this fixes
864        a serious convergence problem when open boundaries are involved
865    o pkg/ggl90: fix computation of control volumes for the case of
866      ALLOW_GGL90_HORIZDIFF (probably not used very often): move control volumes
867      up half a grid cell from C-centered to W-centered (pointed out by C. Eden)
868    o pkg/seaice: simplify seaice_evp by avoiding use of extra fields u/vIceC
869    o pkg/autodiff
870      - Add inAdMode switch for SEAICEuseDYNAMICS:
871        SEAICEuseDYNAMICSinAdMode
872        (extend logic in ADAUTODIFF_INADMODE_SET)
873    o pkg/seaice
874      - Step 1 of merging ice-thickness distribution (ITD) code from
875        MITgcm_contrib/torge/itd/ (author: Torge Martin)
876        The code implements concept laid out in Thorndike et al. (1975);
877        code is enabled via CPP flag SEAICE_ITD
878        nITD (in SEAICE_SIZE.h) defines number of ice thickness categories;
879        code is not complete yet!!
880      - SEAICE_SIZE.h now included in almost all seaice routines
881    o verification (using seaice):
882      - switch back seaice-dynamics (+ lower SOLV_MAX_ITERS) in ADM exp.
883        global_ocean.cs32x15.seaice ; update results.
884      - compile B-grid dynamics in FW test exp 1D_ocean_ice_column ;
885      - compile C-grid dynamics with #define SEAICE_ALLOW_JFNK in FW test exp
886        offline_exf_seaice (previously compiling B-grid).
887    o pkg/exf:
888      - fix some STOP conditions in exf_check.F (from Aug 28, modifs did not allow
889        to specify neither just 1 comp of wind or wind-stress, nor no surface momentum
890        forcing): just replace CPP option ALLOW_ATM_WIND with run-time param useAtmWind.
891    o pkg/layers (adjust changes from Sept 19):
892      - do snap-shot output and fill diagnostics from inside iLa loop (layers_calc.F)
893        this allows to remove "layers_maxNum" dimension from all layers arrays.
894    o pkg/layers (adjust changes from Sept 19):
895      - remove ALLOW_LAYERS_OUTPUT ; fix snap-shot and time-ave output ;
896      - snap-shot extended to all type of layers (not just the 1rst type);
897      - remove layers variables when corresponding CPP option is undef.
898    o pkg/layers:
899      - rename pkg/layers variable and add new output (layer exist & un-weighted
900        velocity in layer)
901    o pkg/seaice:
902      - simplify (?) ocean-drag coefficent computations by using
903        the same routine in all three solvers (saves some code lines)
904      - remove global fields DRAGA and DRAGS from C-grid code and
905        declare them locally in lsr.F (the only place where they are
906        still used)
907      - update AD output of lab_sea.evp (very sensitive anyway).
908    o pkg/seaice: add Jacobian-free Newton Krylov solver for ice dynamics
909      (Lemieux et al. 2010, 2012). Turn on with the usual SEAICE_ALLOW_JFNK
910      and SEAICEuseJFNK=.true. A few things to note:
911      - involves a FGMRES, that is parallel but very inefficient,
912        because of many scalar products (global sums) in the Gram-Schmidt
913        orthogonalization method. Needs to be replaced. Original code
914        from J.-F. Lemieux
915      - preconditioner for FGMRES is a stripped down version of LSOR
916      - SOLV_MAX_ITERS is now used for LSOR as a solver and as a
917        preconditioner. For the preconditioner, the default is set to 10.
918      - Jacobian times vector is computed with finite differences
919      - marginally related to JFNK-solver: add a smooth regularization for
920        zeta with tanh that will improve convergence (Lemieux and Tremblay,
921        2009) for any implicit solver (not implemented for EVP because EVP
922        does not need this regularization in the first place). Define
923        SEAICE_ZETA_SMOOTHREG in SEAICE_OPTIONS.h to use.
924    o eesupp/src:
925      - check in genmake2 that intrinsic S/R flush is available.
926      - add S/R to flush IO unit (if intrinsic S/R flush is available)
927      - flush standard & error msg unit before MPI termination
928      - if debugMode, flush IO unit after printing msg
929    o pkg/ctrl:
930      - ctrl_unpack.F, ALLOW_GENARR3D_CONTROL code: fix missing argument in call
931        to ctrl_set_unpack_xyz.
932    
933    checkpoint64 (2012/10/09)
934    o pkg/shelfice
935      - in mom_fluxform.F, mom_vecinv.F:
936        CALL SHELFICE_V_DRAG(bi,bj,k,vFld,KE,KappaRU,vF,myThid)
937        Bug fix KappaRU -> KappaRV
938        does not change verification/isomip but may change other setups
939        (presumably constant KappaRU=KappaRV)
940      - fix diagnostics SHIU/Vdrag (thanks to Tom Millgate)
941    o pkg/obcs:
942      - fixed some indexing bugs in obcs_seaice_sponge.F
943      - added obcs relaxation subroutines for HSALT and HSNOW
944      - changes verification/seaice_obcs/results/obcs_seaice_sponge.F
945    o pkg/seaice:
946      - add "multicategory" parameterization for snow in analogy to ice,
947        default is off for now.
948    o pkg/obcs:
949      - added obcs_seaice_sponge.F for obcs relaxation of seaice variables;
950        see verification/seaice_obcs/input.seaiceSponge for example application.
951      - remove local commom bloc "OBCS_GLOBAL" in obcs_readparms.F and do all the OB
952        index setting by master-thread. This fix multi-threads Pb in previous modifs.
953    o pkg/layers :
954      - add diagnostics to pkg/layers
955      - move the meat of pkg/layers from layers_calc.F to layers_fluxcalc.F
956        (from R.Tulloch). Layers_calc.F now calls layers_fluxcalc.F accordingly.
957    o pkg/generic_advdiff/gad_implicit_r.F :
958      - fix ADVr diagnostics in case of both implicit vertical advection and diffusion.
959    o pkg/seaice/seaice_growth.F:
960      - fix SItflux diagnostics in virtual salt flux + balanceEmpmr case.
961    o pkg/obcs:
962      - change default setting of OBCS_UVICE_OLD from defined to undef;
963      - use new parameter OB_indexNone for null index value (instead of hard-coded 0)
964        in all pkg/obcs code and in other pkgs; remove k loop in obcs_check_depths.F;
965      - pass OB_indexNone as (new) argument to S/R CTRL_MASK_SET_[X,Y]Z;
966      - change OB null index value (OB_indexNone) to -99 ; this fix the problem
967        with Southern & Western OB at a tile edge (at least in a simple set-up).
968    o pkg/obcs:
969      - change settings of OB index in case OB coincides with tile edge (shared by
970        2 tiles), so that common OB location is registered by both tiles (instead of
971        only 1). However, for Southern and Western OB, index value = 0 is not
972        recognized as valid OB index (=default null value) and needs to be fixed.
973      - modify accordingly OBCS_BALANCE_FLOW and OBCS_MONITOR (avoid double counting)
974      - new parameter "OB_indexNone" for null index value (for now, still zero)
975        to replace hard-coded null index value of zero.
976    o pkg/exch2:
977      - improve W2_USE_E2_SAFEMODE (faster) and W2_E2_DEBUG_ON:
978        always check buffer-size (but outside the loop); move checking for valid
979        index from W2_USE_E2_SAFEMODE to W2_E2_DEBUG_ON; in W2_E2_DEBUG_ON,
980        print each tile and point connection only if |W2_printMsg|>= 2 and 3.
981    o pkg/ctrl (pack & unpack):
982      - in ctrl_pack.F & ctrl_unpack.F, use the same local file-name variable
983        (locally defined) for different variables (+ remove the variable-specific
984        file name in CTRL_GENARR.h). For now, only implemented for GENARR2/3D_CONTROL
985        (to be extended to other local file names in ctrl.h).
986    o pkg/flt:
987      - add a FLT_Iter0 option (similar to PTRACERS_Iter0).
988    o pkg/mdsio:
989      - fix missing STOP in mdsio_readvec_loc.F (case ioUnit=0) when file is missing
990    o tools/genmake2:
991      - add similar dependences for target EXE_AD & EXE_FTL as we have for EXECUTABLE
992        (added by Alistair in version 1.51 for building without make depend);
993      - remove Header files list (H_SRC_FILES) from the dependence of targets
994         ad_input_code.f & ftl_input_code.f (not clear why it was added in the first
995        place in version 1.23): this save going through staf when unrelated header
996        file has been modified.
997       Note: for an intermediate target (e.g., ad_input_code.f or adtaf) without
998        "make depend" step, still need to do "make links" before "make adtaf".
999    o eesupp/src (+ few pkg src files) & genmake2:
1000      - finish to remove ALWAYS_USE_MPI in source code that TAF does not see;
1001      - no longer set ALWAYS_USE_MPI in Makefile (was done by genmake2).
1002      - improve genmake2 checking for ALLOW_${PKG} in CPP_OPTIONS.h files (distinguish
1003         upper/lower case ; account for space between "#" and undef/define)
1004    o pkg/flt (with exch2):
1005      - cleaning: fix so that it compiles; move remaining MPI calls out of flt_exch2.F;
1006      - simplify threads synchronisation; fix (many issues) multi-threaded with MPI.
1007    
1008    checkpoint63s (2012/09/05)
1009    o pkg/ecco:
1010      - remove #ifdef ALLOW_SMOOTH_CORREL3D brackets.
1011      - add more relevant #ifdef ALLOW_SMOOTH ones.
1012      - sort out useAtmWind, useSMOOTH, ctrlSmoothCorrel2D.
1013    o pkg/ctrl:
1014      - CTRL_OPTIONS.h : document CPPs related to smoothing; ALLOW_SMOOTH_CORREL2D/3D,
1015        ALLOW_CTRL_SMOOTH, ALLOW_SMOOTH_CTRL2D, ALLOW_SMOOTH_CTRL3D.
1016      - ctrl.h : document run time params doInitXX, doMainPack, doMainUnpack, doPackDiag,
1017        doSinglePrecTapelev (audodiff param!), ctrlSmoothCorrel2D (new) and
1018        ctrlSmoothCorrel3D (new).
1019        The added ctrlSmoothCorrel2D/3D replace the old ALLOW_SMOOTH_CORREL2D/3D CPP.
1020      - ctrl_readparms.F : initialise ctrlSmoothCorrel2D/3D and read from namelist.
1021      - ctrl_init.F ctrl_pack.F ctrl_unpack.F : switch off ustress/vstress
1022        controls when useAtmWind, and vice versa.
1023      - ctrl_map_ini_ecco.F : UVEL0, VVEL0, edtaux, edtauy cannot be smoothed as tracers.
1024      - ctrl_get_gen.F : replace #ifdef ALLOW_SMOOTH_CORREL2D with
1025          #ifdef ALLOW_SMOOTH, IF ctrlSmoothCorrel2D, IF useSMOOTH.
1026      - ctrl_map_ini_gen.F : replace #ifdef ALLOW_SMOOTH_CORREL3D with
1027          #ifdef ALLOW_SMOOTH, IF ctrlSmoothCorrel3D, IF useSMOOTH.
1028      - ctrl_set_pack_xy[z].F, ctrl_set_unpack_xy[z].F:
1029        replace ALLOW_SMOOTH_CORREL2D/3D brackets with ctrlSmoothCorrel2D/3D.
1030    o pkg/smooth:
1031      - remove un-necessary includes.
1032      - remove ALLOW_SMOOTH*D and ALLOW_SMOOTH_CORREL*D brakets.
1033        Those CPP options were never defined, and not necessary.
1034    o model/src:
1035      - fix CPP brackets in ini_mixing.F (GM_background_K belongs to gmredi).
1036      - standard treatment of useSMOOTH.
1037    o pkg/autodiff:
1038      - add LOGICAL useGGL90inAdMode, useGGL90inFwdMode, useSALT_PLUMEinAdMode,
1039        useSALT_PLUMEInFwdMode allowing to switch off ggl90 and salt_plume adjoint.
1040    o pkg/exch2:
1041      - add "if usingMPI" where it was missing (in exch2_rx?_cube*.template)
1042        + start to remove ALWAYS_USE_MPI in source code that TAF does not see.
1043      - make new S/R W2_MAP_PROCS out of w2_eeboot.F to setup exch2 CommonFlag
1044        and tiles to process mapping.
1045      - re-arrange 3 header files (W2_EXCH2_PARAMS.h, _BUFFER.h & _TOPOLOGY.h)
1046        moving /EXCH2_FILLVAL_RX/ & /W2_EXCH2_COMMFLAG/ to W2_EXCH2_TOPOLOGY.h;
1047        rename "exch2_tProc" to "W2_tileProc" and move seting of e2FillValue_RX
1048        from w2_eeboot.F to w2_readparms.F.
1049    o eesupp/src:
1050      - set exchNeedsMemsync & exchUsesBarrier according to "usingMPI" (instead of
1051        ALWAYS_USE_MPI) + moved from ini_communication_patterns.F to eeset_parms.F;
1052        also move setting of exchCollectStatistics from exch_init.F to eeset_parms.F
1053      - in eedie.F and all_proc_die.F, always call MPI_FINALIZE when ALLOW_USE_MPI
1054        is defined (remove condition on usingMPI) to match cases where MPI_INIT
1055        has been called.
1056      - fix bug I put in previous modif of exch_sm_3d_rx.template (not much used);
1057      - change default (non-MPI) value of myPid (from 1 to 0) to match MPI settings
1058        (so that on 1 proc, get same myPid independently of usingMPI)
1059      - add a stop if multi-procs but usingMPI=F ; stop also if usingMPI=T and
1060        useCubedSphereExchange with EXCH-1 (safer).
1061      - add "if usingMPI" where it was missing (+ start to remove ALWAYS_USE_MPI).
1062    o pkg/ggl90:
1063      - fix bug in filling corner mask array "mskCor" (FILL_CS_CORNER_TR_RL call)
1064        used in ALLOW_GGL90_SMOOTH code.
1065    o pkg/flt:
1066      - fix typo in FLT_WITHOUT_Y_PERIODICITY (the effect was to ignore stopping
1067        floats at the Southern end of the domain).
1068    o eesupp/inc:
1069      - add a list of CPP-options which can be set by Makefile (DEF_IN_MAKEFILE.h);
1070        but not used (and not to be used) anywhere, just for documentation.
1071    o pkg/autodiff, exf, ptracers & seaice (AD & TL output):
1072      - comment out the very nasty "writeBinaryPrec = writeStatePrec" line, since:
1073        a) can damage previously written records in any other multi-record files.
1074        b) if needed, can easily do it cleanly, by calling S/R WRITE_REC_3D_RL/S.
1075    o tools/genmake2:
1076      - define variable MAKE within Makefile and use it in place of 'make';
1077      - update AD_CONFIG.h (if needed) before building any of the executable
1078        (forward, adjoint or tangent-lin); this involves a 2nd invocation of make;
1079        and add the usual #ifndef/#define AD_CONFIG_H in AD_CONFIG.h;
1080      - always print usual warning comment 'this file is automatically generated'
1081        from script convert_cpp_cmd2defines (+ remove this warning from genmake2).
1082    o pkg/cheapaml:
1083      - updated to correspond to the code used in accepted paper (Nico Wienders).
1084    o pkg/exf:
1085        added run time switch useAtmWind to replace ALLOW_ATM_WIND cpp switch.
1086        ALLOW_ATM_WIND now just sets the useAtmWind default (see exf_readparms.F)
1087        and force defines ALLOW_BULKFORMULAE (EXF_OPTIONS.h).
1088    o pkg/exf, autodiff, ctrl, ecco and seaice:
1089        remove ALLOW_ATM_WIND brackets, or replace them with useAtmWind ones.
1090    o pkg/ctrl, ecco:
1091        allow to compile both ALLOW_U/VSTRESS_CONTROL and ALLOW_U/VWIND_CONTROL.
1092        Depending on useAtmWind, one is inactive, and the other is active (see
1093        exf_getffields.F/exf_getsurfacefluxes.F).
1094    o tools/genmake2:
1095      - improve error msg when failing in 2nd test of check_for_broken_Ff
1096      - fix option '-makefile' short-name (-mf according to genmake2 -help)
1097      - source local config file "genmake_local" just after processing the genmake2
1098        command arguments (previously done before processing arg).
1099    o pkg/grdchk:
1100      - add a call to TURNOFF_MODEL_IO for Tangent-Linear run (in this case, call
1101        to this routine from cost_final has been dropped in g_cost_final)
1102      - improve printed information (more explicit msg, no longer using "print *,"
1103         fix fcpertminus printed value).
1104    o model/src:
1105      - move call to COST_INIT_VARIA out of packages_init_variables.F directly
1106        into initialise_varia.F (just after calling PACKAGES_INIT_VARIABLES):
1107        this prevents getting cost-funct reset in adinitialise_varia recomputations.
1108    o pkg/dic:
1109      - move initialisation of "freefe" array from from dic_biotic_forcing.F to
1110        fe_chem.F: this prevents TAF from dropping this initialisation in TLM code.
1111    o pkg/grdchk:
1112      - grdchk_main.F : added CALL GLOBAL_SUM_INT( ierr , myThid )
1113      - grdchk_getadxx.F etc. : omit I/O if ierr.EQ.0
1114    o pkg/autodiff/ctrl/grdchk :
1115      - attempt to sort out what works and what does not,
1116        with regard to I/O, and to warn/stop accordingly.
1117    o pkg/grdchk:
1118      - attempt to fix grdchk in the case of useSingleCpuIO.
1119      - "if ( myProcId .EQ. grdchkwhichproc .AND. ierr .EQ. 0 )"
1120       statements were moved from grdchk_main.F and into
1121       grdchk_getadxx.F grdchk_getxx.F grdchk_setxx.F.
1122      - a global sum is applied to record numbers icvrec/layer
1123       out of grdchk_loc so that they be passed to I/O routines.
1124    o pkg/smooth:
1125      - fix recomputation that appeared with nlfs : use smooth_recip_hFacC,
1126        smooth_hFacW, smooth_hFacS (copied at init_fixed) in 3d case.
1127    o verification/testreport:
1128      - add option '-tlm' for Tangent-Linear test (-adm,-oad,-tlm are all exclusive);
1129      - can also use compressed (gzip) reference output file;
1130      - change format (in pkg/grdchk) of TLM output (+ add forward gradient)
1131        to be easier to collect by testreport.
1132      - update existing TLM output (half out-of-date by more than 3 yrs).
1133      - report NETCDF & LAPACK settings (from genmake2) in output dir.
1134      - report run-time in each individual summary (previously only for AD test);
1135        for TLM test, add also TAF version.
1136      - add daily TLM test on (old) aces cluster + weekly test on baudelaire.
1137    
1138    checkpoint63r (2012/08/15)
1139    o tools/genmake2:
1140      - fix Makefile for target ftlall (+ update files to clean after make ftlall)
1141    o pkg/ecco/ecco_cost_final.F :
1142      - fix fc print statements (to stdout and costfunction0000) so
1143        that the printed value is always after the global sum.
1144    o pkg/seaice/seaice_dynsolver.F :
1145      - fix ice strength assymptote at SEAICE_area_max<1
1146        (no change for the standard case of SEAICE_area_max=1)
1147    o some cleaning:
1148      - pkg source files: ensure that all *.F files from each pkg included the
1149        corresponding ${PKG}_OPTIONS.h file (except stand-alone src file which
1150        only includes CPP_EEOPTIONS.h); fix S/R CTRL_SMOOTH ; update AD experiment
1151        code_ad/*.F src files; add new option-file in pkg/admtlm + corresponding
1152        includes;
1153      - model/src: add PACKAGES_CONFIG.h wherever ALLOW_AUTODIFF[_TAMC] is used.
1154      - ALLOW_DIFFKR_CONTROL: add a stop in S/R CTRL_CHECK in case ALLOW_3D_DIFFKR
1155        is undef; also define /DYNVARS_DIFFKR/ common block in DYNVARS.h when
1156        ALLOW_DIFFKR_CONTROL is defined, to allow to compile and reach this stop.
1157      - update option-file CPP_OPTIONS.h of all AD experiments:
1158        * no longer include PACKAGES_CONFIG.h ;
1159        * includes ECCO_CPPOPTIONS.h if PACKAGES_CONFIG.h has been included ;
1160        * def/undef ALLOW_3D_DIFFKR independently of ALLOW_DIFFKR_CONTROL (before
1161          including ECCO_CPPOPTIONS.h).
1162    o pkg/cost, pkg/ctrl, pkg/ecco option-file:
1163      - clean-up and split content of old pkg/ecco/ECCO_CPPOPTIONS.h file into
1164        separated pkg option-file (done according to old doc from ECCO_CPPOPTIONS.h,
1165        not necessary accurate).
1166      - add a template for option-file ECCO_CPPOPTIONS.h, mostly empty, in
1167        pkg/autodiff, i.e., the 1rst pkg to compile for adjoint built, with lines to
1168        deliberately break compilation (a remainder that it needs to be customized)
1169      - in pkg/ecco, includes ECCO_OPTIONS.h instead of COST_OPTIONS.h
1170      - rename COST_CPPOPTIONS.h to COST_OPTIONS.h
1171      - rename CTRL_CPPOPTIONS.h to CTRL_OPTIONS.h
1172    o tools/genamke2:
1173      - check for lapack.
1174    o pkg/cost and pkg/ecco : attempt to sort out some of the limiting intricacies.
1175      - pkg/cost.cost_final.F : allow for use of pkg/ecco and pkg/cost cost functions
1176        jointly. The exclusive ifdefs were removed, to add costs terms (when defined)
1177        from both packages.
1178      - the fc global sum in pkg/ecco/ecco_cost_final.F was removed accordingly.
1179      - for objf_atl we use either the pkg/ecco or the pkg/cost term depending on CPPs.
1180      - pkg/ecco and model/src : add CPP brackets around pkg/cost and pkg/ctrl includes
1181        of "CTRL_SIZE.h" "ctrl.h" "ctrl_dummy.h" "optim.h" / "cost.h" accordingly.
1182    o pkg/cost : add comments to explain special and/or untested setups.
1183  o pkg/exf:  o pkg/exf:
1184    - use EXF_OPTIONS.h to set pkg/exf options except if done in ECCO_CPPOPTIONS.h    - use EXF_OPTIONS.h to set pkg/exf options except if done in ECCO_CPPOPTIONS.h
1185      (previously, ALLOW_AUTODIFF_TAMC was controling this switch).      (previously, ALLOW_AUTODIFF_TAMC was controling this switch).
Legend:
Removed from v.1.1711  
changed lines
  Added in v.1.1932
  ViewVC Help
Powered by ViewVC 1.1.22