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revision 1.893 by jmc, Fri Oct 19 19:10:24 2007 UTC revision 1.917 by jmc, Tue Dec 4 23:58:16 2007 UTC
# Line 4  $Name$ Line 4  $Name$
4      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
5      ==============================      ==============================
6    
7    o no longer write pickup from THE_MODEL_MAIN but always from FORWARD_STEP
8    o pkg/exf: added CPP option EXF_SUBTRACT_UVVEL_FROM_UVWIND for subtracting
9      UVEL and VVEL from UWIND and VWIND prior to applying bulk formulae.
10    
11    checkpoint59k
12    o pkg/seaice: ICE2WATR=SEAICE_rhoIce/rhoConst for consistency between
13      dynamics and thermodynamics. Set ICE2WATR=0.92 to reproduce older results.
14    o fix un-initialised variable problem (in mom_vecinv & shap_filt):
15      all experiments pass when compile with un-initilised var. checking option.
16    o added pkg/salt_plume
17    o script to test restart (for now, in MITgcm_contrib/jmc_script)
18    o pkg/seaice: new read/write pickup version.
19      read meta file and write only fields which are needed to restart.
20      ( same logic as main pickup file ; also using pickupStrictlyMatch )
21    o pkg/seaice: fix bug in seaice_ocean_stress (call of seaice_calc_strainrates)
22    o lab_sea.hb87: modify the domain & update output.hb87.txt :
23      lat-long grid & no-slip BC in seaice-dynamics produce different sigma12
24      at j=1 & j=Ny+1 : this case is not treated correctly in the restart
25      process. Fixed here by closing the domain at the Northern boundary.
26    o pkg/rw: cleaning-up: call directly new MDSIO S/R MDS_READ/WRITE_FIELD.
27    o pkg/mdsio: add new arguments to MDS_READ/WRITE_FIELD for reading/writing
28      a set of consecutive levels in/from a 3-D array.
29    o pkg/ptracers:
30      use a 2 characters string ioLabel to identify tracer (if more than 99 tracers).
31      to-do: fix pkg/diagnostics when large number of diagnostics are defined.
32    
33    checkpoint59j
34    o in pkgs: dic, obcs, offline, rbcs:
35      standard way to compute coeff. for time interpolation between 2 time reccords
36      which retains full precision (& make results less dependent on compiler).
37      update output of exp: tutorial_cfc_offline & tutorial_global_oce_biogeo.
38    o pkg/cfc: if compiled with exf and seaice, cfc now can use fields from those
39      packages instead of reading ice cover and wind speed separately
40    o split PTRACERS.h in 2 header files: PTRACERS_FIELDS.h & PTRACERS_PARAMS.h
41     (keep a temporary version of PTRACERS.h in verification/OpenAD/code_ad_openad
42      to allow to compile customized code before the update)
43    o cleaning-up:
44      - fix CPP instruction syntax in pkg/obcs
45      - replace (some) call to MDSIO S/R with call to RW interface S/R ; and
46        add #ifdef ALLOW_MDSIO elsewhere (allows to compile without pkg/mdsio)
47      - fix some threads issue in IO parts.
48    o pkg/dic:
49      - add tons of "_d 0" (--> much better testreports !)
50       and then update outputs of tutorial_global_oce_biogeo
51    o pkg/mom_fluxform:
52      add a special version of momentum advection intended to conserve momentum
53      next to a bathymetry step or a coastline edge. (default = off = #undef)
54    o new read/write pickup version:
55      - for now, only implemented for main (mdsio) pickup file.
56      - write out only what is needed to restart; merge pickup_nh , pickup_ph
57        and main pickup together.
58      - read meta file; read only what is needed to restart; stop if a field
59        is missing (if pickupStrictlyMatch=T, = the default) or try to restart
60        if it make sense (even if the restart is not perfect).
61      - if no meta file, assume that pickup to read corresponds exactly to
62        a pickup that would currently be written.
63      - read pickup written in the old format (until checkpoint59i) if it
64        recognizes an old meta file (no field-list).
65      - add a meta file in exp. which starts from a pickup: 2 cases:
66        a) minimal meta file (with just file precision) + pickupStrictlyMatch=F
67         e.g.: global_ocean.90x40x15/input/pickup.0000036000.meta
68        b) a meta file describing the content of the associated pickup file
69         e.g.: tutorial_global_oce_biogeo/input/pickup.0004248000.meta
70    o pkg/mdsio & pkg/rw:
71      - new routine to read a meta file ; new set of routine to read
72        Multiple-fields file (with meta file).
73    o added open boundary conditions capability for seaice
74        HSNOW, HSALT, UICE, and VICE
75    
76    checkpoint59i
77    o adjoint:
78      * fix multiDimAdvection adjoint
79        (partial recomputation problem by TAF for fVerT(:,:,kDown)
80        and comlev1 size definition (maxpass vs. max. number of tracers)
81      * verification/global_ocean.90x45x15 adjoint now tests
82        NLFS and multiDimAdvection using DST3 (=30)
83      * verification/lab_sea now tests multiDimAdvection using DST3 (=30)
84    o pkg/kpp: add "_d 0" to real constant (if missing);
85      update output of exp: natl_box (10.digits); vermix (std, 7.digits)
86      and lab_sea, 3.FW (only 6,4,6 digits match) & AD (8.digits).
87  o prepare for "clever pickup" implementation: add new header file "RESTART.h"  o prepare for "clever pickup" implementation: add new header file "RESTART.h"
88    for internal parameters related to restart process (formerly from PARAMS.h)    for internal parameters related to restart process (formerly from PARAMS.h)
89    and add startAB parameter to argument list of S/R ADAMS_BASHFORTH2.    and add startAB parameter to argument list of S/R ADAMS_BASHFORTH2.
# Line 25  o add a little bit of code to gad_os7mp_ Line 105  o add a little bit of code to gad_os7mp_
105  o add new diagnostics to seaice: advective, diffusive fluxes (only for  o add new diagnostics to seaice: advective, diffusive fluxes (only for
106    multidim-advection, for scheme 2 they are not filled) and transports,    multidim-advection, for scheme 2 they are not filled) and transports,
107    thermodynamic growth rates    thermodynamic growth rates
108  o change units of EmPmR (inside the code) from m/s to kg/m2/s (mass flux) but  o change units of EmPmR (inside the code, + within coupling interface)
109    leave input file unchanged. Affects results @ truncation level (cg2d match)    from m/s to kg/m2/s (mass flux) but leave input file unchanged.
110    and update output of experiments: lab_sea(6), global_ocean.90x40x15(10),    Affects results @ truncation level (cg2d match) and update output of
111       experiments: lab_sea(6), global_ocean.90x40x15(10),
112    global_ocean.cs32x15(11x3,10), natl_box(11), tutorial_global_oce_latlon(11)    global_ocean.cs32x15(11x3,10), natl_box(11), tutorial_global_oce_latlon(11)
113    + adjoint results: global_ocean_ebm(11) and lab_sea (12).    + adjoint results: global_ocean_ebm(11) and lab_sea (12).
114      Coupled set-up: allow to restart from previous pickups (cpl_oldPickup=T).
115    Next: will retire convertEmP2rUnit (simply using mass2rUnit instead).    Next: will retire convertEmP2rUnit (simply using mass2rUnit instead).
116    
117  checkpoint59h  checkpoint59h

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