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revision 1.1954 by jmc, Sun Jan 5 20:16:53 2014 UTC revision 1.1977 by atn, Mon Apr 7 18:41:13 2014 UTC
# Line 4  $Name$ Line 4  $Name$
4      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
5      ==============================      ==============================
6    
7    o pkg/ecco:
8      - add runtime parameters mdt[start,end]date[1,2]
9      - rename variable "tpmean" as "mdt" and "topexmeanfile" as "mdtdatfile"
10    o pkg/seaice:
11      - make deltaC a global variable, so that it can be used in ridging code
12      - first step towards ridging: introduce new routines that compute
13        ice strength based on ridging parameters
14    o pkg/salt_plume + pkg/seaice/seaice_growth.F
15      - add SALT_PLUME_IN_LEADS flag to activate pkg/salt_plume only when ice
16        AREA exceeds a threshold (code contributed by I.Fenty in 2011)
17    o verification/hs94.1x64x5:
18      - leave ALLOW_AUTODIFF_TAMC undefined in code_oad/AUTODIFF_OPTIONS.h
19      - do not use ECCO_CPPOPTIONS.h anymore for TAF & OpenAD Adjoint tests.
20    o autodiff:
21      - Start to include explicitly AUTODIFF_OPTIONS.h, COST_OPTIONS.h,
22        and CTRL_OPTIONS.h in src files (to enable to skip the ECCO_CPPOPTIONS.h)
23        For now, only in pkgs used in verification/hs94.1x64x5.
24      - Replace ALLOW_AUTODIFF_TAMC by ALLOW_AUTODIFF (except for tape/storage
25        which are specific to TAF/TAMC).
26      - Replace ALLOW_AUTODIFF_OPENAD by ALLOW_OPENAD:
27        since ALLOW_OPENAD is defined in PACKAGES_CONFIG.h (any time pkg/openad
28        is compiled), this simplifies/reduces which *_OPTIONS.h file to include.
29      - OpenAD: change Makefile to generate the appropriate AD_CONFIG.h when
30        building mitgcmuv_ad (make adAll).
31    o pkg/ecco:
32      - cost_gencost_seaicev4.F:
33         reformulate proxy cost as function of sst and local param SEAICE_freeze
34         change cost names from siv4-[sst,vol] to siv4-[deconc,exconc]
35      - add stop statement if old names siv4-[sst,vol] are used
36      - add snapshots + cost reports for atmospheric longwave
37      - remove factor 0.1 in front of wtau[u,v]
38      - replace never used flag ALLOW_TMI_COST_CONTRIBUTION with
39         ALLOW_TMI_SST_COST_CONTRIBUTION
40    o pkg/atm_phys:
41      - add some diagnostics for Short-wave and for convection S/R.
42    o pkg/seaice/seaice_growth:
43      - fix a bug in the lateral melt parameterization for SEAICE_ITD
44        in seaice_growth; tempFrz needs to be computed inside the i/j-loop
45      - rearrange loop order for better vector code in the same code block
46      - rewrite the floeDiameter formula to have fewer divisions
47      -  (miraculously) none of this changes the results of seaice_itd
48    o pkg/smooth:
49      - move param smooth2Ddiffnbt to pkg/ecco
50    o pkg/salt_plume:
51      - salt_plume_frac.F:
52         clean up local param names
53         reformulate (1-frac) to frac; original 1-frac was based on swfrac code
54    o pkg/rw:
55      - add RS version of S/R READ_MFLDS_LEV.
56    o pkg/streamice:
57      - fix the restart test by writing/reading pickup_streamice files.
58    o pkg/seaice:
59      - refine checks for jfnk-related parameters
60      - comment out if statement with SEAICEuseIMEX parameter as long as there
61        is no IMEX code to avoid confusion and surprises
62    
63    checkpoint64u (2014/03/07)
64    o verification/MLAdjust:
65      - rename secondary test suffix:
66         1.leith  -> A4FlxF  + switch to flux-form & add side-drag
67         0.leithD -> AhFlxF  + switch to flux-form
68         0.smag   -> AhVrDv  (use Vorticity-Div. visc form) + add side-drag
69         0.leith  -> AhStTn  (use Strain-Tension visc form) + add side-drag
70    o pkg/mom_vecinv:
71      - remove unused arguments from S/R MOM_VI_HDISSIP & MOM_HDISSIP (as it used
72        to be before mom_calc_visc.F)
73      - skip the call to MOM_CALC_TENSION & MOM_CALC_STRAIN if not needed.
74      - add 2nd copy of vort3 & strain that knows about lateral BC (free/no slip):
75        this is simpler for the adjoint and for diagnostics.
76    o model/src + pkg/momentum:
77      - add input files for  2-D additional Western and Southern cell-edge wall
78         (e.g., to add "thin-wall" where it is =1).
79      - fix sideDrag option for thin-walls with Non-Lin Free-Surf
80        using 2nd hFacZ that is computed from initial (fix domain) hFac
81      - known limitations of thin wall implementation: not yet coded for sigma
82        coords; not working with CD-scheme neither.
83    o pkg/seaice:
84      - rename recently introduced parameters from (wrong name) AB to
85        BDF (backward difference time discretisation)
86      - retire runtime parameters SEAICEuseAB2, SEAICE_abEps
87    o tools/adjoint_options:
88      - remove setting of "OPENAD=true" (now set by command line "genmake2 -oad")
89    
90    checkpoint64t (2014/02/01)
91    o pkg/ecco
92      - add compile flag ALLOW_GENCOST_TIMEVARY_WEIGHT in ECCO_OPTIONS.h and
93        runtime logical flag gencost_timevaryweight to read daily sea-ice sigma
94      - replace hard-coded record number and period which only work for monthly
95        with read-in runtime param that works for other periods (month,day,year)
96    o pkg/thsice
97      - corrected store directive fixes thsice adjoint gradient checks
98    o genmake2 & testreport:
99      - add genmake2 option "-oad" to generate a Makefile for OpenAD built and
100        in this case, use tools/adjoint_options/adjoint_oad as default AD optfile.
101        Update testreport accordingly. No need to set "export OPENAD=true"
102        in adjoint_options/adjoint_oad anymore (will be removed later).
103    o pkg/shelfice:
104      - put T & S shelfice forcing into model surfaceForcing_T,_S (for now,
105        only if SHELFICEboundaryLayer=F); Change model/src/external_forcing.F
106        so that surface forcing applies to k=kSurf if using pkg/shelfice.
107    o pkg/ctrl, pkg/grdchk, pkg/ecco:
108      - Changes to make GENARR more modular (i.e. invisible if not used)
109    o model/src/temp_integrate.F and salt_integrate.F
110      - re-include store directives that were removed on Dec 27th.
111    o model/src/external_forcing_surf.F
112      - add storage directives for EmPmR and PmEpR to avoid recomputation of
113        seaice_model in the adjoint that is problematic when seaice_model is
114        turned off in the adjoint. The resolved issue dated back to July when
115        EXTERNAL_FORCING_SURF call was moved.
116        Update global_ocean.cs32x15/*/output_adm.seaice_dynmix.txt accordingly.
117    o pkg/exf/exf_check.F
118      - fix a small bug again (originally found by Wentao Liu, now found again)
119      - streamline error output
120    o pkg/streamice and aim_v23:
121      - replace a few "_EXCH_XY_RL (" with "_EXCH_XY_RL(", so that
122        Apple's /usr/bin/cpp knows what to do:
123        Apple LLVM version 5.0 (clang-500.2.79) (based on LLVM 3.3svn)
124        Target: x86_64-apple-darwin13.0.0
125    
126  checkpoint64s (2014/01/05)  checkpoint64s (2014/01/05)
127  o tools/adjoint_options:  o tools/adjoint_options:
128    - switch to fastopt.net TAF server (instead of default fastopt.de) for    - switch to fastopt.net TAF server (instead of default fastopt.de) for
# Line 133  o verification: Line 252  o verification:
252  o pkg/cost:  o pkg/cost:
253    - define a "final cost function" for each tile, and use GLOBAL_SUM_TILE_RL    - define a "final cost function" for each tile, and use GLOBAL_SUM_TILE_RL
254      (instead of _GLOBAL_SUM_RL) to get the final cost from all procs & threads:      (instead of _GLOBAL_SUM_RL) to get the final cost from all procs & threads:
255      o this fixes global-sum value if multi-threads (since GLOBAL_SUM_TILE_RL      o this fixes global-sum value if multi-threads (since GLOBAL_SUM_RL
256        cannot be applied to var in common block).        cannot be applied to var in common block).
257      o allows to get results independent of tile-per-proc setting (if using      o allows to get results independent of tile-per-proc setting (if using
258        slower GLOBAL_SUM_SEND_RECV option).        slower GLOBAL_SUM_SEND_RECV option).
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