/[MITgcm]/MITgcm/doc/tag-index
ViewVC logotype

Diff of /MITgcm/doc/tag-index

Parent Directory Parent Directory | Revision Log Revision Log | View Revision Graph Revision Graph | View Patch Patch

revision 1.1930 by jmc, Thu Oct 17 01:30:04 2013 UTC revision 1.1956 by gforget, Thu Jan 9 19:47:55 2014 UTC
# Line 4  $Name$ Line 4  $Name$
4      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
5      ==============================      ==============================
6    
7    o model/src/external_forcing_surf.F
8     - add storage directives for EmPmR and PmEpR to avoid recomputation of seaice_model
9       in the adjoint that is problematic when seaice_model is turned off in the adjoint.
10       The resolved issue dated back to july when EXTERNAL_FORCING_SURF call was moved.
11       Update global_ocean.cs32x15/results/output_adm.seaice_dynmix.txt accordingly.
12    
13    o pkg/exf/exf_check.F
14     - fix a small bug again (originally found by Wentao Liu, now found again)
15     - streamline error output
16    o pkg/streamice and aim_v23:
17      replace a few "_EXCH_XY_RL (" with "_EXCH_XY_RL(", so that
18      Apple's /usr/bin/cpp knows what to do:
19      Apple LLVM version 5.0 (clang-500.2.79) (based on LLVM 3.3svn)
20      Target: x86_64-apple-darwin13.0.0
21    
22    checkpoint64s (2014/01/05)
23    o tools/adjoint_options:
24      - switch to fastopt.net TAF server (instead of default fastopt.de) for
25        AD optfiles adjoint_diva & adjoint_f95 (similar to adjoint_default).
26    o model/src:
27      - remove some unnecessary TAF storage directives in forward_step.F and
28        in dynamics.F (note: not always removed by TAF, e.g., double storage
29        of kappaRU,kappaRV in former version of dynamics.F).
30    o model/src & pkg/ptracers:
31      - call directly GAD_IMPLICIT_R & IMPLDIFF + DWNSLP_APPLY from temp_integrate.F
32        salt_integrate.F and ptracers_integrate.F (instead of from thermodynamics.F)
33        and remove ptracers_dwnslp_apply.F & ptracers_implicit.F
34      - call MATRIX_STORE_TENDENCY_EXP for each tracer (in ptracers_integrate.F)
35      - add fZon & fMer as output argument of S/R GAD_CALC_RHS.
36      - update TAF AD-output of experiments global_ocean.90x40x15 (13 for AD-grad).
37    o useSingleCpuInput separates single-CPU input from single-CPU output;
38        for now only implemented for in exf_interp_read.F
39    o verification/advect_xy:
40      - fix missing EXCH call in local version of ini_salt.F and update output.
41    o momentum diagnostics:
42      - fix which deltaT is used in Total-Tendency diagnostics.
43      - fix typo in diagnostics for momentum tendency from AB.
44    o pkg/seaice/seaice_lsr.F: fix an initialisation bug for the
45        SEAICE_VECTORIZE_LSR_ZEBRA option that lead to NaNs on a NEC-SX8
46    
47    checkpoint64r (2013/12/08)
48    o verification/*/results:
49      - Update reference output of experiments that were passing with just 13 digits
50         (make it easier to detect future changes in results)
51    o model/src & pkg/ptracers:
52      - move calls to GAD_ADVECTION (Multi-Dim advection) from thermodynamics.F to
53        inside temp_integrate.F and salt_integrate.F and from ptracers_advection.F
54        to inside ptracers_integrate.F ; remove ptracers_advection.F
55    o coupling interface pkgs:
56        [atm_compon_interf, ocn_compon_interf & atm_ocn_coupler]
57      - change the config check to test the agreement of Ocean Depth
58        with ATM land/sea mask (instead of ATM orography);
59      - send to coupler the number of coupler time-steps to do for this run:
60        this allows to check for consistency and don't need anymore to be
61        specified in parameter file "data";
62      in coupler:
63      - check consistency of RunOff map versus Ocean Depth and ATM land/sea mask.
64      - improve report to log-file of config setting (pass log-file unit to few S/R)
65    o pkg/compon_communic:
66      - add coupling send/receive for non-tiled integer vector;
67      - add S/R to check and stop if any proc has an error (similar to
68        eesupp/src/stop_if_error.F but single thread and across Comm_World).
69    o pkg/exch2:
70      - in exch2*_get_rx[1,2]: use new list "W2_tileIndex" to replace search
71        through list of all tiles my proc owns.
72    o model/src:
73      - AUTODIFF only: in calc_adv_flow.F, recompute rTransKp (instead of copying
74        from rTrans) to simplify dependencies (no need to store rTrans anymore in
75        calling S/R); this affects AD results at machine truncation level:
76        update AD-output (TAF) of experiments: 1D_ocean_ice_column,
77        bottom_ctrl_5x5 & obcs_ctrl (12 digits for AD grad, same FWD grad).
78    o tools/build_options:
79      - simplify Warnings options (-ieee & -devel cases) in linux_amd64_gfortran
80    o coupling interface pkgs:
81        [compon_communic, atm_compon_interf & ocn_compon_interf]
82      - move declaration of local array "ibuf" out of header file "CPLR_SIG.h"
83        to each S/R that needs it; remove un-used variables.
84      - change component tile registration (cpl_register.F in both compon_interf
85        and mitcomponent_tile_register.F) to pass the full list of tiles
86        information (including bi,bj) in 1 vector (instead of in a bi,bj matrix).
87      - with pkg/exch2: adopt the same convention used for I/O to define mapping
88        towards coupler global array (unless W2_useE2ioLayOut=F):
89         a) can now use different tiling between atm & ocn comp.
90         b) no needs to modify the run-Off map when changing tiling (was needed
91            even if using the same tiling between atm & ocn).
92         c) will allow to run with blank-tiles in 1 component (e.g., for ocean
93            full land tiles); not yet tested.
94      - check for valid mapping from comp. tile to coupler global array
95      - improve report of tile registration results to log file.
96    o pkg/exch2:
97      - in eesupp/src/eeboot.F: move call to W2_EEBOOT before Coupler
98        tile-registration (CPL_REGISTER);
99      - activate (un-comment) definition and setting of "W2_tileIndex" list to
100        store the local bi,bj indices of each tile;
101      - also print bi,bj in local report to log file;
102      - fix pkg/debug/debug_cs_corner_uv.F for the case nSy > 1 (left from
103        Jun 2009 modif of pkg/exch2).
104    o testing on baudelaire:
105      - run 2 tests at a time: no significant slow down (since enough cpu) and
106        get the full set of test done earlier
107      - switch the ifort test to "-devel" ; run the OpenAD test everyday.
108    o model/src/thermodynamics.F and routines called from it:
109      - pkg/gmredi: gmredi_residual_flow.F (replacing gmredi_calc_uvflow.F &
110        gmredi_calc_wflow.F) to update eulerian velocity (input) into residual
111        velocity (outp) by adding bolus velocity.
112      - model/src: calc_adv_flow.F (replacing calc_common_factors.F) to compute
113        mass transport from velocity + lateral grid cell area
114      - rename calc_gt.F to temp_integrate.F (includes call to TIMESTEP_TRACER)
115      - rename calc_gs.F to salt_integrate.F (includes call to TIMESTEP_TRACER)
116     in thermodynamics.F
117      - remove k from thermodynamics.F and move it to temp_integrate.F
118        salt_integrate.F and ptracers_integrate.F (now done inside the tracer
119        loop).
120      - compute locally (in thermodynamics.F) 3-D velocity field that is used to
121        advect tracers; pass it as argument to GAD_ADVECTION, GAD_SOM_ADVECT,
122        PTRACERS_ADVECTION, TEMP_INTEGRATE, SALT_INTEGRATE, PTRACERS_INTEGRATE,
123        GAD_IMPLICIT_R and PTRACERS_IMPLICIT
124      - update AD-output (TAF & OAD) of experiments: 1D_ocean_ice_column,
125        global_ocean.90x40x15, tutorial_global_oce_biogeo and
126        tutorial_tracer_adjsens (+ TLM output).
127    o tools/OAD_support and (verification/*/) code_oad:
128      - OAD_support/cb2mGetModules.csh: add PACKAGES_CONFIG.h in header file to
129        module conversion ; remove unneeded CPP_EEOPTIONS.h.
130      - code_oad/CPP_OPTIONS.h: remove PACKAGES_CONFIG.h and use a more standard
131        version (closer to model/inc/CPP_OPTIONS.h).
132    o model/src:
133      - remove parameter "useOldFreezing" from PARAMS.h and push it to the
134        retired list of parameters (routine FREEZE has been replace by surface
135        freezing (10.yrs ago) and by pkg/frazil (interior freezing).
136    o pkg/gmredi:
137      - add option (GM_CALC_TRANSP_FROM_VEL) to compute transport directly from
138        velocity (same scheme but affects machine truncation) for GM_AdvForm.
139      - update output of FWD experiments: front_relax.bvp,
140        global_ocean.90x40x15.dwnslp, global_ocean.cs32x15 and ideal_2D_oce.
141    
142    checkpoint64q (2013/11/17)
143    o verification:
144      - generate new output on baudelaire (gfortran, -ieee) for OpenAD experiments
145        tutorial_global_oce_biogeo and global_ocean.90x40x15.
146      - generate new output (growth & melt) for seaice_itd experiment after
147        updating the input pickup_seaice files (previously wrong).
148    o pkg/cost:
149      - define a "final cost function" for each tile, and use GLOBAL_SUM_TILE_RL
150        (instead of _GLOBAL_SUM_RL) to get the final cost from all procs & threads:
151        o this fixes global-sum value if multi-threads (since GLOBAL_SUM_TILE_RL
152          cannot be applied to var in common block).
153        o allows to get results independent of tile-per-proc setting (if using
154          slower GLOBAL_SUM_SEND_RECV option).
155      - update accordingly: seaice_cost_final.F, shelfice_cost_final.F,
156        thsice_cost_final.F and ecco_cost_final.F (this one affects lab_sea
157        forward gradients: update output).
158      - update */code_oad/externalDummies.F by adding dummy GLOBAL_SUM_TILE_RL
159        S/R and, for most exp., also comment out GLOBAL_SUM_R8.
160    o pkg/mom_common:
161      - move to pkg/mom_common and model/src (previously in tutorial_deep_convection
162        code) 2nd version of isotropic 3-D Smagorinsky code interface: strain and
163        viscosity are locally declared in dynmics.F and pass as argument to CALC_GW;
164        ensure that all field value that are used are set.
165    o tutorial_deep_convection (smag3d):
166      - add missing scaling in mom_calc_smag_3d.F;
167      - set smag3D_coeff in input.smag3d such that results do not change.
168    o pkg/dic:
169      - change dic_cost.F to compute cost on each tile first and then apply
170        GLOBAL_SUM_TILE_RL: this affects forward gradient of AD experiments
171        tutorial_dic_adjoffline & tutorial_global_oce_biogeo; update output.
172      - remove kLev argument and use GLOBAL_SUM_TILE_RL in tracer_meanarea.
173    o eesupp/src & pkg/mdsio:
174      - remove gather/scatter_vector.F (from eesupp) and mdsio_read/writevector.F
175        (from pkg/mdsio) since they are no longer used for tape IO.
176      - move simple C subroutine "setdir.c" from pkg/compon_communic to eesupp/src
177        (+ keep a copy in pkg/atm_ocn_coupler).
178    o verification/isomip:
179      - split domain in 8 squared tiles (instead of just 2) for FWD, AD & OAD tests.
180    o tools/build_options:
181      - optfile linux_amd64_ifort11, fast (no ieee) case:
182        to get a working restart for all experiments, add "-fp-model source"
183        to FOPTIM (also remove "-opt-streaming-stores auto" <- this is the default).
184    
185    checkpoint64p (2013/10/20)
186    o pkg/autodiff:
187      - adread_adwrite.F: when type and length do not match ALLOW_AUTODIFF_WHTAPEIO
188        criteria, return to simple (default) tape IO format.
189  o pkg/mdsio (+ eesupp/src):  o pkg/mdsio (+ eesupp/src):
190    - rewrite/simplify tape-IO S/R (new S/R MDS_READ/WRITE_TAPE replace    - rewrite/simplify tape-IO S/R (new S/R MDS_READ/WRITE_TAPE replace
191      previous MDSREAD/WRITEVECTOR) with 2 array argument from each type (R4/R8);      previous MDSREAD/WRITEVECTOR) with 2 array argument from each type (R4/R8);
# Line 14  o pkg/mdsio (+ eesupp/src): Line 196  o pkg/mdsio (+ eesupp/src):
196      to globalFile when parameter globalFiles is set to True.      to globalFile when parameter globalFiles is set to True.
197    - switch on useSingleCpuIO in AD experiments: global_ocean.90x40x15 & isomip.    - switch on useSingleCpuIO in AD experiments: global_ocean.90x40x15 & isomip.
198  o pkg/autodiff:  o pkg/autodiff:
199    - adread_adwrite: add a hack for RS arrays (when RS=real*4);    - adread_adwrite.F: add a hack for RS arrays (when RS=real*4);
200      with ALLOW_AUTODIFF_WHTAPEIOdefined, since corresponding (real*4) is      with ALLOW_AUTODIFF_WHTAPEIO defined, since corresponding (real*4) is
201      missing, just add a STOP if array type do not match.      missing, just add a STOP if array type do not match.
202  o pkg/exf:  o pkg/exf:
203    - to allow to use seaice-fraction from pkg/exf in other pkgs than pkg/seaice:    - to allow to use seaice-fraction from pkg/exf in other pkgs than pkg/seaice:
Legend:
Removed from v.1.1930  
changed lines
  Added in v.1.1956
  ViewVC Help
Powered by ViewVC 1.1.22