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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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o pkg/mom_common: variable horiz. viscosity in NH code |
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- move horiz-viscosity 3-D arrays viscAh_W & viscA4_W (used in calc_gw.F) |
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from model/inc/NH_VARS.h to pkg/mom_common/MOM_VISC.h |
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- store in common block (in MOM_VISC.h) logical parameters: useHarmonicVisc, |
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useBiharmonicVisc & useVariableVisc. |
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- fix old bug (already in 1rst implementation of variable horizontal viscosity |
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in calc_gw.F, version 1.27, 2006/06/20): |
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horizontal bi-harmonic viscosity in gW was missing when wiscA4W=0 |
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even if variable bi-harmonic viscosity (e.g., viscA4Grid) was non-zero. |
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- change background horiz viscosity in vertical momentum (gW) to always be |
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viscAhW,viscA4W (instead of switching to viscAhD, viscA4D when using |
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any type of variable viscosity, e.g., viscAh/4Grid) |
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- change default value of viscAhW,viscA4W to viscAhD,viscA4D (instead of |
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viscAh,viscA4) which default to viscAh,viscA4 : this avoid missing |
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horiz. viscosity in W eq when just setting viscAhD/Z,viscA4D/Z (since |
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default viscAh,viscA4 is zero). |
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o model/src: |
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- extend length of drC & recip_drC from Nr to Nr+1. |
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o Divided Adjoint (DIVA) with MPI: |
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- genmake2: do not create local ./mpi_headers dir when no file to copy into. |
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- remove option ALLOW_DIVIDED_ADJOINT_MPI (replaced by ALLOW_DIVIDED_ADJOINT |
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and ALLOW_USE_MPI) from model/src code and from ECCO_CPPOPTIONS.h. |
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checkpoint64k (2013/07/23) |
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o tools/OAD_support: |
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- avoid the need for file "oadtempflile" in insertTemplateDir.bash |
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and remove it from genmake2. |
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o tools/build_options: |
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- remove MPI_HEADER_FILES_INC setting (no longer used) and comment out |
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MPI_HEADER_FILES list (let genmake2 find the missing headers) |
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o verification/halfpipe_streamice: |
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- change to driving stress formulation; update both Fwd & AD output. |
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o tools/genmake2 and Divided Adjoint with MPI: |
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- remove default setting of MPIINCLUDEDIR from $MPIHOME (always been broken); |
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- only create local ./mpi_headers dir if using MPI and MPIINCLUDEDIR is set; |
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- add new variable (LOCAL_MPI_HEADERS, replace MPI_HEADER_FILES_INC) in |
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Makefile, which is set by genmake2, and check which mpi-headers are needed. |
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Note: need to update adjoint_options/adjoint_diva_mpi accordingly. |
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- update target "CLEAN" (to also remove ./mpi_headers/ dir). |
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o testreport: |
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- changes for Divided Adjoint Run: when file "run_ADM_DIVA" is present, |
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perform additional runs (number of additional runs is "add_DIVA_runs" taken |
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from file run_ADM_DIVA ; should match "nchklev_3" in file "code_ad/tamc.h"). |
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o verification/lab_sea (AD test): |
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- change to test Divided Adjoint Run in this set-up (both standard AD test |
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and 2 secondary AD test: noseaice + noseaicedyn); drop the evp AD test. |
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o pkg atm_ & ocn_compon_interf: |
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- remove cpl_earlyExpImpCall=F option (was mainly a hack added for the old |
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staggerTimeStep implementation) and disable (retired) corresponding |
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parameter. |
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o pkg/offline: |
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- comment out unused field-array: ICEM, ConvectCount, hflx[01], icem[01]; |
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- add S/R OFFLINE_CHECK to print offline parameter summary |
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and stop if loading a file that is not used; |
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- enable to calculate GMRedi tensor, KPP mixing and convective index |
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when the corresponding file(s) is/are not specified (but pkg is used). |
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- comment out resetting of monitorFreq (to endTime) since it still useful |
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for monitoring CFL numbers and checking offline fields. |
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o OpenAD: |
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- do not define OAD_DEBUG (in tools/adjoint_options/adjoint_oad) to get |
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smaller standard output) and generate new (smaller) output (on baudelaire |
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using gfortran with -ieee) for exp. tutorial_tracer_adjsens |
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o model/src: |
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- call EXTERNAL_FORCING_SURF outside bi,bj loops (in do_oceanic_phys.F), |
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(where external_forcing_adjust was called) and change list of arguments; |
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- merge external_forcing_adjust.F into external_forcing_surf.F |
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- put surface relaxation of SST & SSS in new S/R (forcing_surf_relax.F) |
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which also contains balancing surface relaxation (ALLOW_BALANCE_RELAX, |
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previously in file "balance_relax.F", now removed); remove corresponding |
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arrays in FFIELDS.h. |
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- EXTERNAL_FORCING_SURF is now called when using pkg/offline; implement |
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a hack for getting back surfaceForcingS (loaded from file) when using |
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ALLOW_OLD_VIRTUALFLUX (pkg/dic, in DIC_OPTIONS.h) in offline set-up. |
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- update output of AD test experiment global_ocean.cs32x15.seaice_dynmix |
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(was getting only 11 digits for AD-grad, due to different truncation |
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error in AD code). |
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checkpoint64j (2013/07/04) |
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o pkg/offline: |
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- to enable the use of other features with pkg offline (e.g., obcs), |
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also call S/R DO_OCEANIC_PHYS in offline run - more modifs to come. |
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- comment out "allowFreezing" (now active) in 2 offline testing exp. |
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o pkg/exf ALLOW_RUNOFTEMP |
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- fix sign and make compatible with temp_EvPrRn .NE. UNSET_RL |
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- ahdded RUNOFTEMP test to verification/global_ocean.cs32x15/input.seaice |
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- changes verification/global_ocean.cs32x15/results/output.seaice.txt |
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o pkg/atm_phys: |
o pkg/atm_phys: |
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- allows to add some damping on uVel,vVel (strength only function of k). |
- allows to add some damping on uVel,vVel (strength only function of k). |
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o verification, ad-tests: |
o verification, ad-tests: |
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