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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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o utils/matlab: |
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- fix tile-offset in rdmnc.m when output was produced using EXCH2. |
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- update cs_grid/bk_line scripts to use load_grid.m (in utils/matlab) |
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instead of local script "load_cs.m". |
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o pkg/seaice: |
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- fix a serious bug in seaice_fgmres.F, s/r seaice_scalprod, connected |
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to the scalarProductMetric and the unrolling. By chance this does not |
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change the verification experiment, because of the particular domain |
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decomposition |
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o pkg/diagnostics: |
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- change default missing_value from UNSET_RL to -999. |
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o pkg/layers: improve vectorization of layers_fluxcalc.F |
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- step 1: split loops, make TatU/V 2D arrays. This alone reduces the cpu |
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time spent in this routine by more than a factor of 3 on an NEC-SX8 |
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- step 2: replace search algorithm by a bisection algorithm found in |
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Press et al. Numerical Recipes in Fortran. This algorithm can be |
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vectorized and finds the correct bin in approx. log2(Nlayers) steps. |
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For now, use this algorithm only for TARGET_NEC_SX defined. |
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- moved the search algorithm into a separate subroutine, that is kept |
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within the same file for automatic inlining. |
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- modified catching potential errors |
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o pkg/ecco: |
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- add compile switches ALLOW_SHALLOW_ALTIMETRY and ALLOW_HIGHLAT_ALTIMETRY. |
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o model/src, pkg/autodiff, pkg/ctrl, pkg/grdchk : |
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- modifications for ALLOW_GENTIM2D_CONTROL |
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-- forward_step.F, the_main_loop.F : pass options and arrays for adjoint tapes. |
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-- load_fields_driver.F : add call to CTRL_MAP_GENTIM2D( myTime, myIter, myThid ) |
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-- add xx_gentim2d0/1 in ctrl_ad_check_lev1_dir.h checkpoint_lev1_directives.h etc |
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-- use ctrl_swapffields.F (new) instead of exf_SwapFFields.F in ctrl_get_gen.F |
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o model/src: |
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- account for moist thermodynamics in (dry) potential temperature equation; |
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update results of experiments: aim.5l_cs (x2), fizhi-cs (std + aqualev) |
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and cpl_aim+ocn. |
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- also switch to standard compiler (gfortran, was using ifort previously) |
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for fizhi-cs experiments reference output. |
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o pkg/ctrl: |
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- 1st step toward generic time-varying control variable (2D) via CPP option |
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ALLOW_GENTIM2D_CONTROL |
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- note new namelist ctrl_nml_genarr in data.ctrl |
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o verification/global_ocean.cs32x15: |
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- switch off OLD_THSICE_CALL_SEQUENCE (both forward and AD code) to use new |
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thsice calling sequence and update "output.icedyn.txt" output file. |
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o pkg/ptracers: |
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- from Ryan A.: code to allow to restart a tracer at regular time interval |
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specifying a reset frequency and a reset-phase (for each tracers). |
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o pkg/thsice: |
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- implement new sequence of calls for thsice+seaice: |
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previously: ice-Dyn,ice-Advect,ice-Thermo(thsice) |
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new sequence: ice-Thermo(thsice),ice-Dyn,ice-Advect |
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- allows (with temporary CPP option "#define OLD_THSICE_CALL_SEQUENCE" |
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in CPP_OPTIONS.h) to recover old sequence; |
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- update diagnostics for Intermediate State thsice diagnostics: now filled |
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just before advection (instead of just after advection in old sequence); |
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- update output of experiment offline_exf_seaice (standard test); |
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- in global_ocean.cs32x15 exp., postpone output.icedyn.txt update |
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by setting #define OLD_THSICE_CALL_SEQUENCE in CPP_OPTIONS.h |
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o pkg/aim_v23: |
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- use tiled array for aim_CO2 and surface wind speed for export to coupler; |
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- use standard pkg/mdsio routines to read & write CO2 pickup file; |
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- in-line S/R AIM_AIM2DYN_EXCHANGES in aim_do_physics.F; |
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- Implement new sequence of calls for seaice advection (with thsice and |
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seaice diffusion): do ice advection after ice-Thermodynamic (previously |
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was done before); change aim_do_physics.F (split the bi,bj loops block); |
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- use same CPP option (OLD_THSICE_CALL_SEQUENCE) to recover old sequence; |
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o pkg/thsice: |
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- add a missing EXCH of sIceLoad in thsice_main.F (ocean set-up) for the case |
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where just seaice diffusion is used without seaice-dynamics. |
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checkpoint64c (2013/01/18) |
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o pkg/seaice: |
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- add a parameter JFNKres_tFac that can replace JFNKres_t |
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(= JFNKres_tFac*JFNKresidual before JFNK solver) |
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- add a line search option to the JFNK solver |
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- move update of u/vIce and computation of initial residual into a separate |
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routine (same file); makes the code a little easier to read (?) |
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- the line search requires computation of the residual and for some reason |
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I cannot do the update of u/vIce at the beginning of the Newton loop |
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without changing the results, so we move computation of the new residual |
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also to the end of the Newton loop, even without the line search |
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o pkg/mdsio: |
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- write missing value (corresponding to undefined array value) to meta files; |
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skip this if missing value is one (UNSET_RL would be a better value for the |
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case of undefined missing value but it's current the default missing-value); |
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Also update mdsio_read_meta.F (reading timeInterval & missing-value). |
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o pkg/exf & thsice: |
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- for diagnostics purpose, fill-up and update Qsw array (+ fill the |
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diagnostics) even when SHORTWAVE_HEATING is #undef; |
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o verification/cfc_example: |
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- turn on pkg/layers with pkg/diagnostics (to test pkg/layers and to |
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illustrate how to use it). |
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o verification/offline_exf_seaice: |
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in input: add SEAICErestoreUnderIce=.TRUE., and reduce size of forcing |
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files to only one time-record. |
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in input.thermo: narrow the 2 bands of low initial ice-concentration near |
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N & S edges; switch on SEAICErestoreUnderIce=T; use pkg/diagnostics for |
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snapshot output; same mcPheePiston value as in thsice with |
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surf-current=0.2m/s. |
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in input.thsice: similar set-up as in input.thermo (channel with same seaice |
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initial conditions). |
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o verification/cfc_example: |
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- update file "data" with more standard choice (default rotationPeriod, |
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exactConserv=T, reduce ivdc_kappa to 10, remove multiDimAdvection=F, |
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set deltaTFreeSurf to deltaTtracer) and update the output. |
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o pkg/layers: |
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- fix bolus part so that it compiles with #undef GM_BOLUS_ADVEC; |
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- ensure that "layers_bolus" is switched to False when useGMRedi=False. |
| 113 |
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o verification/offline_exf_seaice: |
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- set all {field}period to zero for constant-in-time forcing (not tested |
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anywhere else). |
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o verification/offline_exf_seaice: |
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- dyn_lsr : use pkg/seaice S/R (instead of pkg/thsice) to advect sea-ice; |
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- dyn_jfnk : use pkg/thsice S/R (instead of pkg/seaice) to advect sea-ice. |
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o model/src: |
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- implement Finite-Volume method for (hydrostatic) presure gradient |
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from S.-J. Lin (QJRMS 1997), for atmosphere using sigma-coordinate. |
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o pkg/seaice: implement EVP* by Lemieux et al. (2012). |
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- In order to be compatible with the default EVP code, this requires changing |
| 124 |
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the EVP code around a little; and because any small change immediately |
| 125 |
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breaks the lab_sea.hb87 verification experiment, the reference output is |
| 126 |
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updated two times (each time the remaining aggrement was only 2 digits): |
| 127 |
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- after replacing 1/dt by 1*recip_dt with a precomputed recip_dt |
| 128 |
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- after replacing 1/(1+0.5*dt/tau) by a/(a+1), with a=2*tau/dt |
| 129 |
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The adjoint test lab_sea.evp also needed to be updated. |
| 130 |
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- Turn on EVP* by setting SEAICE_deltaTevp as before, and setting |
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SEAICEuseEVPstar=.true.; for EVP* SEAICE_deltaTevp does not need to be |
| 132 |
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a factor of SEAICE_deltaTdyn, and you can set the number of EVP steps |
| 133 |
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explicitly with SEAICEnEVPstarSteps (thereby overriding the default of |
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INT(SEAICE_deltaTdyn/SEAICE_deltaTevp)). Controlling EVP* is deliberately |
| 135 |
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kept obscure, because I need to test it a little more. |
| 136 |
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o pkg/cheapaml: |
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- fix few incorrect type (_RL/_RS) in subroutine calls. |
| 138 |
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o pkg/seaice: |
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- new S/R SEAICE_MAP_RS2VEC (similar to SEAICE_MAP2VEC) to map _RS arrays |
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to _RL vector; this fixes JFNK code when compiling with "-use_r4" option. |
| 141 |
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o model/src: |
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- add a warning if using select_rStar=2 with nonlinFreeSurf <> 4; |
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change (in input_ad*/data) select_rStar from 2 to 1 for AD verification |
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experiments global_ocean.cs32x15 & tutorial_tracer_adjsens (+ update output) |
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o pkg/cheapaml: |
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- replace "273.1 _d 0" by celsius2K in pkg/cheapaml/cheapaml.F and |
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update output of experiment cheapAML_box. |
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- store in CHEAPAML.h coeffs ssq[0:2] for saturation specific humidity, |
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and set them only in one place (cheapaml_readparms.F). |
| 150 |
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- replace "273.16 _d 0" by celsius2K & replace "3.14159 _d 0" by constant "PI" |
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- remove re-setting of main-model parameter "celsius2K" (in cheapaml_readparms) |
| 152 |
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and re-setting of cheapAML params "lath" & "p0" (in cheapaml_init_varia). |
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o model/src/the_main_loop.F: |
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- fix revision 129 : need both ALLOW_ECCO and ALLOW_ECCO_EVOLUTION. |
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o pkg/seaice: |
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- remove legacy branch code. |
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- retire SEAICE_GROWTH_LEGACY and SEAICE_CAP_HEFF accordingly. |
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o verification/*/code*/SEAICE_OPTIONS.h: |
| 159 |
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- remove documentation for retired CPP flags (SEAICE_GROWTH_LEGACY, |
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SEAICE_CAP_HEFF). |
| 161 |
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o pkg/cheapaml: |
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- use standard routine (S/R GET_PERIODIC_INTERVAL) to decide when it is time |
| 163 |
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to load new forcing fields. |
| 164 |
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- add missing "_d 0" where it's needed; + some editing (improve indentation). |
| 165 |
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- remove switch to "-r8" compiler option (no longer needed) in verification |
| 166 |
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cheapAML_box, keep same output (small trucation error differences). |
| 167 |
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o verification/offline_exf_seaice: |
| 168 |
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- add thermodynamics only test. |
| 169 |
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o verification/cheapAML_box: |
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- split the domain in 8 (2x4) tiles; add MPI and multi-threaded test; |
| 171 |
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keep same output (same 14 digits for cg2d). |
| 172 |
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- switch on "-r8" compiler option (some numerical values are missing |
| 173 |
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the "_d 0") and update output (only 6 digits for cg2d were preserved). |
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|
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checkpoint64b (2012/12/24) |
checkpoint64b (2012/12/24) |
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o pkg/cheapaml: |
o pkg/cheapaml: |
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- remove un-used variables (Qnet,EmPmR) from pickup files. |
- remove un-used variables (Qnet,EmPmR) from pickup files. |
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