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revision 1.1720 by gforget, Tue Aug 21 19:50:23 2012 UTC revision 1.1792 by gforget, Thu Dec 27 14:16:49 2012 UTC
# Line 4  $Name$ Line 4  $Name$
4      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
5      ==============================      ==============================
6    
7  o pkg/grdchk :  o verification/offline_exf_seaice :
8      - add thermodynamics only test.
9    
10    checkpoint64b (2012/12/24)
11    o pkg/cheapaml:
12      - remove un-used variables (Qnet,EmPmR) from pickup files.
13      - store tendency of advected variables into cheapaml pickup file
14        and fix the AB-2 restart.
15    o verification/offline_exf_seaice and lab_sea adjoint:
16      - switch to new code (#undef SEAICE_GROWTH_LEGACY).
17      - switch to 4 time steps in offline, consistent with lab_sea.
18      - match parameters from SEAICE_GROWTH_LEGACY branch in data.seaice.
19      - update results after change of experiment seaice.
20    o pkg/seaice:
21      - remove option SEAICE_MULTICATEGORY; has been replaced with run-time
22        parameter SEAICE_multDim. Issue a warning if SEAICE_MULTICATEGORY is
23        still defined since SEAICE_multDim needs to be set to MULTDIM value (from
24        SEAICE_SIZE.h) to recover previous #define SEAICE_MULTICATEGORY default.
25    o model/src:
26      - add run-time parameter to select CG2D solver minimum-residual solution
27        (in case of a poor convergence).
28    o pkg/seaice/seaice_lsr.F
29      - move calculation of matrix coefficients into new
30        S/R SEAICE_CALC_LSR_COEFFS; for now this routine remains in the same
31        file; the main purpose of this change is to be able to reuse the code
32        in S/R SEAICE_PRECONDITIONER
33      - modify the computation of the residual so that the mass of sea-ice
34        is not used twice; this simplifies the calculations, but since
35        the residual is never used except when LSR_mixIniGuess.ge.4---and this is
36        not tested in testreport---this does not affect the testreport results.
37    o verification/seaice_obcs:
38      - disable SEAICE_GROWTH_LEGACY; reset input files to match those of
39        verification/lab_sea/input.salt_plume; changes results/output.txt*
40    o model/src:
41      - adapt quasi-hydrostatic formulation to work with p or p* coordinate.
42    o pkg/seaice:
43      - improve description of parameters in seaice_fgmres.F and start
44        cleaning up the code
45      - change name of SCALPROD to SEAICE_SCALPROD and modify meaning of
46        second argument
47      - add a metric based on grid cell area to SEAICE_SCALPROD; update
48        results of offline_exf_seaice.dyn_jfnk
49      - compute initial residual norm in seaice_jfnk based on SEAICE_SCALPROD
50    o pkg/aim_v23:
51      - fix an other bug in dissipation heating (grid-cell area was missing).
52    o model/src + pkg/seaice:
53      - add global (multi-tile) linear solver for pair of tri-diagonal system
54        along X and Y lines, respectively for U and V component.
55        Note: 1) MPI and cube-exchange not yet coded.
56            2) probably not accurate for poorly conditioned / large size problem.
57      - add option for SEAICE_LSR to use global (multi-tile) tri-diagonal solver;
58        default: not compiled and not used.
59    o pkg/seaice:
60      - first attempt at a multi-threaded fgmres solver for the JFNK solver:
61        introduce bi/bj loops and use global_sum_tile_rl instead of
62        mpi_allreduce in seaice_fgmres.F
63      - improve diagnostics output for fgmres solver (seaice_fgmres.F)
64      - replace a few unnecessary goto statements by if-blocks  (seaice_fgmres.F)
65      - add a verification experiment for JFNK in offline_exf_seaice
66    o verification:
67      - change (for now, only fwd test) offline_exf_seaice experiment:
68        use a re-entrant channel with idealized coastline (trapezoidal shape)
69        at southern boundary to explore seaice dynamics and thermodynamics
70        with simple forcing. Main set-up has dynamics+thermo and SST relaxation;
71        secondary test (input.thsice) use thermodynamics only with SST relaxation.
72      - add seaice-dynamics only secondary test using LSR and pkg/thsice advection.
73    o pkg/exf:
74      - disable "sstExtrapol" when Nr=1
75    o verification:
76      - add new experiment "cheapAML_box" (simple 1 layer set-up from Bruno Deremble)
77        to test pkg/cheapaml.
78    o pkg/aim_v23 & pkg/shap_filt:
79      - fix dissipation heating (erroneous gravity multiplication factor).
80    o pkg/seaice:
81      - remove unused field pressPre from jfnk solver
82      - rename two subroutines in seaice_preconditioner.F
83    o eesupp/src:
84       - S/R MDSFINDUNIT avoids reserved unit numbers (scrUnit1, eeDataUnit ...)
85    o pkg/seaice/seaice_preconditioner.F: fix preconditioner once again
86       - remove wrong parts of the rhs and the lhs (were in there
87         because I did not understand the concept of this preconditioner)
88       - add an exchange between u- and v-sweep. This increases communication
89         by a factor of two but improves the convergence of jfnk. Ideally,
90         one would like the u- and v-sweep to be independent. So far within
91         undocumented ifdefs
92       - reorganize the extra computations for printing the residuals
93    o tools/genmake2:
94      - comment out the "mpif.h" include in NetCDF test programm (for MPI built)
95        since it's not necessary (and was preventing to use MNC in some cases).
96    
97    checkpoint64a (2012/11/16)
98    o pkg/autodiff:
99      - improve pkg-internal logical parameter switch (inAd/inFwd mode) so that
100        autodiff_readparms.F no longer depends on calling order (within
101        packages_readparms.F) and no longer requires to include ${PKG}_PARMS.h):
102        rename param turnFreeDriftInAdMode to SEAICEuseFREEDRIFTswitchInAd
103        and change param SEAICEuseDYNAMICSinAdMode to SEAICEuseDYNAMICSswitchInAd.
104    o pkg/obcs:
105      - adding tidal velocity forcing capability to obcs
106        for usage example, see verification/seaice_obcs/input.tides
107    o pkg/seaice:
108      - turn the LSR-relaxation parameters WFAU/V into runtime parameters
109        SEAICE_LSRrelaxU/V
110      - introduce runtime parameter SEAICEetaZmethod (=0 by default)
111    o pkg/aim_v23:
112      - implement heating from friction (bottom friction and stratospheric drag).
113    o pkg/shap_filt:
114      - fix diagnostic "SHAP_dKE" (was 2 time smaller); implement heating from
115        dissipation but only for Shap_funct=2, active when addFrictionHeating=T.
116    o model/src:
117      - move AddMass common block from DYNVARS.h to FFIELDS.h; allow to read-in
118        time-constant addMass field from file (addMassFile);
119      - support for heating due to friction (and Kinetic Energy dissipation):
120        add option, run-time switch and 3-D field array + support code ; each pkg
121        or S/R can add heating contribution (if there is a sink of KE); the sum is
122        accounted for as a Temperature tendency term (EXTERNAL_FORCING_T).
123    o pkg/seaice:
124      - complete merge of ITD code into seaice_growth.F
125        from MITgcm_contrib/torge/itd/code/
126        no verification so far, but Torge Martin tested
127        "1-D test case and Beaufort set up;
128        deliver okay results after 1 model year."
129      - complete merge of SEAICE_SIZE.h into all relevant routines
130      - move computation of eta at Z-points into calc_viscosities
131        + introduce global field etaZ
132        + add different methods for computing etaZ, for now the old
133          method (simple averages of eta to Z-points) is hardwired
134        + replace etaMeanZ by etaZ in seaice_lsr, seaice_calc_residual,
135          seaice_preconditioner
136      - simplify computations for SEAICE_ZETA_SMOOTHREG
137      - seaice_preconditioner:
138        + replace one remaining press by pressLoc (mistake)
139        + adjust printing of residuals
140      - improve I/O of diagnostics of JFNK in seaice_jfnk.F:
141        + add (SEAICE.h) and rename some counters (initiliased in
142          seaice_init_fixed.F)
143        + add _BEGIN/END_MASTER (myThid)  around print statements
144        + print total number of iterations and failures over SEAICE_monFreq
145          interval to STDOUT
146      - move control over output-messages by fgmres to seaice_jfnk to save
147        some operations
148      - move resetting initial guess for fgmres outside of seaice_fgmres_driver
149        in order to make restarts with sol .ne. zero (fgmres with restarts)
150        (seaice_jfnk.F, seaice_fgmres.F)
151      - seaice_calc_l/rhs.F: replace maskW/S by maskInW/S; this fixes
152        a serious convergence problem when open boundaries are involved
153    o pkg/ggl90: fix computation of control volumes for the case of
154      ALLOW_GGL90_HORIZDIFF (probably not used very often): move control volumes
155      up half a grid cell from C-centered to W-centered (pointed out by C. Eden)
156    o pkg/seaice: simplify seaice_evp by avoiding use of extra fields u/vIceC
157    o pkg/autodiff
158      - Add inAdMode switch for SEAICEuseDYNAMICS:
159        SEAICEuseDYNAMICSinAdMode
160        (extend logic in ADAUTODIFF_INADMODE_SET)
161    o pkg/seaice
162      - Step 1 of merging ice-thickness distribution (ITD) code from
163        MITgcm_contrib/torge/itd/ (author: Torge Martin)
164        The code implements concept laid out in Thorndike et al. (1975);
165        code is enabled via CPP flag SEAICE_ITD
166        nITD (in SEAICE_SIZE.h) defines number of ice thickness categories;
167        code is not complete yet!!
168      - SEAICE_SIZE.h now included in almost all seaice routines
169    o verification (using seaice):
170      - switch back seaice-dynamics (+ lower SOLV_MAX_ITERS) in ADM exp.
171        global_ocean.cs32x15.seaice ; update results.
172      - compile B-grid dynamics in FW test exp 1D_ocean_ice_column ;
173      - compile C-grid dynamics with #define SEAICE_ALLOW_JFNK in FW test exp
174        offline_exf_seaice (previously compiling B-grid).
175    o pkg/exf:
176      - fix some STOP conditions in exf_check.F (from Aug 28, modifs did not allow
177        to specify neither just 1 comp of wind or wind-stress, nor no surface momentum
178        forcing): just replace CPP option ALLOW_ATM_WIND with run-time param useAtmWind.
179    o pkg/layers (adjust changes from Sept 19):
180      - do snap-shot output and fill diagnostics from inside iLa loop (layers_calc.F)
181        this allows to remove "layers_maxNum" dimension from all layers arrays.
182    o pkg/layers (adjust changes from Sept 19):
183      - remove ALLOW_LAYERS_OUTPUT ; fix snap-shot and time-ave output ;
184      - snap-shot extended to all type of layers (not just the 1rst type);
185      - remove layers variables when corresponding CPP option is undef.
186    o pkg/layers:
187      - rename pkg/layers variable and add new output (layer exist & un-weighted
188        velocity in layer)
189    o pkg/seaice:
190      - simplify (?) ocean-drag coefficent computations by using
191        the same routine in all three solvers (saves some code lines)
192      - remove global fields DRAGA and DRAGS from C-grid code and
193        declare them locally in lsr.F (the only place where they are
194        still used)
195      - update AD output of lab_sea.evp (very sensitive anyway).
196    o pkg/seaice: add Jacobian-free Newton Krylov solver for ice dynamics
197      (Lemieux et al. 2010, 2012). Turn on with the usual SEAICE_ALLOW_JFNK
198      and SEAICEuseJFNK=.true. A few things to note:
199      - involves a FGMRES, that is parallel but very inefficient,
200        because of many scalar products (global sums) in the Gram-Schmidt
201        orthogonalization method. Needs to be replaced. Original code
202        from J.-F. Lemieux
203      - preconditioner for FGMRES is a stripped down version of LSOR
204      - SOLV_MAX_ITERS is now used for LSOR as a solver and as a
205        preconditioner. For the preconditioner, the default is set to 10.
206      - Jacobian times vector is computed with finite differences
207      - marginally related to JFNK-solver: add a smooth regularization for
208        zeta with tanh that will improve convergence (Lemieux and Tremblay,
209        2009) for any implicit solver (not implemented for EVP because EVP
210        does not need this regularization in the first place). Define
211        SEAICE_ZETA_SMOOTHREG in SEAICE_OPTIONS.h to use.
212    o eesupp/src:
213      - check in genmake2 that intrinsic S/R flush is available.
214      - add S/R to flush IO unit (if intrinsic S/R flush is available)
215      - flush standard & error msg unit before MPI termination
216      - if debugMode, flush IO unit after printing msg
217    o pkg/ctrl:
218      - ctrl_unpack.F, ALLOW_GENARR3D_CONTROL code: fix missing argument in call
219        to ctrl_set_unpack_xyz.
220    
221    checkpoint64 (2012/10/09)
222    o pkg/shelfice
223      - in mom_fluxform.F, mom_vecinv.F:
224        CALL SHELFICE_V_DRAG(bi,bj,k,vFld,KE,KappaRU,vF,myThid)
225        Bug fix KappaRU -> KappaRV
226        does not change verification/isomip but may change other setups
227        (presumably constant KappaRU=KappaRV)
228      - fix diagnostics SHIU/Vdrag (thanks to Tom Millgate)
229    o pkg/obcs:
230      - fixed some indexing bugs in obcs_seaice_sponge.F
231      - added obcs relaxation subroutines for HSALT and HSNOW
232      - changes verification/seaice_obcs/results/obcs_seaice_sponge.F
233    o pkg/seaice:
234      - add "multicategory" parameterization for snow in analogy to ice,
235        default is off for now.
236    o pkg/obcs:
237      - added obcs_seaice_sponge.F for obcs relaxation of seaice variables;
238        see verification/seaice_obcs/input.seaiceSponge for example application.
239      - remove local commom bloc "OBCS_GLOBAL" in obcs_readparms.F and do all the OB
240        index setting by master-thread. This fix multi-threads Pb in previous modifs.
241    o pkg/layers :
242      - add diagnostics to pkg/layers
243      - move the meat of pkg/layers from layers_calc.F to layers_fluxcalc.F
244        (from R.Tulloch). Layers_calc.F now calls layers_fluxcalc.F accordingly.
245    o pkg/generic_advdiff/gad_implicit_r.F :
246      - fix ADVr diagnostics in case of both implicit vertical advection and diffusion.
247    o pkg/seaice/seaice_growth.F:
248      - fix SItflux diagnostics in virtual salt flux + balanceEmpmr case.
249    o pkg/obcs:
250      - change default setting of OBCS_UVICE_OLD from defined to undef;
251      - use new parameter OB_indexNone for null index value (instead of hard-coded 0)
252        in all pkg/obcs code and in other pkgs; remove k loop in obcs_check_depths.F;
253      - pass OB_indexNone as (new) argument to S/R CTRL_MASK_SET_[X,Y]Z;
254      - change OB null index value (OB_indexNone) to -99 ; this fix the problem
255        with Southern & Western OB at a tile edge (at least in a simple set-up).
256    o pkg/obcs:
257      - change settings of OB index in case OB coincides with tile edge (shared by
258        2 tiles), so that common OB location is registered by both tiles (instead of
259        only 1). However, for Southern and Western OB, index value = 0 is not
260        recognized as valid OB index (=default null value) and needs to be fixed.
261      - modify accordingly OBCS_BALANCE_FLOW and OBCS_MONITOR (avoid double counting)
262      - new parameter "OB_indexNone" for null index value (for now, still zero)
263        to replace hard-coded null index value of zero.
264    o pkg/exch2:
265      - improve W2_USE_E2_SAFEMODE (faster) and W2_E2_DEBUG_ON:
266        always check buffer-size (but outside the loop); move checking for valid
267        index from W2_USE_E2_SAFEMODE to W2_E2_DEBUG_ON; in W2_E2_DEBUG_ON,
268        print each tile and point connection only if |W2_printMsg|>= 2 and 3.
269    o pkg/ctrl (pack & unpack):
270      - in ctrl_pack.F & ctrl_unpack.F, use the same local file-name variable
271        (locally defined) for different variables (+ remove the variable-specific
272        file name in CTRL_GENARR.h). For now, only implemented for GENARR2/3D_CONTROL
273        (to be extended to other local file names in ctrl.h).
274    o pkg/flt:
275      - add a FLT_Iter0 option (similar to PTRACERS_Iter0).
276    o pkg/mdsio:
277      - fix missing STOP in mdsio_readvec_loc.F (case ioUnit=0) when file is missing
278    o tools/genmake2:
279      - add similar dependences for target EXE_AD & EXE_FTL as we have for EXECUTABLE
280        (added by Alistair in version 1.51 for building without make depend);
281      - remove Header files list (H_SRC_FILES) from the dependence of targets
282         ad_input_code.f & ftl_input_code.f (not clear why it was added in the first
283        place in version 1.23): this save going through staf when unrelated header
284        file has been modified.
285       Note: for an intermediate target (e.g., ad_input_code.f or adtaf) without
286        "make depend" step, still need to do "make links" before "make adtaf".
287    o eesupp/src (+ few pkg src files) & genmake2:
288      - finish to remove ALWAYS_USE_MPI in source code that TAF does not see;
289      - no longer set ALWAYS_USE_MPI in Makefile (was done by genmake2).
290      - improve genmake2 checking for ALLOW_${PKG} in CPP_OPTIONS.h files (distinguish
291         upper/lower case ; account for space between "#" and undef/define)
292    o pkg/flt (with exch2):
293      - cleaning: fix so that it compiles; move remaining MPI calls out of flt_exch2.F;
294      - simplify threads synchronisation; fix (many issues) multi-threaded with MPI.
295    
296    checkpoint63s (2012/09/05)
297    o pkg/ecco:
298      - remove #ifdef ALLOW_SMOOTH_CORREL3D brackets.
299      - add more relevant #ifdef ALLOW_SMOOTH ones.
300      - sort out useAtmWind, useSMOOTH, ctrlSmoothCorrel2D.
301    o pkg/ctrl:
302      - CTRL_OPTIONS.h : document CPPs related to smoothing; ALLOW_SMOOTH_CORREL2D/3D,
303        ALLOW_CTRL_SMOOTH, ALLOW_SMOOTH_CTRL2D, ALLOW_SMOOTH_CTRL3D.
304      - ctrl.h : document run time params doInitXX, doMainPack, doMainUnpack, doPackDiag,
305        doSinglePrecTapelev (audodiff param!), ctrlSmoothCorrel2D (new) and
306        ctrlSmoothCorrel3D (new).
307        The added ctrlSmoothCorrel2D/3D replace the old ALLOW_SMOOTH_CORREL2D/3D CPP.
308      - ctrl_readparms.F : initialise ctrlSmoothCorrel2D/3D and read from namelist.
309      - ctrl_init.F ctrl_pack.F ctrl_unpack.F : switch off ustress/vstress
310        controls when useAtmWind, and vice versa.
311      - ctrl_map_ini_ecco.F : UVEL0, VVEL0, edtaux, edtauy cannot be smoothed as tracers.
312      - ctrl_get_gen.F : replace #ifdef ALLOW_SMOOTH_CORREL2D with
313          #ifdef ALLOW_SMOOTH, IF ctrlSmoothCorrel2D, IF useSMOOTH.
314      - ctrl_map_ini_gen.F : replace #ifdef ALLOW_SMOOTH_CORREL3D with
315          #ifdef ALLOW_SMOOTH, IF ctrlSmoothCorrel3D, IF useSMOOTH.
316      - ctrl_set_pack_xy[z].F, ctrl_set_unpack_xy[z].F:
317        replace ALLOW_SMOOTH_CORREL2D/3D brackets with ctrlSmoothCorrel2D/3D.
318    o pkg/smooth:
319      - remove un-necessary includes.
320      - remove ALLOW_SMOOTH*D and ALLOW_SMOOTH_CORREL*D brakets.
321        Those CPP options were never defined, and not necessary.
322    o model/src:
323      - fix CPP brackets in ini_mixing.F (GM_background_K belongs to gmredi).
324      - standard treatment of useSMOOTH.
325    o pkg/autodiff:
326      - add LOGICAL useGGL90inAdMode, useGGL90inFwdMode, useSALT_PLUMEinAdMode,
327        useSALT_PLUMEInFwdMode allowing to switch off ggl90 and salt_plume adjoint.
328    o pkg/exch2:
329      - add "if usingMPI" where it was missing (in exch2_rx?_cube*.template)
330        + start to remove ALWAYS_USE_MPI in source code that TAF does not see.
331      - make new S/R W2_MAP_PROCS out of w2_eeboot.F to setup exch2 CommonFlag
332        and tiles to process mapping.
333      - re-arrange 3 header files (W2_EXCH2_PARAMS.h, _BUFFER.h & _TOPOLOGY.h)
334        moving /EXCH2_FILLVAL_RX/ & /W2_EXCH2_COMMFLAG/ to W2_EXCH2_TOPOLOGY.h;
335        rename "exch2_tProc" to "W2_tileProc" and move seting of e2FillValue_RX
336        from w2_eeboot.F to w2_readparms.F.
337    o eesupp/src:
338      - set exchNeedsMemsync & exchUsesBarrier according to "usingMPI" (instead of
339        ALWAYS_USE_MPI) + moved from ini_communication_patterns.F to eeset_parms.F;
340        also move setting of exchCollectStatistics from exch_init.F to eeset_parms.F
341      - in eedie.F and all_proc_die.F, always call MPI_FINALIZE when ALLOW_USE_MPI
342        is defined (remove condition on usingMPI) to match cases where MPI_INIT
343        has been called.
344      - fix bug I put in previous modif of exch_sm_3d_rx.template (not much used);
345      - change default (non-MPI) value of myPid (from 1 to 0) to match MPI settings
346        (so that on 1 proc, get same myPid independently of usingMPI)
347      - add a stop if multi-procs but usingMPI=F ; stop also if usingMPI=T and
348        useCubedSphereExchange with EXCH-1 (safer).
349      - add "if usingMPI" where it was missing (+ start to remove ALWAYS_USE_MPI).
350    o pkg/ggl90:
351      - fix bug in filling corner mask array "mskCor" (FILL_CS_CORNER_TR_RL call)
352        used in ALLOW_GGL90_SMOOTH code.
353    o pkg/flt:
354      - fix typo in FLT_WITHOUT_Y_PERIODICITY (the effect was to ignore stopping
355        floats at the Southern end of the domain).
356    o eesupp/inc:
357      - add a list of CPP-options which can be set by Makefile (DEF_IN_MAKEFILE.h);
358        but not used (and not to be used) anywhere, just for documentation.
359    o pkg/autodiff, exf, ptracers & seaice (AD & TL output):
360      - comment out the very nasty "writeBinaryPrec = writeStatePrec" line, since:
361        a) can damage previously written records in any other multi-record files.
362        b) if needed, can easily do it cleanly, by calling S/R WRITE_REC_3D_RL/S.
363    o tools/genmake2:
364      - define variable MAKE within Makefile and use it in place of 'make';
365      - update AD_CONFIG.h (if needed) before building any of the executable
366        (forward, adjoint or tangent-lin); this involves a 2nd invocation of make;
367        and add the usual #ifndef/#define AD_CONFIG_H in AD_CONFIG.h;
368      - always print usual warning comment 'this file is automatically generated'
369        from script convert_cpp_cmd2defines (+ remove this warning from genmake2).
370    o pkg/cheapaml:
371      - updated to correspond to the code used in accepted paper (Nico Wienders).
372    o pkg/exf:
373        added run time switch useAtmWind to replace ALLOW_ATM_WIND cpp switch.
374        ALLOW_ATM_WIND now just sets the useAtmWind default (see exf_readparms.F)
375        and force defines ALLOW_BULKFORMULAE (EXF_OPTIONS.h).
376    o pkg/exf, autodiff, ctrl, ecco and seaice:
377        remove ALLOW_ATM_WIND brackets, or replace them with useAtmWind ones.
378    o pkg/ctrl, ecco:
379        allow to compile both ALLOW_U/VSTRESS_CONTROL and ALLOW_U/VWIND_CONTROL.
380        Depending on useAtmWind, one is inactive, and the other is active (see
381        exf_getffields.F/exf_getsurfacefluxes.F).
382    o tools/genmake2:
383      - improve error msg when failing in 2nd test of check_for_broken_Ff
384      - fix option '-makefile' short-name (-mf according to genmake2 -help)
385      - source local config file "genmake_local" just after processing the genmake2
386        command arguments (previously done before processing arg).
387    o pkg/grdchk:
388      - add a call to TURNOFF_MODEL_IO for Tangent-Linear run (in this case, call
389        to this routine from cost_final has been dropped in g_cost_final)
390      - improve printed information (more explicit msg, no longer using "print *,"
391         fix fcpertminus printed value).
392    o model/src:
393      - move call to COST_INIT_VARIA out of packages_init_variables.F directly
394        into initialise_varia.F (just after calling PACKAGES_INIT_VARIABLES):
395        this prevents getting cost-funct reset in adinitialise_varia recomputations.
396    o pkg/dic:
397      - move initialisation of "freefe" array from from dic_biotic_forcing.F to
398        fe_chem.F: this prevents TAF from dropping this initialisation in TLM code.
399    o pkg/grdchk:
400    - grdchk_main.F : added CALL GLOBAL_SUM_INT( ierr , myThid )    - grdchk_main.F : added CALL GLOBAL_SUM_INT( ierr , myThid )
401    - grdchk_getadxx.F etc. : omit I/O if ierr.EQ.0    - grdchk_getadxx.F etc. : omit I/O if ierr.EQ.0
402  o pkg/autodiff/ctrl/grdchk :  o pkg/autodiff/ctrl/grdchk :
403    - attempt to sort out what works and what does not,    - attempt to sort out what works and what does not,
404      with regard to I/O, and to warn/stop accordingly.      with regard to I/O, and to warn/stop accordingly.
405  o pkg/grdchk :  o pkg/grdchk:
406    - attempt to fix grdchk in the case of useSingleCpuIO.    - attempt to fix grdchk in the case of useSingleCpuIO.
407    - "if ( myProcId .EQ. grdchkwhichproc .AND. ierr .EQ. 0 )"    - "if ( myProcId .EQ. grdchkwhichproc .AND. ierr .EQ. 0 )"
408     statements were moved from grdchk_main.F and into     statements were moved from grdchk_main.F and into
409     grdchk_getadxx.F grdchk_getxx.F grdchk_setxx.F.     grdchk_getadxx.F grdchk_getxx.F grdchk_setxx.F.
410    - a global sum is applied to record numbers icvrec/layer    - a global sum is applied to record numbers icvrec/layer
411     out of grdchk_loc so that they be passed to I/O routines.     out of grdchk_loc so that they be passed to I/O routines.
412  o pkg/smooth :  o pkg/smooth:
413    - fix recomputation that appeared with nlfs : use smooth_recip_hFacC,    - fix recomputation that appeared with nlfs : use smooth_recip_hFacC,
414      smooth_hFacW, smooth_hFacS (copied at init_fixed) in 3d case.      smooth_hFacW, smooth_hFacS (copied at init_fixed) in 3d case.
415  o verification/testreport:  o verification/testreport:
416    - add option '-tlm' for Tangent-Linear test (-adm,-oad,-tlm are all exclusive);    - add option '-tlm' for Tangent-Linear test (-adm,-oad,-tlm are all exclusive);
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