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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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o pkg/autodiff, exf, ptracers & seaice (AD & TL output): |
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- comment out the very nasty "writeBinaryPrec = writeStatePrec" line, since: |
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a) can damage previously written records in any other multi-record files. |
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b) if needed, can easily do it cleanly, by calling S/R WRITE_REC_3D_RL/S. |
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o tools/genmake2: |
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- define variable MAKE within Makefile and use it in place of 'make'; |
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- update AD_CONFIG.h (if needed) before building any of the executable |
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(forward, adjoint or tangent-lin); this involves a 2nd invocation of make; |
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and add the usual #ifndef/#define AD_CONFIG_H in AD_CONFIG.h; |
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- always print usual warning comment 'this file is automatically generated' |
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from script convert_cpp_cmd2defines (+ remove this warning from genmake2). |
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o pkg/cheapaml: |
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- updated to correspond to the code used in accepted paper (Nico Wienders). |
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o pkg/exf: |
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added run time switch useAtmWind to replace ALLOW_ATM_WIND cpp switch. |
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ALLOW_ATM_WIND now just sets the useAtmWind default (see exf_readparms.F) |
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and force defines ALLOW_BULKFORMULAE (EXF_OPTIONS.h). |
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o pkg/exf, autodiff, ctrl, ecco and seaice: |
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remove ALLOW_ATM_WIND brackets, or replace them with useAtmWind ones. |
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o pkg/ctrl, ecco: |
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allow to compile both ALLOW_U/VSTRESS_CONTROL and ALLOW_U/VWIND_CONTROL. |
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Depending on useAtmWind, one is inactive, and the other is active (see |
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exf_getffields.F/exf_getsurfacefluxes.F). |
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o tools/genmake2: |
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- improve error msg when failing in 2nd test of check_for_broken_Ff |
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- fix option '-makefile' short-name (-mf according to genmake2 -help) |
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- source local config file "genmake_local" just after processing the genmake2 |
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command arguments (previously done before processing arg). |
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o pkg/grdchk: |
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- add a call to TURNOFF_MODEL_IO for Tangent-Linear run (in this case, call |
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to this routine from cost_final has been dropped in g_cost_final) |
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- improve printed information (more explicit msg, no longer using "print *," |
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fix fcpertminus printed value). |
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o model/src: |
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- move call to COST_INIT_VARIA out of packages_init_variables.F directly |
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into initialise_varia.F (just after calling PACKAGES_INIT_VARIABLES): |
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this prevents getting cost-funct reset in adinitialise_varia recomputations. |
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o pkg/dic: |
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- move initialisation of "freefe" array from from dic_biotic_forcing.F to |
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fe_chem.F: this prevents TAF from dropping this initialisation in TLM code. |
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o pkg/grdchk: |
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- grdchk_main.F : added CALL GLOBAL_SUM_INT( ierr , myThid ) |
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- grdchk_getadxx.F etc. : omit I/O if ierr.EQ.0 |
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o pkg/autodiff/ctrl/grdchk : |
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- attempt to sort out what works and what does not, |
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with regard to I/O, and to warn/stop accordingly. |
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o pkg/grdchk: |
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- attempt to fix grdchk in the case of useSingleCpuIO. |
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- "if ( myProcId .EQ. grdchkwhichproc .AND. ierr .EQ. 0 )" |
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statements were moved from grdchk_main.F and into |
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grdchk_getadxx.F grdchk_getxx.F grdchk_setxx.F. |
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- a global sum is applied to record numbers icvrec/layer |
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out of grdchk_loc so that they be passed to I/O routines. |
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o pkg/smooth: |
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- fix recomputation that appeared with nlfs : use smooth_recip_hFacC, |
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smooth_hFacW, smooth_hFacS (copied at init_fixed) in 3d case. |
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o verification/testreport: |
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- add option '-tlm' for Tangent-Linear test (-adm,-oad,-tlm are all exclusive); |
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- can also use compressed (gzip) reference output file; |
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- change format (in pkg/grdchk) of TLM output (+ add forward gradient) |
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to be easier to collect by testreport. |
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- update existing TLM output (half out-of-date by more than 3 yrs). |
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- report NETCDF & LAPACK settings (from genmake2) in output dir. |
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- report run-time in each individual summary (previously only for AD test); |
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for TLM test, add also TAF version. |
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- add daily TLM test on (old) aces cluster + weekly test on baudelaire. |
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checkpoint63r (2012/08/15) |
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o tools/genmake2: |
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- fix Makefile for target ftlall (+ update files to clean after make ftlall) |
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o pkg/ecco/ecco_cost_final.F : |
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- fix fc print statements (to stdout and costfunction0000) so |
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that the printed value is always after the global sum. |
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o pkg/seaice/seaice_dynsolver.F : |
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- fix ice strength assymptote at SEAICE_area_max<1 |
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(no change for the standard case of SEAICE_area_max=1) |
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o some cleaning: |
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- pkg source files: ensure that all *.F files from each pkg included the |
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corresponding ${PKG}_OPTIONS.h file (except stand-alone src file which |
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only includes CPP_EEOPTIONS.h); fix S/R CTRL_SMOOTH ; update AD experiment |
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code_ad/*.F src files; add new option-file in pkg/admtlm + corresponding |
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includes; |
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- model/src: add PACKAGES_CONFIG.h wherever ALLOW_AUTODIFF[_TAMC] is used. |
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- ALLOW_DIFFKR_CONTROL: add a stop in S/R CTRL_CHECK in case ALLOW_3D_DIFFKR |
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is undef; also define /DYNVARS_DIFFKR/ common block in DYNVARS.h when |
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ALLOW_DIFFKR_CONTROL is defined, to allow to compile and reach this stop. |
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- update option-file CPP_OPTIONS.h of all AD experiments: |
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* no longer include PACKAGES_CONFIG.h ; |
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* includes ECCO_CPPOPTIONS.h if PACKAGES_CONFIG.h has been included ; |
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* def/undef ALLOW_3D_DIFFKR independently of ALLOW_DIFFKR_CONTROL (before |
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including ECCO_CPPOPTIONS.h). |
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o pkg/cost, pkg/ctrl, pkg/ecco option-file: |
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- clean-up and split content of old pkg/ecco/ECCO_CPPOPTIONS.h file into |
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separated pkg option-file (done according to old doc from ECCO_CPPOPTIONS.h, |
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not necessary accurate). |
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- add a template for option-file ECCO_CPPOPTIONS.h, mostly empty, in |
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pkg/autodiff, i.e., the 1rst pkg to compile for adjoint built, with lines to |
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deliberately break compilation (a remainder that it needs to be customized) |
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- in pkg/ecco, includes ECCO_OPTIONS.h instead of COST_OPTIONS.h |
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- rename COST_CPPOPTIONS.h to COST_OPTIONS.h |
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- rename CTRL_CPPOPTIONS.h to CTRL_OPTIONS.h |
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o tools/genamke2: |
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- check for lapack. |
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o pkg/cost and pkg/ecco : attempt to sort out some of the limiting intricacies. |
o pkg/cost and pkg/ecco : attempt to sort out some of the limiting intricacies. |
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- pkg/cost.cost_final.F : allow for use of pkg/ecco and pkg/cost cost functions jointly. |
- pkg/cost.cost_final.F : allow for use of pkg/ecco and pkg/cost cost functions |
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The exclusive ifdefs were removed, to add costs terms (when defined) from both packages. |
jointly. The exclusive ifdefs were removed, to add costs terms (when defined) |
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from both packages. |
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- the fc global sum in pkg/ecco/ecco_cost_final.F was removed accordingly. |
- the fc global sum in pkg/ecco/ecco_cost_final.F was removed accordingly. |
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- for objf_atl we use either the pkg/ecco or the pkg/cost term depending on CPPs. |
- for objf_atl we use either the pkg/ecco or the pkg/cost term depending on CPPs. |
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- pkg/ecco and model/src : add CPP brackets around pkg/cost and pkg/ctrl includes of |
- pkg/ecco and model/src : add CPP brackets around pkg/cost and pkg/ctrl includes |
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"CTRL_SIZE.h" "ctrl.h" "ctrl_dummy.h" "optim.h" / "cost.h" accordingly. |
of "CTRL_SIZE.h" "ctrl.h" "ctrl_dummy.h" "optim.h" / "cost.h" accordingly. |
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o pkg/cost : add comments to explain special and/or untested setups. |
o pkg/cost : add comments to explain special and/or untested setups. |
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o pkg/exf: |
o pkg/exf: |
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- use EXF_OPTIONS.h to set pkg/exf options except if done in ECCO_CPPOPTIONS.h |
- use EXF_OPTIONS.h to set pkg/exf options except if done in ECCO_CPPOPTIONS.h |
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