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revision 1.1683 by gforget, Fri Jul 6 06:27:17 2012 UTC revision 1.1705 by gforget, Mon Aug 6 14:24:24 2012 UTC
# Line 4  $Name$ Line 4  $Name$
4      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
5      ==============================      ==============================
6    
7    o model/src: move balancing of relaxation terms to new S/R balance_relax.F.
8    o pkg/autodiff:
9      re-write active I/O high-level (control) S/R:
10      - rename  S/R ACTIVE_READ/WRITE_RL to ACTIVE_READ/WRITE_3D_RL
11      - add 1 more argument (useCurrentDir) to replace the "_LOC" 2nd set of S/R.
12      - use standard pkg/mdsio I/O routines (MDS_READ/WRITE_SEC_XZ/YZ  and
13        MDS_READ/WRITE_FIELD); change loops to multi-threads.
14      - update and merge active_file_control_slice.flow into active_file_control.flow
15      - update the calls in lower level S/R (active_file.F, active_file_g.F and
16        active_file_ad.F) keeping the argument list and function unchanged.
17      - also update lower-level "_LOC" version (call same S/R with "useCurrentDir
18        =.TRUE.") and remove high-level (control) _loc version (not called anymore).
19      - new low-level active I/O routines, one for each type (RL/RS), for active var
20        of various (XY,XZ,YZ) shape and level number (arguments: arrShape, myNr);
21        fix ctrl_init_wet.F & ecco_cost_weights.F by calling the new S/R with the
22        right type.
23    o autodiff and RS=real*4:
24      - call the right type (_RS instead of _RL) of S/R in few output S/R (pkg/exf
25        ad-monitor and snapshots); disable arrType='RS' in mdsio_gl*.F ;
26      - change argument type of 3-D mask argument to _RS to match type in the call
27        (in seaice_cost*.F, ctrl_*_gen.F and *ctrl_bound.F); to be continued.
28    o pkg/thsice:
29      - re-anable balanceEmPmR when useSEAICE=T with useThSIce=T.
30      - option to correct ocean fresh-water flux for imbalance of Atmos+Land
31        fresh-water flux: uniform correction or proportional to local precip.
32    o pkg/ctrl:
33      - new header file CTRL_SIZE.h for parameters maxCtrlArr2D, maxCtrlArr3D
34      - redefine CPP option ALLOW_BOTTOMDRAG_CONTROL to
35                            ALLOW_BOTTOMDRAG_CONTROL_NONGENERIC
36      - verification/hs94.1x64x5/ tests ALLOW_GENARR{2D,3D}_CONTROL
37    
38    checkpoint63q (2012/07/30)
39    o pkg/autodiff:
40      note about monitor and snap-shot of ad-variables:
41      a) need to apply ADEXCH before monitor or output of ad-vars to include
42       overlap contributions (was done for adjDump but missing for monitor).
43      b) since ADEXCH implies adding overlap values to interior array, machine
44       truncation error is expected when adding an ADEXCH call in the middle of
45       the time-stepping (although mathematically identical).
46      modifs:
47      - fix some incorrect type (RL/RS, UV/scalar) in ADEXCH calls and ad-vars
48        declaration (adEddyPsiX,adEddyPsiY in adcommon.h).
49      - add new run-time params (dumpAdVarExch & mon_AdVarExch) to select how  to
50        apply ADEXCH before monitor or snap-shot of ad-variables:
51           =0 : no ADEXCH ; =1 : do ADEXCH ; =2 : apply ADEXCH on a local copy.
52      - implement new method (copy+adexch) for snap-shot and monitor of main model
53        ad-vars (initially not used by default -> output unchanged).
54      - change default (set to 2) to use new method and update few output_adm.txt
55        with accurate ad-monitor (global_ocean.90x40x15, tutorial_global_oce_biogeo
56        and both tutorial_tracer_adjsens tests).
57      - switch 2 global_ocean.cs32x15 AD-tests to AB-2 (seaice_dynmix & thsice)
58        and turn off momDissip_In_AB in the 2 other (needed for stable AB-3).
59    o pkg/ctrl:
60      enable the use of a variable number (maxCtrlArr2D, maxCtrlArr3D) of
61      generic control variables via
62      #define ALLOW_GENARR2D_CONTROL and/or #define ALLOW_GENARR3D_CONTROL
63      Only required customization should be S/R ctrl_map_ini_genarr.F
64      (routine in repository contains example)
65    o pkg/exf:
66      - fix and refine checking of surface-relaxation setting when using EXF
67    o verification (adjoint exp):
68      - reduce length of simulation by half for experiment global_ocean.cs32x15
69        (std, seaice & seaice_dynmix) and exp tutorial_dic_adjoffline; update output.
70    o pkg/mom_common (mom_u/v_bottomdrag), pkg/shelfice (shelfice_u/v_drag)
71      - replace if statements KE.ne.0 with KE.gt.0 to avoid sqrt of negative numbers
72        of KE that can occur with aggressive optimization
73      + put quadratic bottom drag calculation in separated loops (only done if
74        using bottomDragQuadratic)
75    o model/src: CG2D_NSA
76      - clean-up:  stop if cg2dNormaliseRHS=T and AUTODIFF
77         and replace GLOBAL_SUM calls with GLOBAL_SUM_TILE.
78      - in test-exp that uses CG2D_NSA (bottom_ctrl & tutorial_tracer_adjsens),
79         change cg2d residual target to be expressed in Wunits (=> do not normalise
80         RHS ; this fix global_max Pb with TAF); update output.
81    o verification/tutorial_tracer_adjsens:
82       improve parameter consistency (and get rid of warnings):
83       - use deltaTFreeSurf=deltaTtracer (better with NonLin FreeSurf);
84       - switch Temp Adv Scheme from 81 to 80 (no limiter since theta < 0 is physical)
85       - use staggerTimeStep (for stability) in som81; use default rotation period.
86    o pkg/exch2:
87      - with empty facet: fix compact-format (W2_mapIO=1) definition (was previously
88        reset to 0 = 1 long line in X)
89    o pkg/mdsio:
90      - fix reading of dimensions from meta file for large-size domain
91    o model/src:
92      - fix saltIsActiveTr setting for IdealGas eosType (eosType is 6 character long);
93      - to refine CS-grid check, add logical flag "hasWetCSCorners": true if using
94        Cubed-Sphere Exch with CS-corners inside the domain;
95        make new S/R INI_GLOBAL_DOMAIN from code in ini_linear_phisurf.F to calculate
96        globalArea and to set hasWetCSCorners.
97      - add warning if usingCurvilinearGrid and momAdvection in flux-form (missing
98        metric terms); stop if hasWetCSCorners=T and momAdvection in flux-form.
99      - re-activate the stop if useCDscheme and hasWetCSCorners=T (previously if
100        useCDscheme and useCubedSphereExchange).
101    o pkg/seaice/seaice_growth.F :
102      - compute the SEAICE_DISABLE_HEATCONSFIX term accordingly
103        for the (.NOT.useRealFreshWaterFlux).OR.(nonlinFreeSurf.EQ.0)
104        when the previous code was not correct.
105      - in all cases diagnoze the boundary condition mismatch to SIaaflux
106      - in the case of useRealFreshWaterFlux.AND.(nonlinFreeSurf.GT.0) add
107        that term to QNET (essentially to set the melt/freeze water to 0degC).
108        when SEAICEheatConsFix is true, so that the ocean+ice budget heat is closed.
109    o verification/global_ocean.cs32x15/input.seaice :
110      - add SEAICEheatConsFix in data.seaice, ensuring closed ocean+ice heat budget.
111      - add diagnostics (commented out) for budget test using my matlab codes (gcmfaces).
112      - update results (output.seaice.txt) accordingly.
113    o verification/lab_sea/input/data.seaice :
114      - remove SEAICEheatConsFix, which is now be tested
115        in global_ocean.cs32x15. The presently coded fix
116        is only consistent with real fresh water + nlfs.
117      - update results (output.txt) accordingly.
118    o pkg/salt_plume: added diagnotic for salt tendency (oceSPtnd).
119    o AD_CONFIG.h file:
120      - in genmake2: remove "#undef ALLOW_ECCO_OPTIMIZATION" from AD_CONFIG.h;
121      - remove #include "AD_CONFIG.h" from all included OPTIONS files and
122        add it explicitly in each fortran src file where it is needed.
123        motivation: header file AD_CONFIG.h is generated/modified after "make depend"
124        thus introducing potentially wrong dependency; therefore, better to include
125        it only where it's really needed, and after any other included OPTIONS file
126        (less tempting to bring conditional includes according to ALLOW_ADJOINT_RUN
127        or ALLOW_TANGENTLINEAR_RUN).
128    
129    checkpoint63p (2012/07/06)
130  o pkg/autodiff:  o pkg/autodiff:
131    - rename S/R INI_AUTODIFF to AUTODIFF_INIT_VARIA ;    - rename S/R INI_AUTODIFF to AUTODIFF_INIT_VARIA ;
132    - create new header file "AUTODIFF_PARAMS.h" for pkg/autodiff parameters    - create new header file "AUTODIFF_PARAMS.h" for pkg/autodiff parameters
# Line 24  o model/src: Line 147  o model/src:
147    - introduce ALLOW_BALANCE_RELAX which allow the removal    - introduce ALLOW_BALANCE_RELAX which allow the removal
148     of the global mean of relaxation terms by setting     of the global mean of relaxation terms by setting
149     balanceThetaClimRelax and balanceSaltClimRelax     balanceThetaClimRelax and balanceSaltClimRelax
150    - disable balanceEmPmR and balanceQnet in the case when useSeaice.    - disable balanceEmPmR and balanceQnet in the case when useSeaice.
151     This case is now treated appropriately in seaice_growth.F     This case is now treated appropriately in seaice_growth.F
152  o pkg/seaice:  o pkg/seaice:
153  - do balanceEmPmR and balanceQnet based on the net fluxes    - do balanceEmPmR and balanceQnet based on the net fluxes
154    (SItflux) that enter the ocean+ice system rather than QNET      (SItflux) that enter the ocean+ice system rather than QNET
155    and EMPMR. Works best in real fresh water.      and EMPMR. Works best in real fresh water.
156  - SIatmFW, SIatmQnet, and SItflux computations had to be moved    - SIatmFW, SIatmQnet, and SItflux computations had to be moved
157    out of the diagnotics bloc, and stored in global arrays.      out of the diagnotics bloc, and stored in global arrays.
158    
159  checkpoint63o (2012/06/29)  checkpoint63o (2012/06/29)
160  o vertical mixing schemes:  o vertical mixing schemes:
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