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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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o array initialisation in adjoint mode: |
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1) pkg/mom_common/mom_calc_ke.F: |
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add full array initialisation of KE inside mom_calc_ke.F (ALLOW_AUTODIFF_TAMC): |
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The S/R which calls MOM_CALC_KE initialises KE but in some recomputation |
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part this initialisation is gone, resulting in Floating Point Exception |
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(caught by open64 compiler with debug option). |
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2) model/src/convective_weights.F |
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set output convectCount over the full array range (instead of doing |
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an update): this fix a similar issue when called within recomputation (adjoint) |
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which could by-pass the initialisation (normally done in the caller S/R). |
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o pkg/seaice: |
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- final version of turbulent flux params, as agreed at MIT ice meet: |
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SEAICE_mcPheePiston (default is ~ 0.000875) |
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SEAICE_mcPheeTaper (default is 0.) |
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SEAICE_frazilFrac (defualt is 1.) |
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SEAICE_mcPheeStepFunc (default is false) |
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- changes results at trunction error level |
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- ifdef SEAICE_EXTERNAL_FLUXES, disallow SEAICE_waterAlbedo |
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o added pkg/frazil: |
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- see frazil_description.tex for details |
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- verification experiment is global_with_exf/input.yearly; changes output.yearly.txt |
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o pkg/shelfice/shelfice_thermodynamics.F |
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- fix exponents for velocity dependent exchange coefficients: change |
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from 2/3(=0) to 0.66666666666666667 |
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- move computation of velocity dependent exchange coefficients into |
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separate loop, so that it applies to both thermodynamics |
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- move some divisions by constants out of loops |
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checkpoint63j (2012/02/16) |
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o pkg/seaice: |
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- overhaul of seaice_summary.F after feb 2012 clean-up of seaice_growth.F etc. |
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- SItracer: added run time params, and allow coupling to ocn salinity. |
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o pkg/seaice: remove (almost) all divisions by constants within loops |
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in seaice_growth.F and seaice_solve4temp.F, this changes (only) the cg2d |
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results of global_ocean.cs32x15.seaice from 16 to 11 digits (but only |
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those, caused by 1/QI -> recip_QI) -> update output.seaice.txt, |
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output_adm.seaice_dynmix.txt and also lab_sea: output_adm.evp.txt |
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o pkg/seaice : |
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- simplify McPhee tapering, and allow to use it with SEAICEturbFluxFormula |
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= 1 or 2, using newly added run time parameter SEAICE_availHeatTaper. |
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- fix d_AREAbyATM, d_AREAbyOCN, d_AREAbyICE diags I broke in r1.148. |
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- add permanent SItflux diag that corresponds to TFLUX but includes |
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ice+snow. Hence SItflux-TFLUX should match the ice+snow heat budget. |
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- allow activation/testing of a fix for suspected missing term in |
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ocn-ice heat budget (to be confirmed). To test this, you want to |
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undef SEAICE_DISABLE_HEATCONSFIX, and then set the run time param |
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SEAICEheatConsFix to .TRUE. that also allows the 'SIaaflux' diagnostic. |
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- no change in results, fwd or ad. |
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o global_ocean.cs32x15/results: 3 changes following from the pkg/seaice commit below: |
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- switch to variable freezing point. |
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Results change : cg2d -> 1 digits; ad -> 3-6-6 digits. |
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- bug fix : the sublimation term that was missing is now activated. |
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Results change : cg2d -> 2 digits; ad -> 8-6-6 digits. |
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- bug fix : flooding sign term for SIsal0.NE.0. |
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Result change : cg2d -> 8 digits; ad -> 11-12-9 digits. |
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o pkg/seaice: |
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- unified freezing point treatment : the old SEAICE_VARIABLE_FREEZING_POINT |
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is now the default, and the old default constant freezing point is recovered |
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with SEAICE_tempFrz0 = -1.96, |
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SEAICE_dTempFrz_dS = 0., |
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- retire SEAICE_freeze (= the old way of specifycing the constant freezing point) |
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- remove ALLOW_SEAICE_FLOODING brackets; run time switch is already there. |
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- bug fix (thanks to M. Losch) : the sublimation term that was missing is now |
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activated. To reproduce old results with this bug define SEAICE_DISABLE_SUBLIM. |
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- bug fix (silly me) : flooding sign term (seaice_growth.F r 1.149line 1211) |
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was wrong for SIsal0.NE.0. Changes cs32x15 results (see above item for detail). |
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- bug fix (thanks to O. Jahn) : area loss for melting got messed up in |
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seaice_growth r149 for legacy branch (no results change). |
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- introduce SEAICE_CAP_SUBLIM : caps sublimation heat flux in solve4temp (code |
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from I. Fenty). |
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- results did not change except for global_ocean.cs32x15, mostly due to the |
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switch to variable freezing point (see above item for detail). |
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o pkg/thsice: |
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- fix and simplify interface to salt_plume pkg ; diagnose directly amount of |
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seawater freezing in thsice_calc_thickn (not used). |
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o pkg/seaice: turbulent flux term specification via run time params. |
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- replace CPP switches with run time switches to facilitate testing |
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- retired CPPs : MCPHEE_OCEAN_ICE_HEAT_FLUX, |
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GRADIENT_MIXED_LAYER_TURBULENCE_FACTOR |
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- added runtime parameter : SEAICEturbFluxFormula |
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- move Mcphee constants to SEAICE_PARAMS.h |
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- seaice_readparms.F : read turbulent flux term params (SEAICEturbFluxFormula; |
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SEAICE_availHeatFrac/Frz, or SEAICE_gamma_t/_frz if apply); |
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remove seaice_summary call (moved to seaice_init_fixed) |
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- seaice_init_fixed.F : set SEAICE_availHeatFrac/Frz depending on |
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SEAICEturbFluxFormula, and seaice_summary call (moved from seaice_readparms) |
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- seaice_summary.F : add missing report of read turbulent flux term set up |
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and SITRACER. |
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- seaice_check.F : check range; inform and stop if retired CPPs are used |
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(incl. SEAICE_AGE). |
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- seaice_growth.F : unified use of SEAICE_availHeatFrac/Frz, without |
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CPP switch, same computation as before for the different options. |
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- change results at the truncation level. |
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o pkg/seaice: |
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- remove un-used parameters LAD & MAX_TICE ; add new run-time parameters: |
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useMaykutSatVapPoly (default=F), postSolvTempIter (default=2) and |
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SEAICE_wetAlbTemp (default=-1e-3). Remove option SEAICE_SOLVE4TEMP_LEGACY. |
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- update verification/*/input*/data.seaice: |
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to reproduce previous results with former #defined SEAICE_SOLVE4TEMP_LEGACY |
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code, set useMaykutSatVapPoly=T & postSolvTempIter=0 ; |
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and to reproduce previous results with former non-SOLVE4TEMP_LEGACY code, |
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set SEAICE_wetAlbTemp=0 & SEAICE_snowThick=0. |
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o pkg/seaice/seaice_solve4temp.F (SOLVE4TEMP_LEGACY): |
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- remove LEGACY code for solving for tsurf (A1,A2,A3) but maintain the same |
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algorithm (same choice: useMaykutPolySatVap=T, postSolvTempIter=0); |
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difference in results only due to machine truncation. |
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- remove MAX_TICE (tsurf is always =< TMELT anyway); keep MIN_TICE if using |
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MaykutPolySatVap; keep MIN_LWDOWN. |
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- adapt SEAICE_MODIFY_GROWTH_ADJ code (untested) to non-legacy formulation. |
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- update output of verification exp. lab_sea (4 fwd: 11 cg2d digits except hb87, |
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+ 3 AD: 6 digits except evp) and offline_exf_seaice.seaice (12 digits). |
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o pkg/salt_plume: |
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- isolate saltPlumeFlux array exch into a specific S/R called from |
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do_oceanic_phys.F |
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- add interface to pkg/salt_plume (filling of saltPlumeFlux) in pkg/thsice. |
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o verification: |
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- move untested set-up to MITgcm_contrib/verification_other. |
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o pkg/seaice: |
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- retire old way of SEAICE_AGE. Now replaced with ALLOW_SITRACER. |
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o pkg/seaice: |
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- seaice_solve4temp.F (keeping results unchanged): |
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* add 2 future run-time params to select which saturation vapor pressure |
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formula is used and how post-iteration fluxes are set. |
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Temporary set these 2 params according to option SOLVE4TEMP_LEGACY; |
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* New piece of code (not used) to update surf. atmos. heat flux F_ia using |
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the linearized expression to stay consistent with tsurf finding. |
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- seaice_freedrift.F avoid floating exception in sqrt(y) since y=sqrt(x*x)-x |
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can be < 0. |
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o pkg/seaice/seaice_solve4temp.F (SOLVE4TEMP_LEGACY undef): |
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- remove from F_ia (and from it's derivative dFiDTs1) the contribution of |
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conductive heat flux F_c , and add it explicitly when updating tsurf as |
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solution of: Fc = Fia + d/dT(Fia - Fc) *delta.tsurf |
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so that now F_ia has a consistent meaning through the entire routine. |
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This causes differences at truncation level: update output of fwd exp. |
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global_ocean.cs32x15.seaice. |
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o pkg/seaice: |
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- lots of editing/cleaning in seaice_solve4temp.F + better documentation |
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of arrays, sign/direction of fluxes; no effect on results. |
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- replace hard coded 273.16 (=previous value of celsius2K) by celsius2K |
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in seaice_budget_ocean.F & seaice_solve4temp.F (SOLVE4TEMP_LEGACY part); |
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note: this should have been done before changing celsius2K default. |
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- to keep results unchanged, add back old value of celsius2K in verification |
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exp. input*/data : lab_sea (AD), offline_exf_seaice (fwd+AD) & seaice_obcs |
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- replace hard coded seawater freezing temp in seaice_solve4temp.F (part |
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SOLVE4TEMP_LEGACY) of 271.20 (=previous value of celsius2K + default |
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value of SEAICE_freeze) by celsius2K+SEAICE_freeze so that seawater |
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freezing temp is consistent with value in seaice_growth.F ; this causes |
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differences at machine truncation level: update lab_sea AD output (3/4). |
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o pkg/seaice: |
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- mask (in exf_init_fixed.F) atemp,aqh,evap,precip,runoff,lwflx,areamask |
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and climsst/sss even when using seaice (to prevent calculation that might |
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use SST on land); does not affect any verification exp. |
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- apply mask to taux,tauy (in seaice_get_dynforcing.F); update output |
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of lab_sea.fd & lab_sea.hb87 and global_ocean.cs32x15.seaice_dynmix. |
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o pkg/seaice/seaice_growth.F: add mask to avoid non-zero ice thickness |
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over land (non-legacy code) |
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o vectorize salt_plume package: |
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- add extra code to salt_plume_frac and salt_plume_tendency_apply_s |
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- this code computes plumebk everywhere (also over land), thus requires |
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code to avoid divisions by zero and catch the case of kLev=Nr. |
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- efficiency of salt_plume_frac is still sub-optimal |
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o tools (genmake2): |
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- fix makefile NAME specification (option: -makefile NAME) by adding |
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"-f $MAKEFILE" in few places where it was missing including makedepend |
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command (contribution from Paul). |
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|
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checkpoint63i (2012/01/24) |
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o model/src: |
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- add factorized versions of some EOS code to find_rho.F, |
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define USE_FACTORIZED_EOS to turn it on (default for TARGET_NEC_SX) |
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o model/src: |
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- add celsius2K to namelist PARM01; remove unused recip_rhoNil from PARAMS.h; |
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- change default celsius2K from 273.16 to 273.15 |
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- to keep results unchanged, add back old value of celsius2K in verification |
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exp. input*/data : aim.5l_cs, 1D_ocean_ice_column, lab_sea (fwd), |
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global_ocean.cs32x15(seaice) & cpl_aim+ocn(input_atm). |
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o model/src: add a little initialisation trick to find_rho.F and find_alpha.F |
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to make TAF generate vectorizable code |
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o pkg/seaice/seaice_evp.F: add code (copied from CICE) that avoids underflows. |
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Turn on by defining SEAICE_EVP_ELIMINATE_UNDERFLOWS. Most compilers |
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have flags that do this more efficiently. |
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o pkg/diagnostics/diagstats_calc.F |
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- for TARGET_NEC_SX fix the treatment of the scaling factor tmpFac=scaleFact |
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o pkg/obcs (with exch2): |
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- derive OB indices in overlap region from OB-InsideMask (in obcs_init_fixed.F) |
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and remove code (in obcs_readparms.F) which was based on EXCH of indices |
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(through buffer) and did not account for exch2 (e.g., CS-grid) topology. |
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o pkg/exf and seaice exp: |
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- change offline_exf_seaice.seaicetd test exp. to use default DIFF1 value (=0) |
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so that switching off area & heff advection flags does not affect results. |
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- change default EXF_LWDOWN_WITH_EMISSIVITY to #define in EXF_OPTIONS.h |
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- keep exp. seaice_obcs & 1D_ocean_ice_column(ad) unchanged (using #undef |
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EXF_LWDOWN_WITH_EMISSIVITY) and, using pkg/exf default emissivities, update |
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results of verification experiments: 1D_ocean_ice_column(fwd), |
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global_ocean.cs32x15.seaice(fwd+ad) & seaice_dynmix(ad), lab_sea (all 8) |
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and offline_exf_seaice (all 4). |
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o pkg/seaice: |
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- remove array YNEG, RIVER, TMIX (replaced by local var) from common block; |
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remove also areaNm1 & hEffNm1 when SEAICE_GROWTH_LEGACY is undef. |
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- fix bug: areaNm1 & hEffNm1 are needed in seaice_growth (SEAICE_GROWTH_LEGACY) |
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but were not filled when resp. SEAICEadvArea=F & SEAICEadvHeff=F and |
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not multi-dim advection; |
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- fix seaice_growth.F to compile with both SEAICE_GROWTH_LEGACY and |
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SHORTWAVE_HEATING #undef. |
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o optim: make Makefile more robust (?) |
o optim: make Makefile more robust (?) |
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o pkg/obcs: |
o pkg/obcs: |
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* fix treatment of obcs_read_pickup for TAF |
* fix treatment of obcs_read_pickup for TAF |
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o pkg/shelfice: |
o pkg/shelfice: |
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* add missing initialisation of num_shifwflx |
* add missing initialisation of num_shifwflx |
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* new adjoint verification exp. for isomip |
* new adjoint verification exp. for isomip |
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* change Prandtl and Schmidt numbers from generic formulations |
* change Prandtl and Schmidt numbers from generic formulations |
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(in terms of model diffus. and visc.) to separate runtime |
(in terms of model diffus. and visc.) to separate runtime |
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parameters, with Holland and Jenkins (1999) default values. |
parameters, with Holland and Jenkins (1999) default values. |
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o pkg/exf (interpolation): |
o pkg/exf (interpolation): |
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- extended input field (2 rows) near the N & S poles: |
- extended input field (2 rows) near the N & S poles: |
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