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revision 1.1476 by mlosch, Tue Jul 19 12:54:25 2011 UTC revision 1.1498 by jmc, Mon Aug 29 19:46:22 2011 UTC
# Line 4  $Name$ Line 4  $Name$
4      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
5      ==============================      ==============================
6    
7    o pkg/ebm:
8      - fix multi-threading in ebm_area_t.F ; clean-up EBM.h header file.
9      - add multi-threaded test for verification exp. global_ocean_ebm
10    
11    checkpoint63b (2011/08/29)
12    o pkg/ebm:
13      - fix sign of runoff;
14      - update directly forcing fields (Qnet,EmPmR) to use standard
15        external_forcing_surf.F (remove ebm_forcing_surf.F);
16      - avoid loading forcing fields a 2nd time (1rst time from ini_forcing.F);
17      - set either tauThetaClimRelax (in data) or tauThetaZonRelax (in data.ebm)
18        and apply relaxation towards corresponding SST field (2-D map or ZonAver).
19      - update global_ocean_ebm parameters file data and update output (fwd+ad).
20    o verification/matrix_example:
21      - split domain in 8 tiles (2x4); add SIZE.h_mpi and eedata.mth for
22        MPI and mutlti-threaded testing.
23    o pkg/matrix:
24      - change name of S/R MATRIX_INIT to S/R MATRIX_INIT_VARIA ;
25      - fix for multi-tiles (add bi,bj indices to exp/impMatrixCounter);
26      - fix for multi-threaded (remove DATA statement);
27      - use standard DIFFERENT_MULTIPLE function;
28      - add MATRIX_OPTIONS.h
29    o verification/matrix_example:
30       To allow to split the domain in several tiles, change the domain size
31        from 31x31 to 32x32 by adding 1 row (on Southern side) + 1 column (on
32        Western side) of land points.
33    o (*_)write_pickup:
34      - fix few bugs in mypackage_read/write_pickup.F
35      - in MDS_WR_METAFILES calls, replace "myTime" by a local copy into
36        array of length 1 (was caught by compiler syntax-check).
37    o pkg/diagnostics (velocity potential solver):
38      - fix initialisation of main diagonal matrix (for overlap values)
39    o tools/build_options:
40      - towards single optfile for MPI and non-MPI built: merge few +mpi optfile
41        into previously non MPI one (linux_am64 pgf77,open64,pathf90,ifort11)
42      - linux_amd64_gfortran: merge +mpi_generic version into standard optfile:
43        * move IEEE flags to DEVEL section; take IEEE flags from +mpi_generic ;
44        * FAST case: for now, keep -O3 with ini_masks_etc.F in NOOPTFILES list;
45        and use "-devel" testreport option for standard testing on baudelaire.
46    o pkg/grdchk:
47      - Assume that all gradient-check position are within the same tile
48        corresponding to global indices (iGloTile,jGloTile) and that
49        positions (i,j indices or nbeg) are local to this tile;
50      - set tile local-indices and proc. number according to tile global-indices;
51      - remove grdchkwhichproc from namelist (retired param);
52      - send adjoint gradient to all procs so that all procs print it to STDOUT;
53      - switch on MPI test for global_ocean.90x40x15 AD test experiment.
54    o adding package bbl (Bottom Boundary Layer)
55      description in MITgcm/pkg/bbl/bbl_description.tex
56      example/test experiment in MITgcm_contrib/bbl
57    o adjoint verifications
58      - changed 5 experiments to multi-tiles
59        * global_ocean.90x40x15
60        * obcs_ctrl
61        * offline_exf_seaice
62        * tutorial_dic_adjoffline
63        * tutorial_tracer_adjsens
64        changed reference output for those that crossed tile boundaries
65        (changed choices of gradient check positions)
66      - with same tiling, switch on MPI test for the last 4 (add SIZE.h_mpi)
67      - temporary bug fix in grdchk_loc.F for obcs
68    o genmake2 & testreport
69      - add target "obj" (just for OBJFILES files) to Makefile;
70      - add option to specify FEXTRAFLAGS on command line.
71    o pkg/mypackage:
72      - remove bi,bj arguments from argument list of S/R MYPACKAGE_CALC_RHS
73    
74    checkpoint63a (2011/08/02)
75    o pkg/diagnostics (velocity potential):
76      - fix velocity-potential calculation when using OBCS: balance net inflow
77        at each level (new S/R OBCS_DIAG_BALANCE).
78      - fix some of the problems with OBCS in stream-function calculation.
79    o pkg/exf/exf_readparms.F
80      - make treatment of optional namelists (EXF_NML_04, EXF_NML_SGRUNOFF,
81        EXF_NML_OBCS) more consistent, so that you need not have these lists
82        in data.exf when they are not used.
83    o optim/optim_readdata.F:
84      - add some output about obcs variables that might help debugging
85      - add a check about nvarlength
86    o pkg/ctrl: once again, fix computation of endrec in s/r ctrl_init_rec
87    o pkg/diagnostics (velocity potential):
88      - fix mask for OBCS (still problems in stream-function with OBCS);
89      - add specific parameter (default = main code CG2D params) for solver;
90      - in case of poor convergence, use solution corresponding to lowest residual.
91    o pkg/seaice/seaice_growth.F: small changes that permit vectorizable
92      adjoint code. In general statements like tmpscal=fld(i,j) are problematic
93      and should be avoided where possible.
94    o model/src (rStar):
95      - include r* effect on reference-state (PhiRef) in totPhiHyd
96        (so that it's really the potential anomaly at the cell center);
97        affect solution only if z* with full pressure in EOS.
98      - test-exp global_ocean.90x40x15: reduce viscA4 (was not stable) and
99        update output (because of z* in totPhiHyd and viscA4 changes);
100      - keep the previous diagnostics as "PHIHYDcR" (closer to potential anomaly
101        @ constant r) until interpolation at constant r is implemented.
102    o pkg/diagnostics
103      - fix RCENTER diagnostics in case cell center is not at interface middle
104  o add code for TEOS-10 (www.teos-10.org, McDougall et al. 2011). Use  o add code for TEOS-10 (www.teos-10.org, McDougall et al. 2011). Use
105    this eos with eosType = 'TEOS10', in data (PARM01). This eos implies    this eos with eosType = 'TEOS10', in data (PARM01). This eos implies
106    that THETA and SALT are "conservative temperature" and "absolute    that THETA and SALT are "conservative temperature" and "absolute
# Line 16  o pkg/seaice/seaice_growth.F Line 113  o pkg/seaice/seaice_growth.F
113      remove then obsolete STORE directives      remove then obsolete STORE directives
114    - fix STORE directives for tice and tices, so that only the    - fix STORE directives for tice and tices, so that only the
115      appropriate part of the fields are stored (and not the entire      appropriate part of the fields are stored (and not the entire
116      field)      field); update global_ocean.cs32x15.seaice AD output.
117    - cosmetic changes: adjust CPP flags and indentation for better    - cosmetic changes: adjust CPP flags and indentation for better
118      legibilty      legibilty
119  o pkg/autodiff: add mnc-output of adBottomDragFld (code contributed by  o pkg/autodiff: add mnc-output of adBottomDragFld (code contributed by
# Line 25  o pkg/gmredi: Line 122  o pkg/gmredi:
122     Add Sub-Meso Eddies parameterisation from Baylor (for now, disabled with TAF),     Add Sub-Meso Eddies parameterisation from Baylor (for now, disabled with TAF),
123     and test it in verification exp. "front_relax.bvp" (update output.bvp.txt)     and test it in verification exp. "front_relax.bvp" (update output.bvp.txt)
124    
125  checkpoint63 (2011/07/11)  checkpoint63  (2011/07/11)
126  o pkg/exch2:  o pkg/exch2:
127   - rename+move: nTiles in W2_EXCH2_PARAMS.h --> exch2_nTiles in W2_EXCH2_TOPOLOGY.h   - rename+move: nTiles in W2_EXCH2_PARAMS.h --> exch2_nTiles in W2_EXCH2_TOPOLOGY.h
128   - exch2 version of Cumul-Sum routine: S/R W2_SET_MAP_CUMSUM set up the   - exch2 version of Cumul-Sum routine: S/R W2_SET_MAP_CUMSUM set up the
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