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revision 1.1205 by jmc, Fri Dec 11 16:00:56 2009 UTC revision 1.1239 by jmc, Mon Mar 22 22:09:17 2010 UTC
# Line 4  $Name$ Line 4  $Name$
4      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
5      ==============================      ==============================
6    
7    checkpoint62d (2010/03/22)
8    o build_options:
9      remove '-r8' (and '-i4') from linux_*pgf and linux_*ifort optfiles.
10    o remove unbalanced quote (single or double) in commented line of source code
11      (may cause some warning with some preprocessor/makedepend versions).
12    o pkg/seaice:
13      fix seaice_model.F for adjoint (gael) and update AD results of experiments
14       lab_sea (std + evp + noseaicedyn) and offline_exf_seaice.
15    o testreport:
16      add option '-runonly' (short: '-ro') to just do the run part (without make).
17    o eesupp: remove JAM communication code (obsolete).
18    o add option to genmake2 & testreport to switch "_RS" type to "real*4"
19      (if allowed in CPP_EEOPTIONS.h); update default CPP_EEOPTIONS.h and return
20      to default CPP_EEOPTIONS.h for exp. inverted_barometer & solid-body.cs-32x32x1
21      (update also the output).
22    
23    checkpoint62c (2010/03/02)
24    o tools/build_options :
25       move (some) old optfiles from build_options/ to build_options/unsupported/
26    o model/src and pkg/exf
27       surface relaxation -- separating data and data.exf options
28       The point is to ensure that we specify the surface relaxation
29       either in data or in data.exf (but not half and half) and to
30       avoid an accidental relaxation to 0 (which happened if a time
31       scale was specified but the file name was left empty)
32    o model/src model/inc and pkg/mom_common
33       ALLOW_3D_VISCAH/ALLOW_3D_VISCA4 => 3D specification of Viscosity
34       => addition to the viscosity field as computed by others schemes
35    o tools/build_options:
36      - rename "_generic_mpi" -> "+mpi_generic" (like other "+mpi" optfile)
37        but keep the former optfile for few weeks for smooth transition
38    o pkg/ecco
39      - allow user defined cost function contributions
40            CPP: ALLOW_USERCOST_CONTRIBUTION
41            USAGE: compute contributions in cost_usercost_all.F
42      - note: this is identical to what ALLOW_GENCOST_CONTRIBUTION once was.
43          the two options are complementary.
44    o pkg/smooth
45      - migration from contrib to the main repository
46    
47    checkpoint62b (2010/01/26)
48    o pkg/monitor:
49      - change back mon_printstats_rl.F & mon_stats_rl.F and add a stop
50        (in case someone forgot to update customized pieces of code)
51    o nonHydrostatic:
52      - add Non-hydrostatic free-surface form (selectNHfreeSurf=1)(not fully tested);
53      - add a simple 2-D experiment (short_surf_wave) to test it.
54    o pkg/icefront:
55       adding the shell of, and the hooks to, a new package that
56       will model melting and freezing of vertical glacier ice fronts
57    o momentum:
58      add diagnostics of momentum tendency from Hydrostatic pressure gradient
59       (without surf.pressure term: would need a 2nd filling since implicit term).
60    o add 3 "_d 0"s so that fizhi compiles with xlf on iblade, and replace
61      two " &end" by " &" (in fizhi-cs-*) because S/R NML_SET_TERMINATOR
62      cannot deal with the former
63    o cleaning:
64      - remove all (except OpenAD) old TLM output from results_ad dirs.
65      - remove unused S/R (MDSWRITEMETA, DIAGNOSTICS_ADD2LIST, old DFILE IO S/R)
66      - comment out maskH definition (replaced by maskInC)
67    o pkg/monitor:
68      - change mon_printstats_rl.F & mon_stats_rl.F (were similar to mon_writestats_rl
69        & mon_calc_stats_rl) to be the RL equivalent of mon_printstats_rs & mon_stats_rs.
70    
71    checkpoint62a (2010/01/15)
72    o model/src:
73      - bottom pressure diagnostic: correct for r* (when nonlinFreeSurf >= 4)
74    o pkg/diagnostics:
75      - add optional level number diagnostics (i.e., level number to be define
76        explictly with S/R DIAGNOSTICS_SETKLEV) with parser-code(10)="X".
77      - strictly check for valid parser-code(10) ;
78      - check if adding diag to the list from the right place.
79    o pkg/longstep:
80      - change parameters and fix tracer conservation with rstar/nonlinear free surface
81    o diagnostics:
82     - in all pkgs, replace remaining calls to old S/R DIAGNOSTICS_ADD2LIST with newer
83       S/R DIAGNOSTICS_ADDTOLIST ; fix seaice VICE diagnostics.
84    o pkg/diagnostics:
85     - Add option for writing vertical integral (sum of selected levels) of an output
86        field instead of writing output field levels. Activate this option on a per
87        output-file basis, by setting the 2nd character of fileflag to 'I'.
88     - Add field-specific information relative to level integral in 3rd postion
89        of parser diagnostics code (gdiag): " "=cumulate levels, "R"=integrate
90        vertically (x level-thickness x hFac), "r"=same but without hFac.
91    o do_the_model_io:
92      - pass end-of-model-run flag as argument, from forward_step to diagnostics_write:
93        in case useSIGREG, will write (averaged) diagnostics (if dumpAtLast) before
94        writing pickups and stopping.
95    o pkg/diagnostics (for now, only with mdsio):
96      - write time information to meta file (and modify accordingly rdmds.m) :
97        time-averaged diagnostics output: write starting and ending time of the
98        time-averaging interval ; snap-shot diagnostics output remains unchanged;
99    o pkg/timeave:
100      - S/R TIMEAVE_NORMALIZ: change size of cumulated-time array (was previously
101        always Nr), now assumed to be equal to number of levels of averaged field;
102        only used for DIC_COST monthly mean arrays: this fixes dic_aver_final.F
103    o pkg/sbo:
104      - fix ocean bottom pressure global-average & 2-D time-ave output (was
105        neither initialised nor filled).
106      - add starting iteration in suffix of global-average output file
107        (to avoid over-writing the file after a restart)
108      - use standard MDSIO pkg S/R instead of SBO_WRITEVECTOR (fix byte-swap Pb).
109    o time-average:
110      - use simple cumulative-time array (no k index) in all pkgs: {PKG}_timeAve(bi,bj)
111        (pkgs: aim_v23, bulk_force, dic, gmredi, kpp, land, ocn_compon_interf,
112         ggl90, my82, opps, pp81, ptracers, sbo, seaice, shelfice, thsice)
113        this fix DIC_COST cumulative-time array (previously: bi,bj,k)
114      - fix 1rst call (nIter0) snap-shot output and accumulation (pkg/shelfice)
115      - fix missing accumulation for pkg/opps.
116      - cumulate fields only if doing time-ave output ({PKG}_taveFreq > 0)
117         (pkgs: ptracers, kpp, ocn_compon_interf, ggl90, my82, pp81);
118      - fix initialisation of time-ave vars and do only full time-step increment
119        (i.e.: no first & last "half time-step") (pkgs: ggl90, my82, opps, pp81);
120    o pkg/layers:
121      - use standard RW pkg S/R to write the output
122        and remove local write_fld version (which had a problem).
123      - use simple cumulative-time array (no level index) to fix time-ave S/R calls.
124      - fix LAYERS_CALC argument list.
125    o pkg/timeave:
126      - store cumulative-time in a simple tiled array (drop the level index)
127      - add new S/R (TIMEAVE_NORMALIZE) which uses simple cumulative-time array.
128    o pkg/ocn,aim_compon_interf
129      - changes for multi-threaded coupled run. (tested with ifort-11 on danton)
130    
131    checkpoint62  (2009/12/23)
132    o switch on useOBCSbalance in tutorial_plume_on_slope exp. and update output.
133        (was not previously tested in any other exp.)
134    o pkg/monitor:
135      - clean-up _RL/_RS version: add specific S/R for statistics with mask & volume:
136        mon_writestats_rl/s,F mon_calc_stats_rl/s.F ; will keep the old one
137        (mon_printstats_rl/s,F mon_stats_rl/s.F) just for bare statistics.
138      - use hFac & 2-D mask (instead of 3-D mask + hFac in previous mon_stats_rl.F).
139      - change del2 calculation.
140      - use interior masks (instead of maskH, <- to be remove).
141      - shorter monitor suffix for forcing stats ("forcing" instead of "extforcing").
142    o mask & obcs:
143      - define 2-D "interior" masks (i.e., zero beyond OB) at 3 locations (C, W & S).
144      - move global area computation from ini_masks_etc.F to ini_linear_phisurf.F
145        (called after packages_init_fixed)
146    o pkg/obcs:
147      - move bi,bj loops into obcs_calc, so obcs_prescribe_read is called only once.
148        Fixes bug in obcs+exf with nSx*nSy.GT.1
149      - fix multi-tile handling in obcs balance code
150  o nonHydrostatic:  o nonHydrostatic:
151    - Implement AB-3 for non-hydrostatic vertical momentum ;    - Implement AB-3 for non-hydrostatic vertical momentum ;
152      (change ordering of var. stored in pickup file when using NH)      (change ordering of var. stored in pickup file when using NH)
# Line 12  o nonHydrostatic: Line 155  o nonHydrostatic:
155      (in prep. for new NH free surface form).      (in prep. for new NH free surface form).
156  o pkg/obcs:  o pkg/obcs:
157    add files & OB-variables for wVel (Non-Hydrostatic) with useOBCSprescribe    add files & OB-variables for wVel (Non-Hydrostatic) with useOBCSprescribe
158  o model/src:  o model/src:
159    fix 2-D solver initialisation for deep-atmosphere (p-coord) with topography    fix 2-D solver initialisation for deep-atmosphere (p-coord) with topography
160    
161  checkpoint61z (2009/12/01)  checkpoint61z (2009/12/01)
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