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revision 1.1208 by jmc, Mon Dec 21 18:49:52 2009 UTC revision 1.1234 by jmc, Fri Mar 5 00:44:21 2010 UTC
# Line 4  $Name$ Line 4  $Name$
4      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
5      ==============================      ==============================
6    
7    o add option to genmake2 & testreport to switch "_RS" type to "real*4"
8      (if allowed in CPP_EEOPTIONS.h); update default CPP_EEOPTIONS.h and return
9      to default CPP_EEOPTIONS.h for exp. inverted_barometer & solid-body.cs-32x32x1
10      (update also the output).
11    
12    checkpoint62c (2010/03/02)
13    o tools/build_options :
14       move (some) old optfiles from build_options/ to build_options/unsupported/
15    o model/src and pkg/exf
16       surface relaxation -- separating data and data.exf options
17       The point is to ensure that we specify the surface relaxation
18       either in data or in data.exf (but not half and half) and to
19       avoid an accidental relaxation to 0 (which happened if a time
20       scale was specified but the file name was left empty)
21    o model/src model/inc and pkg/mom_common
22       ALLOW_3D_VISCAH/ALLOW_3D_VISCA4 => 3D specification of Viscosity
23       => addition to the viscosity field as computed by others schemes
24    o tools/build_options:
25      - rename "_generic_mpi" -> "+mpi_generic" (like other "+mpi" optfile)
26        but keep the former optfile for few weeks for smooth transition
27    o pkg/ecco
28      - allow user defined cost function contributions
29            CPP: ALLOW_USERCOST_CONTRIBUTION
30            USAGE: compute contributions in cost_usercost_all.F
31      - note: this is identical to what ALLOW_GENCOST_CONTRIBUTION once was.
32          the two options are complementary.
33    o pkg/smooth
34      - migration from contrib to the main repository
35    
36    checkpoint62b (2010/01/26)
37    o pkg/monitor:
38      - change back mon_printstats_rl.F & mon_stats_rl.F and add a stop
39        (in case someone forgot to update customized pieces of code)
40    o nonHydrostatic:
41      - add Non-hydrostatic free-surface form (selectNHfreeSurf=1)(not fully tested);
42      - add a simple 2-D experiment (short_surf_wave) to test it.
43    o pkg/icefront:
44       adding the shell of, and the hooks to, a new package that
45       will model melting and freezing of vertical glacier ice fronts
46    o momentum:
47      add diagnostics of momentum tendency from Hydrostatic pressure gradient
48       (without surf.pressure term: would need a 2nd filling since implicit term).
49    o add 3 "_d 0"s so that fizhi compiles with xlf on iblade, and replace
50      two " &end" by " &" (in fizhi-cs-*) because S/R NML_SET_TERMINATOR
51      cannot deal with the former
52    o cleaning:
53      - remove all (except OpenAD) old TLM output from results_ad dirs.
54      - remove unused S/R (MDSWRITEMETA, DIAGNOSTICS_ADD2LIST, old DFILE IO S/R)
55      - comment out maskH definition (replaced by maskInC)
56    o pkg/monitor:
57      - change mon_printstats_rl.F & mon_stats_rl.F (were similar to mon_writestats_rl
58        & mon_calc_stats_rl) to be the RL equivalent of mon_printstats_rs & mon_stats_rs.
59    
60    checkpoint62a (2010/01/15)
61    o model/src:
62      - bottom pressure diagnostic: correct for r* (when nonlinFreeSurf >= 4)
63    o pkg/diagnostics:
64      - add optional level number diagnostics (i.e., level number to be define
65        explictly with S/R DIAGNOSTICS_SETKLEV) with parser-code(10)="X".
66      - strictly check for valid parser-code(10) ;
67      - check if adding diag to the list from the right place.
68    o pkg/longstep:
69      - change parameters and fix tracer conservation with rstar/nonlinear free surface
70    o diagnostics:
71     - in all pkgs, replace remaining calls to old S/R DIAGNOSTICS_ADD2LIST with newer
72       S/R DIAGNOSTICS_ADDTOLIST ; fix seaice VICE diagnostics.
73    o pkg/diagnostics:
74     - Add option for writing vertical integral (sum of selected levels) of an output
75        field instead of writing output field levels. Activate this option on a per
76        output-file basis, by setting the 2nd character of fileflag to 'I'.
77     - Add field-specific information relative to level integral in 3rd postion
78        of parser diagnostics code (gdiag): " "=cumulate levels, "R"=integrate
79        vertically (x level-thickness x hFac), "r"=same but without hFac.
80    o do_the_model_io:
81      - pass end-of-model-run flag as argument, from forward_step to diagnostics_write:
82        in case useSIGREG, will write (averaged) diagnostics (if dumpAtLast) before
83        writing pickups and stopping.
84    o pkg/diagnostics (for now, only with mdsio):
85      - write time information to meta file (and modify accordingly rdmds.m) :
86        time-averaged diagnostics output: write starting and ending time of the
87        time-averaging interval ; snap-shot diagnostics output remains unchanged;
88    o pkg/timeave:
89      - S/R TIMEAVE_NORMALIZ: change size of cumulated-time array (was previously
90        always Nr), now assumed to be equal to number of levels of averaged field;
91        only used for DIC_COST monthly mean arrays: this fixes dic_aver_final.F
92    o pkg/sbo:
93      - fix ocean bottom pressure global-average & 2-D time-ave output (was
94        neither initialised nor filled).
95      - add starting iteration in suffix of global-average output file
96        (to avoid over-writing the file after a restart)
97      - use standard MDSIO pkg S/R instead of SBO_WRITEVECTOR (fix byte-swap Pb).
98    o time-average:
99      - use simple cumulative-time array (no k index) in all pkgs: {PKG}_timeAve(bi,bj)
100        (pkgs: aim_v23, bulk_force, dic, gmredi, kpp, land, ocn_compon_interf,
101         ggl90, my82, opps, pp81, ptracers, sbo, seaice, shelfice, thsice)
102        this fix DIC_COST cumulative-time array (previously: bi,bj,k)
103      - fix 1rst call (nIter0) snap-shot output and accumulation (pkg/shelfice)
104      - fix missing accumulation for pkg/opps.
105      - cumulate fields only if doing time-ave output ({PKG}_taveFreq > 0)
106         (pkgs: ptracers, kpp, ocn_compon_interf, ggl90, my82, pp81);
107      - fix initialisation of time-ave vars and do only full time-step increment
108        (i.e.: no first & last "half time-step") (pkgs: ggl90, my82, opps, pp81);
109    o pkg/layers:
110      - use standard RW pkg S/R to write the output
111        and remove local write_fld version (which had a problem).
112      - use simple cumulative-time array (no level index) to fix time-ave S/R calls.
113      - fix LAYERS_CALC argument list.
114    o pkg/timeave:
115      - store cumulative-time in a simple tiled array (drop the level index)
116      - add new S/R (TIMEAVE_NORMALIZE) which uses simple cumulative-time array.
117    o pkg/ocn,aim_compon_interf
118      - changes for multi-threaded coupled run. (tested with ifort-11 on danton)
119    
120    checkpoint62  (2009/12/23)
121  o switch on useOBCSbalance in tutorial_plume_on_slope exp. and update output.  o switch on useOBCSbalance in tutorial_plume_on_slope exp. and update output.
122      (was not previously tested in any other exp.)      (was not previously tested in any other exp.)
123  o pkg/monitor:  o pkg/monitor:
124    - clean-up _RL/_RS version: add specific S/R for statistics with mask & volume:    - clean-up _RL/_RS version: add specific S/R for statistics with mask & volume:
125      mon_writestats_rl/s,F mon_calc_stats_rl/s.F ; will keep the old one      mon_writestats_rl/s,F mon_calc_stats_rl/s.F ; will keep the old one
126      (mon_printstats_rl/s,F mon_stats_rl/s.F) just for bare statistics.      (mon_printstats_rl/s,F mon_stats_rl/s.F) just for bare statistics.
127    - use hFac & 2-D mask (instead of 3-D mask + hFac in previous mon_stats_rl.F).    - use hFac & 2-D mask (instead of 3-D mask + hFac in previous mon_stats_rl.F).
128    - change del2 calculation.    - change del2 calculation.
# Line 16  o pkg/monitor: Line 130  o pkg/monitor:
130    - shorter monitor suffix for forcing stats ("forcing" instead of "extforcing").    - shorter monitor suffix for forcing stats ("forcing" instead of "extforcing").
131  o mask & obcs:  o mask & obcs:
132    - define 2-D "interior" masks (i.e., zero beyond OB) at 3 locations (C, W & S).    - define 2-D "interior" masks (i.e., zero beyond OB) at 3 locations (C, W & S).
133    - move global area computation from ini_masks_etc.F to ini_linear_phisurf.F    - move global area computation from ini_masks_etc.F to ini_linear_phisurf.F
134      (called after packages_init_fixed)      (called after packages_init_fixed)
135  o pkg/obcs:  o pkg/obcs:
136    - move bi,bj loops into obcs_calc, so obcs_prescribe_read is called only once.    - move bi,bj loops into obcs_calc, so obcs_prescribe_read is called only once.
# Line 30  o nonHydrostatic: Line 144  o nonHydrostatic:
144      (in prep. for new NH free surface form).      (in prep. for new NH free surface form).
145  o pkg/obcs:  o pkg/obcs:
146    add files & OB-variables for wVel (Non-Hydrostatic) with useOBCSprescribe    add files & OB-variables for wVel (Non-Hydrostatic) with useOBCSprescribe
147  o model/src:  o model/src:
148    fix 2-D solver initialisation for deep-atmosphere (p-coord) with topography    fix 2-D solver initialisation for deep-atmosphere (p-coord) with topography
149    
150  checkpoint61z (2009/12/01)  checkpoint61z (2009/12/01)
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