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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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o pkg/salt_plume: clean up salt_plume_frac.F to |
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remove redundancy in PlumeMethod 1 and 4 |
| 9 |
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o pkg/kpp: added saltplume diagnostics |
| 10 |
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o pkg/obcs and pkg/seaice: |
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- do not set uice and vice to zero when OB*icefile are unspecified |
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- OBCS_SEAICE_AVOID_CONVERGENCE is undefined by default |
| 13 |
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- moved seaice tracer obcs after call to seaice_growth |
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o pkg/salt_plume: added various options for salt plume depth |
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criterion and for vertical distribution of the salt |
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checkpoint59l |
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o pkg/ptracers: new version of ptracers pickup: |
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read meta file and write only fields which are needed to restart. |
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( same logic as main pickup file ; also using pickupStrictlyMatch ) |
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o pkg/seaice: |
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- add timescale for melting due to warm mixed layer as a means of |
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setting SEAICE_availHeatFrac more conveniently |
| 24 |
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- add a CPP-flag/runtime parameter check for flooding algorithm |
| 25 |
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- reformulated availHeat in seaice_growth.F to be independent of AREA |
| 26 |
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o change units attribute of EmPmR netcdf variables to kg/m^2/s to reflect recent |
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unit changes |
| 28 |
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o pkg/obcs: added OBCS_SEAICE_AVOID_CONVERGENCE constraint |
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o cg2d.F: add 3 compiler directives that speed up this routine by 30% on a NEC |
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SX vector computer. |
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o pkg/seaice: |
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- removed SEAICE_FFIELDS.h and seaice_get_forcing.F |
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seaice forcing fields can now be read only through pkg/exf |
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- removed some unused halos |
| 35 |
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o no longer write pickup from THE_MODEL_MAIN but always from FORWARD_STEP |
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o pkg/exf: added useRelativeWind EXF_PARAM.h option for subtracting U/VVEL |
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or U/VICE from U/VWIND before computing U/VSTRESS |
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checkpoint59k |
| 40 |
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o pkg/seaice: ICE2WATR=SEAICE_rhoIce/rhoConst for consistency between |
| 41 |
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dynamics and thermodynamics. Set ICE2WATR=0.92 to reproduce older results. |
| 42 |
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o fix un-initialised variable problem (in mom_vecinv & shap_filt): |
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all experiments pass when compile with un-initialised var. checking option. |
| 44 |
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o added pkg/salt_plume |
| 45 |
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o script to test restart (for now, in MITgcm_contrib/jmc_script) |
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o pkg/seaice: new read/write pickup version. |
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read meta file and write only fields which are needed to restart. |
| 48 |
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( same logic as main pickup file ; also using pickupStrictlyMatch ) |
| 49 |
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o pkg/seaice: fix bug in seaice_ocean_stress (call of seaice_calc_strainrates) |
| 50 |
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o lab_sea.hb87: modify the domain & update output.hb87.txt : |
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lat-long grid & no-slip BC in seaice-dynamics produce different sigma12 |
| 52 |
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at j=1 & j=Ny+1 : this case is not treated correctly in the restart |
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process. Fixed here by closing the domain at the Northern boundary. |
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o pkg/rw: cleaning-up: call directly new MDSIO S/R MDS_READ/WRITE_FIELD. |
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o pkg/mdsio: add new arguments to MDS_READ/WRITE_FIELD for reading/writing |
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a set of consecutive levels in/from a 3-D array. |
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o pkg/ptracers: |
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use a 2 characters string ioLabel to identify tracer (if more than 99 tracers). |
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to-do: fix pkg/diagnostics when large number of diagnostics are defined. |
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checkpoint59j |
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o in pkgs: dic, obcs, offline, rbcs: |
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standard way to compute coeff. for time interpolation between 2 time reccords |
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which retains full precision (& make results less dependent on compiler). |
| 65 |
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update output of exp: tutorial_cfc_offline & tutorial_global_oce_biogeo. |
| 66 |
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o pkg/cfc: if compiled with exf and seaice, cfc now can use fields from those |
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packages instead of reading ice cover and wind speed separately |
| 68 |
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o split PTRACERS.h in 2 header files: PTRACERS_FIELDS.h & PTRACERS_PARAMS.h |
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(keep a temporary version of PTRACERS.h in verification/OpenAD/code_ad_openad |
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to allow to compile customized code before the update) |
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o cleaning-up: |
| 72 |
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- fix CPP instruction syntax in pkg/obcs |
| 73 |
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- replace (some) call to MDSIO S/R with call to RW interface S/R ; and |
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add #ifdef ALLOW_MDSIO elsewhere (allows to compile without pkg/mdsio) |
| 75 |
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- fix some threads issue in IO parts. |
| 76 |
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o pkg/dic: |
| 77 |
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- add tons of "_d 0" (--> much better testreports !) |
| 78 |
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and then update outputs of tutorial_global_oce_biogeo |
| 79 |
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o pkg/mom_fluxform: |
| 80 |
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add a special version of momentum advection intended to conserve momentum |
| 81 |
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next to a bathymetry step or a coastline edge. (default = off = #undef) |
| 82 |
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o new read/write pickup version: |
| 83 |
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- for now, only implemented for main (mdsio) pickup file. |
| 84 |
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- write out only what is needed to restart; merge pickup_nh , pickup_ph |
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and main pickup together. |
| 86 |
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- read meta file; read only what is needed to restart; stop if a field |
| 87 |
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is missing (if pickupStrictlyMatch=T, = the default) or try to restart |
| 88 |
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if it make sense (even if the restart is not perfect). |
| 89 |
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- if no meta file, assume that pickup to read corresponds exactly to |
| 90 |
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a pickup that would currently be written. |
| 91 |
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- read pickup written in the old format (until checkpoint59i) if it |
| 92 |
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recognizes an old meta file (no field-list). |
| 93 |
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- add a meta file in exp. which starts from a pickup: 2 cases: |
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a) minimal meta file (with just file precision) + pickupStrictlyMatch=F |
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e.g.: global_ocean.90x40x15/input/pickup.0000036000.meta |
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b) a meta file describing the content of the associated pickup file |
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e.g.: tutorial_global_oce_biogeo/input/pickup.0004248000.meta |
| 98 |
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o pkg/mdsio & pkg/rw: |
| 99 |
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- new routine to read a meta file ; new set of routine to read |
| 100 |
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Multiple-fields file (with meta file). |
| 101 |
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o added open boundary conditions capability for seaice |
| 102 |
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HSNOW, HSALT, UICE, and VICE |
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| 104 |
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checkpoint59i |
| 105 |
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o adjoint: |
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* fix multiDimAdvection adjoint |
| 107 |
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(partial recomputation problem by TAF for fVerT(:,:,kDown) |
| 108 |
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and comlev1 size definition (maxpass vs. max. number of tracers) |
| 109 |
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* verification/global_ocean.90x45x15 adjoint now tests |
| 110 |
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NLFS and multiDimAdvection using DST3 (=30) |
| 111 |
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* verification/lab_sea now tests multiDimAdvection using DST3 (=30) |
| 112 |
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o pkg/kpp: add "_d 0" to real constant (if missing); |
| 113 |
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update output of exp: natl_box (10.digits); vermix (std, 7.digits) |
| 114 |
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and lab_sea, 3.FW (only 6,4,6 digits match) & AD (8.digits). |
| 115 |
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o prepare for "clever pickup" implementation: add new header file "RESTART.h" |
| 116 |
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for internal parameters related to restart process (formerly from PARAMS.h) |
| 117 |
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and add startAB parameter to argument list of S/R ADAMS_BASHFORTH2. |
| 118 |
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o more standard interface to {PKG}_WRITE_PICKUP with pickup suffix passed |
| 119 |
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as argument. (only atm2d & obcs write_pickup have not yet been updated) |
| 120 |
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o pkg/monitor: |
| 121 |
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- use GLOBAL_SUM_TILE instead of _GLOBAL_SUM |
| 122 |
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- fix mon_stats_rs (statistics over the full domain, even where field is zero) |
| 123 |
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- account for deep Atmosphere factor and density factor (anelastic) |
| 124 |
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o added open boundary conditions capability for seaice HEFF and AREA |
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o pkg/shelfice: add option for convservative form of Hellmer&Olbers (1989) |
o pkg/shelfice: add option for convservative form of Hellmer&Olbers (1989) |
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thermodynamics |
thermodynamics |
| 127 |
- requires a little reorganization, which affects the testreport results |
- requires a little reorganization, which affects the testreport results |
| 128 |
of isomip.htd (only 7 digits of cg2d agree) => update/modify experiment, |
of isomip.htd (only 7 digits of cg2d agree) => update/modify experiment, |
| 129 |
so that now the conservative form is tested |
so that now the conservative form is tested |
| 130 |
- add a few comments |
- add a few comments |
| 131 |
o add missing cvs $Header$ or $Name$ in eesupp/*, pkg/* & verification/code* |
o add missing cvs Header: or Name: in eesupp/*, pkg/* & verification/code* |
| 132 |
o add a little bit of code to gad_os7mp_adv_?.F to help vectorization |
o add a little bit of code to gad_os7mp_adv_?.F to help vectorization |
| 133 |
o add new diagnostics to seaice: advective, diffusive fluxes (only for |
o add new diagnostics to seaice: advective, diffusive fluxes (only for |
| 134 |
multidim-advection, for scheme 2 they are not filled) and transports, |
multidim-advection, for scheme 2 they are not filled) and transports, |
| 135 |
thermodynamic growth rates |
thermodynamic growth rates |
| 136 |
o change units of EmPmR (inside the code) from m/s to kg/m2/s (mass flux) but |
o change units of EmPmR (inside the code, + within coupling interface) |
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leave input file unchanged. Affects results @ truncation level (cg2d match) |
from m/s to kg/m2/s (mass flux) but leave input file unchanged. |
| 138 |
and update output of experiments: lab_sea(6), global_ocean.90x40x15(10), |
Affects results @ truncation level (cg2d match) and update output of |
| 139 |
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experiments: lab_sea(6), global_ocean.90x40x15(10), |
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global_ocean.cs32x15(11x3,10), natl_box(11), tutorial_global_oce_latlon(11) |
global_ocean.cs32x15(11x3,10), natl_box(11), tutorial_global_oce_latlon(11) |
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+ adjoint results: global_ocean_ebm(11) and lab_sea (12). |
+ adjoint results: global_ocean_ebm(11) and lab_sea (12). |
| 142 |
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Coupled set-up: allow to restart from previous pickups (cpl_oldPickup=T). |
| 143 |
Next: will retire convertEmP2rUnit (simply using mass2rUnit instead). |
Next: will retire convertEmP2rUnit (simply using mass2rUnit instead). |
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checkpoint59h |
checkpoint59h |
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