4 |
Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
5 |
============================== |
============================== |
6 |
|
|
7 |
|
o pkg/seaice |
8 |
|
- check for inconsistent evp parameter/cpp-flag combination |
9 |
|
- remove leftover errIO flat for obsolete name list error handling |
10 |
|
|
11 |
|
checkpoint59a |
12 |
|
o pkg/seaice: some parameter clarifications and a little bit of clean up |
13 |
|
o pkg/thsice: rename run-time parameters: |
14 |
|
himin -> hIceMin |
15 |
|
himin0 -> hThinIce |
16 |
|
hihig -> hThickIce |
17 |
|
i0 -> i0swFrac |
18 |
|
transCoef -> bMeltCoef |
19 |
|
frac_energy -> fracMelting |
20 |
|
add new parameters: hNewIceMax, fracFreezing, dhSnowLin |
21 |
|
with default values (for now) that do not change the results. |
22 |
|
remove old version of thsice vars advection in pkg/seaice. |
23 |
|
o in FFIELDS.h: |
24 |
|
- replace #ifndef ALLOW_EXF by #ifndef EXCLUDE_FFIELDS_LOAD |
25 |
|
- make pLoad & sIceLoad always available (but still only used if |
26 |
|
ATMOSPHERIC_LOADING is #define). |
27 |
|
o pkg/kpp: replaced _KPP_RL with _RL |
28 |
|
o bug fixes for vertical diffusivity computations when both KPP and |
29 |
|
3D diffusivity arrays are used. |
30 |
|
o pkg/seaice: fix bug in evp solver, while doing that |
31 |
|
- change (improve?) discretization of stress computations for both |
32 |
|
cgrid-lsr and evp solver |
33 |
|
- add a new routine to compute strain rates |
34 |
|
- the above changes lab_sea results |
35 |
|
- add no slip conditions for evp solver (off by default), lsr-version |
36 |
|
may follow |
37 |
|
- fix exchange for shear at Z-points (does not change lab_sea) |
38 |
|
- retire SEAICEuseEVP, instead turn on EVP by setting SEAICE_deltaTevp |
39 |
|
(to force the user to pick a time step since there is not "safe" way |
40 |
|
of choosing it) |
41 |
|
- add principal stress diagnostics |
42 |
|
- rearrange fields for evp a little to avoid having to call a: too many |
43 |
|
exchanges and b: exchanges for stress trensor components which we do |
44 |
|
not have. |
45 |
|
- modify Hibler+Bryan (1987) stress coupling so that it reuses information |
46 |
|
of evp, complete rewrite for lsr case (latter is does not yet work |
47 |
|
in all cases) |
48 |
|
o pkg/kpp: add code to have mixing in shelf ice caverns |
49 |
|
- add myThid to all kpp routines (long overdue) |
50 |
|
|
51 |
|
checkpoint59 |
52 |
|
o pkg/exf: |
53 |
|
- fix wind-stress location: defined on A-grid (if ALLOW_ATM_WIND & |
54 |
|
ALLOW_BULKFORMULAE or USE_EXF_INTERPOLATION), otherwise, defined on C-grid |
55 |
|
- move exf header files from lower_case.h to UPPER_CASE.h ; |
56 |
|
add missing cvs Header & Name |
57 |
|
- add adjoint routines and flow dirs for newly used exch_uv_agrid routines |
58 |
|
- add namelist param. selectStressGridPosition, exf_monFreq |
59 |
|
- retire many _CLIM routines, and remove data.exf_clim |
60 |
|
+ params moved to data.exf |
61 |
|
+ climsst, climsss now handled by exf_set_gen, i.e. |
62 |
|
climss?period=0 refers to constant field, |
63 |
|
climss?period=-12 to monthly forcing |
64 |
|
- split up namelists in data.exf |
65 |
|
o pkg/seaice: |
66 |
|
- remove seaice_exch and seaice_exch_uv |
67 |
|
- remove superfluous exchange of theta |
68 |
|
- add myThid to seaice_budget_ocean/ice |
69 |
|
- add new interface for atmospheric wind forcing (C-grid only) |
70 |
|
+ new routine |
71 |
|
+ two new field (taux, tauy for stress over ice) |
72 |
|
+ removed one global field (DAIRN) for C-grid case only |
73 |
|
o pkg/thsise |
74 |
|
- 2nd set of modifs for thsice adjoint in conjunction with exf |
75 |
|
o enable runtime flag useEXF (useCAL is set to .T. if useEXF=.T.) |
76 |
|
|
77 |
|
checkpoint58y_post |
78 |
|
o Added capability for latitudinal dependence of Bryan and Lewis, 1979 |
79 |
|
vertical diffusivity, similar to that in MOM4; turned on using |
80 |
|
#define ALLOW_BL79_LAT_VARY in CPP_OPTIONS.h and specified using |
81 |
|
diffKrBL79*, diffKrBLEQ*, and BL79LatVary in runtime data file. |
82 |
|
o Added capability for 3D specification of background vertical diffusion |
83 |
|
coefficient. This is done by (i) #define ALLOW_3D_DIFFKR |
84 |
|
in CPP_OPTIONS.h and (ii) specifying file diffKrFile in runtime |
85 |
|
"data" file that contains the 3D vertical diffusivity coefficients. |
86 |
|
o ice dynamics (pkg/seaice) with thsice thermodynamics: |
87 |
|
- add code within pkg thsice to advect & diffuse sea-ice fields |
88 |
|
similar to (and will replace) what has been added in seaice_advdiff.F, |
89 |
|
but: - conserving Mass, Heat & Salt. |
90 |
|
- better when using non-linear advection scheme (not yet fully tested) |
91 |
|
- can also be used in atmospheric set-up (for now, only the diffusion). |
92 |
|
|
93 |
|
checkpoint58x_post |
94 |
|
o IO option for global-file compact format: |
95 |
|
- add options when generating topology (utils/exch2/matlab-topology-generator) |
96 |
|
- add I/O capability (pkg/mdsio). |
97 |
|
- adapt utils/matlab/rdmds.m to read this format. |
98 |
|
for now long-line format not yet supported by pkg/mdsio (& exch2). |
99 |
|
o shelfice: add a few diagnostics |
100 |
|
|
101 |
|
checkpoint58w_post |
102 |
|
o p-coord. non-hydrostatic using reference profile for w <-> omega conversion: |
103 |
|
rVel2wUnit & wUnit2rVel are computed from reference profile Tref,Sref |
104 |
|
(and replace horiVertRatio in NH code). |
105 |
|
Update output of exp.: tutorial_global_oce_in_p (useNHMTerms !) |
106 |
|
and tutorial_plume_on_slope (sensitive to truncation) |
107 |
|
o seaice: if ALLOW_ATM_WIND is undefined use wind stress |
108 |
|
directly to drive seaice model (C-grid only) |
109 |
|
o exf: when input wind-stress (#undef ALLOW_ATM_WIND): |
110 |
|
- reintroduce computation of wind from stress, |
111 |
|
- compute tau (in exf_bulkformulae.F) from windstress averaged to |
112 |
|
mass points to avoid tau = 0 |
113 |
|
- fix serious bug: (1/3) in Fortran is not the same as (1./3.) |
114 |
|
o rdmnc.m: make it work with "global" files created with gluemnc |
115 |
|
o rdmnc.m : some improvements in dealing with singleton dimension |
116 |
|
(tested on all testreport mnc output files). |
117 |
|
o genmake2: disable pkg/profiles if netcdf test fails. |
118 |
|
o cpl_aim+ocn exp.: use consistent rhoConstFresh in Atm & Ocn; update output. |
119 |
|
o move call to cal_readparms up to make calendar parameters/variable available |
120 |
|
to all packages |
121 |
|
|
122 |
|
checkpoint58v_post |
123 |
|
o change EOS (from POLY3 to JMD95P) in global_ocean.90x45x15 to get |
124 |
|
useDynP_inEos_Zc tested. |
125 |
|
o pkg/exf: changes to properly interpolate/mask/scale initial fields |
126 |
|
o utils/matlab/cs_grid/read_cs: routines to speed up reading of CS510 fields |
127 |
|
and portions thereof. See read_cs.txt for description and examples. |
128 |
|
o utils/matlab/cs_grid/bk_line: to compute transport through passages, |
129 |
|
add a script (grt_circ_bkl.m) to generate broken-line between 2 points, |
130 |
|
following the great-circle arc between those 2 points. |
131 |
|
o trap un-initialized variable with pathscale compiler on weddell.mit.edu |
132 |
|
(thanks to Constantinos): fix few problems and get (almost) all exp to pass. |
133 |
|
o 2nd-Order Moment Advection Scheme (Prather, 1986): first check-in |
134 |
|
- enable by setting #define GAD_ALLOW_SOM_ADVECT (in GAD_OPTIONS.h) |
135 |
|
- used without limiter (AdvScheme=80) or with Prather limiter (AdvScheme=81) |
136 |
|
- still needs work (not working with some options ; efficiency to improve) |
137 |
|
and serious testing. |
138 |
|
- use this scheme for temperature & salinity in 2 advection test exp.: |
139 |
|
advect_xy & advect_xz, respectively. |
140 |
|
|
141 |
|
checkpoint58u_post |
142 |
|
o new test-exp: fizhi-cs-32x32x40 (40 levels) to replace the 10 levels. |
143 |
|
o move call to INI_FORCING from PACKAGES_INIT_VARIABLES to INITIALISE_VARIA. |
144 |
|
o testreport: add option "-skipdir" to skip some test. |
145 |
|
o exf: when input wind-stress (#undef ALLOW_ATM_WIND), by-pass turbulent |
146 |
|
momentum calculation. |
147 |
|
o gad_advection: fix vertAdvecScheme (if different from advectionScheme) |
148 |
|
o some cleaning: usePickupBeforeC35 no longer supported ; remove this option. |
149 |
|
remove checkpoint.F and the_correction_step.F (no longer used); |
150 |
|
do the k loop inside CYCLE_TRACER (supposed to be more efficient). |
151 |
|
o add option (linFSConserveTr) to correct for tracer source/sink due to |
152 |
|
Linear Free surface |
153 |
|
o pkg/seaice: fix a bug in the flooding algorithm: turn off the snow machine |
154 |
|
o pkg/thsice: fix reading mnc-pickups |
155 |
|
|
156 |
|
checkpoint58t_post |
157 |
|
o pkg/diagnostics: fix multi-threaded output (when singleCpuIO=F) |
158 |
|
o pkg/mdsio: |
159 |
|
- clean-up mdsio_readfield.F & mdsio_writefield_new.F and |
160 |
|
move to new files: mdsio_read_field.F (S/R MDS_READ_FIELD) & |
161 |
|
mdsio_write_field.F (S/R MDS_WRITE_FIELD); |
162 |
|
- fix multi-threaded singleCpuIO option in MDS_WRITE_FIELD |
163 |
|
- collect old S/R in one file: mdsio_rw_field.F (now just a call to |
164 |
|
either MDS_READ_FIELD or MDS_WRITE_FIELD ) |
165 |
|
- new S/R (to replace MDSWRITEMETA), which allows to write more |
166 |
|
informations (variable names, time ...) to meta files. |
167 |
|
- modify rdmds.m to give back the meta file content. |
168 |
|
o pkg/diagnostics: change vertical interpolation to be safer, and more |
169 |
|
flexible (define p-levels to interpolate to in data.diagnostics); |
170 |
|
add argument to S/R DIAGNOSTICS_GET_POINTERS to catch the right |
171 |
|
diagnostic pointer. |
172 |
|
o pkg/seaice: more cleaning up of seaice_growth, added many comments |
173 |
|
o pkg/exf: put runoff0 and runoff1 into the appropriate common block |
174 |
|
o fix multi-category seaice: |
175 |
|
- change cpp flag SEAICE_MULTILEVEL to more meaningful name: |
176 |
|
SEAICE_MULTICATEGORY |
177 |
|
- fix short wave heat flux |
178 |
|
o pkg/seaice: change default (SEAICE_OPTIONS.h): use C-grid dynamics |
179 |
|
and allow to use EVP solver. Change forward lab_sea: test both EVP |
180 |
|
solver and LSR solver, and use C-grid dynamics (like lab_sea adjoint) |
181 |
|
o Initial check-in of lab_sea adjoint |
182 |
|
(very similar to natl_box_adjoint/code_seaice) |
183 |
|
* used C-grid and EVP solver |
184 |
|
* used KPP, GM/Redi |
185 |
|
* uses inAdExact=.TRUE. |
186 |
|
* gradient checks fail for both ADM and TLM |
187 |
|
due to sensitive snow melt code in seaice_grwoth (look for "JZ") |
188 |
|
f.d. gradients actually seem more problematic than ADM, TLM gradients; |
189 |
|
issue is related to forward mismatch between g77 an ifort |
190 |
|
o pkg/seaice: overhaul of thermodynamics |
191 |
|
- growth.F and groatb.F are replaced by new routine seaice_growth.F |
192 |
|
- budget.F is replaced by two new routines seaice_budget_ocean/ice.F |
193 |
|
- move a few global fields out of SEAICE.h into seaice_growth.F and |
194 |
|
make them 2D (FICE/QNETO/ ...) |
195 |
|
- remove FO (it is the same as QNETO) |
196 |
|
- introduce a few local fields to avoid modifying external fields such |
197 |
|
as atemp, etc. |
198 |
|
|
199 |
|
checkpoint58s_post |
200 |
|
o pkg/exf: moved exf_init_runoff.F to exf_init.F and exf_set_gen.F |
201 |
|
changed exf_set_gen.F so that |
202 |
|
genperiod=0 means input file is one time-constant field and |
203 |
|
genperiod=-12 means input file contains 12 monthly means |
204 |
|
o CG2D: use pre-computed solver main-diagonal (stored in common block); |
205 |
|
this affects truncation error ; generate new output file for exp. which |
206 |
|
fails: exp4(12d), fizhi-cs-aqualev20(12d), front_relax(10d), |
207 |
|
global_ocean.90x40x15(10d), global_ocean.cs32x15(10d).thsice(11d).viscA4(10d), |
208 |
|
ideal_2D_oce(10d), internal_wave(09d), isomip.htd(11d), matrix_example(07d), |
209 |
|
MLAdjust(4x11d,12d), natl_box(11d), rotating_tank(12d), |
210 |
|
tutorial_global_oce_in_p(10d), tutorial_plume_on_slope(11d), |
211 |
|
vermix(12d).ggl90(12d).my82(11d).opps(12d).pp81(11d) |
212 |
|
o start implementation of deep-atmosphere and anelastic formulation |
213 |
|
o verification: remove 2nd copy of input files and use script "prepare_run" |
214 |
|
to make a symbolic link to the 1rst copy (reduce downloaded size by ~81.M) |
215 |
|
o mom_common/vecinv/fluxform: fix a few initialisation isssues |
216 |
|
o profiles: fix for multithreaded case |
217 |
|
|
218 |
|
o diagnostics: rename few diags: |
219 |
|
s/'PRESSURE'/'RCENTER '/g |
220 |
|
s/'TICE '/'oceFreez'/g |
221 |
|
s/'TAUX '/'oceTAUX '/g |
222 |
|
s/'TAUY '/'oceTAUY '/g |
223 |
|
s/'SWFLUX '/'oceQsw '/g |
224 |
|
s/DIFx/DFxE/g |
225 |
|
s/DIFy/DFyE/g |
226 |
|
and add few ocean-forcing diagnostics: |
227 |
|
atmPload, sIceLoad, oceQnet, oceFWflx, oceSflux, surForcT & surForcS |
228 |
|
o modifications to pkg/seaice/growth.F and budget.F, which change results of |
229 |
|
lab_sea experiment: HSNOW was sometimes treated as effective and sometimes |
230 |
|
as actual snow thickness. It now refers everywhere to effective snow |
231 |
|
thickness, meaning that for non-zero AREA, actual thickness is HEFF/AREA. |
232 |
|
|
233 |
|
checkpoint58r_post |
234 |
|
o modifications to pkg/seaice/growth.F, which change results of |
235 |
|
lab_sea experiment: fixes pertain to melting snow over open water, to |
236 |
|
masking EVAP under sea ice, and to using the correct AREA variable for |
237 |
|
computations of EVAP, PRECIP, HSNOW, and GHEFF |
238 |
|
o add ability to read bathy, salt, and theta using MNC (off by def) |
239 |
|
o add flooding algorithm and advection of HSNOW for pkg/seaice; |
240 |
|
both are turned off by default and do no change any results |
241 |
|
o seaice advection with pkg/thsice: a step toward the use of non-linear |
242 |
|
advection scheme, but #ifdef or commented out for now (requires more EXCH). |
243 |
|
o use standard version of PTRACERS_INI_VARIA in tutorial_tracer_adjsens |
244 |
|
(identical results) and the standard version of EXTERNAL_FIELDS_LOAD |
245 |
|
in natl_box (affects results @ truncation level: update output.txt) |
246 |
|
o multi-threading and IO: |
247 |
|
- replace some call to MDSIO S/R by the corresponding READ/WRITE_FLD S/R. |
248 |
|
- remove most of BEGIN_MASTER/ END_MASTER around READ/WRITE_FLD S/R calls |
249 |
|
(needed to work with SingleCpuIO): tested in all verif. exp. |
250 |
|
o GAD: use simpler DST3 formulation as default (old version left within #ifdef) |
251 |
|
affects the results (but none of the verification test uses this scheme). |
252 |
|
o Adding some pkg/diagnostics capability to pkg/seaice |
253 |
|
(will certainly be subject to changes) |
254 |
|
o ctrl: adding new control variables: |
255 |
|
lwflux, lwdown, evap, snowprecip, apressure, runoff |
256 |
|
|
257 |
|
checkpoint58q_post |
258 |
|
o added CPP_EEOPTIONS.h flag DISABLE_MPI_READY_TO_RECEIVE. Speeds up |
259 |
|
1/6-deg Southern Ocean configuration by 8% on IBM Datastar and |
260 |
|
high_res_cube configuration by 4% on Columbia. |
261 |
|
o clean-up multi-threaded problems (reported by debugger tcheck on ACES); |
262 |
|
add (in global_with_exf/code) a version of EXF_INTERP_READ without |
263 |
|
dynamical allocation (seems to work in multi-threaded). |
264 |
|
o new function "MASTER_CPU_IO" (=T if master thread & master CPU, if using |
265 |
|
single CPU io) so that TAF does not have to see EESUPPORT.h |
266 |
|
o pkg/seaice: implement sea-ice loading (when using RealFreshWaterFlux) |
267 |
|
|
268 |
|
checkpoint58p_post |
269 |
|
o obcs: stop if obcs is used with useCDscheme = .true. |
270 |
|
o shelfice: |
271 |
|
- fix a sign error so that no slip at shelfice interface works |
272 |
|
- remove stop for combination non-hydrostatic code and shelfice. That does |
273 |
|
not mean, that the results are correct, but at least they are numerically |
274 |
|
stable |
275 |
|
o diagnoctics: modify UVELPHI and VVELPHI to include hfac (i.e. mass-weighted) |
276 |
|
o added adjoint exch routined for all exch*3d* routines |
277 |
|
and updated flow directives |
278 |
|
|
279 |
|
checkpoint58o_post |
280 |
|
o replace calls to EXCH_Z & EXCH_UV_AGRID: use the new _3D_ version ; |
281 |
|
remove old subroutines (_XY_ & _XYZ_); update the adjoint version. |
282 |
|
o change controling S/R for writing pickup file (new S/R do_write_pickup) |
283 |
|
and clean-up reading/writing of pickup files. |
284 |
|
o fix local version of read/write pickup (NH part) in rotating_tank/code |
285 |
|
o simplify EXCH interface: |
286 |
|
- change _XYZ_ interface to _3D_ subroutine (with 3rd dim in argument list) |
287 |
|
- not often used EXCH S/R (exch_z, exch_uv_agrid): keep only the _3D_ version |
288 |
|
o added the regrid package |
289 |
|
o shelfice: |
290 |
|
- add a simple boundary layer scheme to reduce noise |
291 |
|
- fix the indexing in shelfice_u/v_drag so that there will be actually drag |
292 |
|
|
293 |
|
checkpoint58n_post |
294 |
|
o fix globalArea multi-threaded calculation: need to apply GLOBAL_SUM to |
295 |
|
local variable (not in common block). |
296 |
|
o lot of small changes for multi-threaded. Most tests (using OMP & ifort) pass. |
297 |
|
- still problems with pkgs: mnc, exp2, dic, cal, exf (and probably more); |
298 |
|
- still BEGIN_MASTER/END_MASTER to remove around READ/WRITE_FLD S/R calls |
299 |
|
to work with SingleCpuIO. |
300 |
|
o add "_d 0" to real constant of pkg/cfc subroutines ; |
301 |
|
update exp. cfc_exemple & tutorial_cfc_offline output files. |
302 |
|
o multi-threading and IO: |
303 |
|
- all threads call READ_FLD S/R (needed if using SingleCpuIO): |
304 |
|
(no BEGIN_MASTER/ END_MASTER around the call, but inside MDSIO S/R. |
305 |
|
- barrier before and after reading. |
306 |
|
- stop if other than master is calling MDS_WRITELOCAL (if #undef IO_THREAD_SAFE) |
307 |
|
- avoid using MDS_WRITELOCAL for LAND pkg output. |
308 |
|
- new S/R AIM_WRITE_PHYS (replaces AIM_WRITE_LOCAL) to write AIM physics |
309 |
|
common-block variables ; Allows multi-threading with master-thread IO. |
310 |
|
o change default MAX_NO_THREADS from 32 to 4 ; |
311 |
|
and stop cleanly when MAX_NO_THREADS is too small. |
312 |
|
o add S/R BAR_CHECK to check multi-threaded barrier synchronization |
313 |
|
|
314 |
|
checkpoint58m_post |
315 |
|
o add a Non-Hydroatatic test (with 3-D Coriolis, NHMTerms, biharmonic Visc. |
316 |
|
and side-drag) on CS-grid : global_ocean.cs32x15.viscA4 |
317 |
|
o make "tutorial_global_oce_latlon" from standard "global_ocean.90x40x15" exp. |
318 |
|
keep global_ocean.90x40x15 (for AD testing) with former secondary test |
319 |
|
(".qshyd") as the main test (mv output.qshyd.txt to output.txt) |
320 |
|
o CVS modules: update MITgcm_verif_basic; remove MITgcm_verif_ocean & _verif_atmos; |
321 |
|
add MITgcm_tutorials (= code + all the tutorials) |
322 |
|
o ecco, option to compute cost for total ssh (mean+anom) |
323 |
|
o consistent with addition of ptracer and ssh in pkg/profiles |
324 |
|
o profiles: adding ptracer and ssh |
325 |
|
o testreport: change multi-test output-file name |
326 |
|
(from output.txt.{name} to output.{name}.txt) |
327 |
|
o profiles: now ok for mutli-tiles case |
328 |
|
o seaice: add 4 parameters for different advection schemes for area, |
329 |
|
(effective) seaice thickness, enthalphy, and snow height. Their default |
330 |
|
is the standard parameter SEAICEadvScheme |
331 |
|
o calc_gw: |
332 |
|
- add cosFacU in zonal viscous flux (harmonic.visc.). |
333 |
|
- put back side-drag (call new S/R MOM_W_SIDEDRAG) and output.txt. |
334 |
|
of tutorial_plume_on_slope. |
335 |
|
o obcs_calc.F : fix index Pb in OBSeta & OBNeta (Thanks to Gianmaria). |
336 |
|
o calc_gw: true flux-form, account for horizontal grid spacing. |
337 |
|
update rotating_tank results, but not plume_on_slope (affected at |
338 |
|
truncation level, 11 digits). |
339 |
|
|
340 |
|
checkpoint58l_post |
341 |
|
o calc_gw: |
342 |
|
- take bi,bj loops outside calc_gw to fix Pb with local array KappaRU,V |
343 |
|
- remove side-drag for now (need to fix it); update plume_on_slope results. |
344 |
|
- fix for partial-cell & non-uniform dz; update plume_on_slope results. |
345 |
|
o commit code to make SST/SSS weights spatially variable |
346 |
|
(based on either variable in-situ or variable initial T/S weights) |
347 |
|
o pkg/ecco: |
348 |
|
* commit code to relax deviations of xx_theta, xx_salt to 5*sigma, |
349 |
|
now based on horizontally varying weights wthetaLev, wsaltLev |
350 |
|
* cost_averagesflags now returns year indices in addition to day, month |
351 |
|
* sflux balance is performed on annual basis |
352 |
|
(sflxumm, sfluxmm2, bal_sfluxmm) |
353 |
|
* for SSH anomaly, separate more cleanly contrib from T/P, ERS, GFO, |
354 |
|
including separate counting and multipliers |
355 |
|
o pkg/rbcs |
356 |
|
* add all necessary infrastructure for pkg/rbcs levN adjoint checkpointing |
357 |
|
|
358 |
|
checkpoint58k_post |
359 |
|
o testreport: |
360 |
|
- always build in dir. "build" (if not there, mkdir build instead of building |
361 |
|
& running in input) |
362 |
|
- run in dir run (if it exists), in build otherwise. |
363 |
|
- call prepare_run (if input/prepare_run exists) |
364 |
|
- run multi-threaded test (with new option: "-mth") if file input/eedata.mth exists. |
365 |
|
o pkg/exf modifications to interpolation and rotation routines for more |
366 |
|
reasonable treatment of North Pole singularity: for tracers North Pole |
367 |
|
value is set to northernmost zonal-mean value, for zonal velocity it is |
368 |
|
set to zero, and for meridional velocity it is set to northernmost value. |
369 |
|
o pkg/exf/exf_check_range.F |
370 |
|
- add tile index to diagnostics and move stop statement to the very |
371 |
|
end of the routine. |
372 |
|
o pkg/diagnostics: (diagnostics_main_init.F) |
373 |
|
define title of isomorphic variables according to the current config. |
374 |
|
o pkg/thsice with pkg/seaice dynamics: |
375 |
|
- fix domain of computation (interior only, required for exf) and do exchanges |
376 |
|
- seaice-dynamics forcing: add atmospheric and seaice loading to SSH gradient |
377 |
|
o towards a standard way of dealing with multi-threading in MONITOR |
378 |
|
and ${PKG}_MONITOR (all except ptracers_monitor) subroutines. |
379 |
|
o Pass variable viscosities (vertical and horizontal, e.g., KPP or Leith) |
380 |
|
to W momentum equation in nonhydrostatic and quasihydrostatic runs. |
381 |
|
o make exf_monitor & seaice_monitor independant of the main (dynamics) monitor. |
382 |
|
o pkg/seaice: fix SEAICEuseEVPpickup parameter (put it in a commom block) |
383 |
|
o generic_advdiff: DST advection S/R : use local copy of velocity to compute CFL |
384 |
|
(problems ? with gradient check in bottom_ctrl_5x5 adjoint test) |
385 |
|
o tracer advection: |
386 |
|
- clean-up and simplify calc_common_factors.F |
387 |
|
- make a local copy of velocity and pass it (as u,v,r_Trans) to DST tracer |
388 |
|
advection subroutine (but still not used within DST advection S/R) |
389 |
|
o rename pkg aim_ocn_coupler to atm_ocn_coupler (later on, will be used without aim) |
390 |
|
|
391 |
|
checkpoint58j_post |
392 |
|
o new driver S/R: LOAD_FIELDS_DRIVER to load external forcing fields |
393 |
|
from file (collects calls previously in FORWARD_STEP) |
394 |
|
o move call to SEAICE_MODEL from FORWARD_STEP to DO_OCEANIC_PHYS |
395 |
|
o adjoint store dir. adjusted accordingly |
396 |
|
o genmake2 |
397 |
|
replace target "ad_taf" by $(EXE_AD) ; add $(EXE_AD) to the make CLEAN list. |
398 |
|
|
399 |
|
checkpoint58i_post |
400 |
|
o pkg/seaice: add parameter that allows to scale/turn off effect of seaice |
401 |
|
on wind stress (SEAICEstressFactor defaults to 1.) |
402 |
|
o Total number of Timers is finite (<=40): comment out 2 non-essential one |
403 |
|
in the_main_loop.F to avoid Pb (e.g., when running fizhi test) |
404 |
|
o vector_invariant: fix highOrderVorticity(=4.th.Order) advection |
405 |
|
on CS-grid: no longer loosing mass. |
406 |
|
o exf & curvilinear-grid: no longer modify longitude xC & xG. |
407 |
|
o pkg/ggl90: fix sloppy output and fix a bug |
408 |
|
o pkg/seaice: added SEAICEuseEVPpickup parameter |
409 |
|
- Set to false in order to start EVP solver with |
410 |
|
non-EVP pickup files when using SEAICEuseEVP |
411 |
|
- fix sign error in diffusion in seaice_calc_rhs |
412 |
|
|
413 |
|
checkpoint58h_post |
414 |
|
* Modifications for bottom topography control |
415 |
|
o replace hFacC by _hFacC at various places |
416 |
|
o replace ALLOW_HFACC_CONTROL by ALLOW_DEPTH_CONTROL |
417 |
|
o add non-self-adjoint cg2d_nsa |
418 |
|
o update autodiff support routines |
419 |
|
o re-initialise hfac after ctrl_depth_ini |
420 |
|
o works for 5x5 box, doesnt work for global_ocean.90x40x15 |
421 |
|
* Adding verification for 5x5 box (4-layer) bottom topography control |
422 |
|
|
423 |
|
checkpoint58g_post |
424 |
|
o pkg/diagnostics: implement "periodic averaging diagnostics" (e.g., |
425 |
|
used for mean seasonal cycle, mean diurnal cycle); add an example |
426 |
|
in verification/global_ocean.cs32x15/input.thsice/data.diagnostics |
427 |
|
o pkg/ggl90: |
428 |
|
- add parameter (minimum surface kinetic energy) |
429 |
|
- fix bug (avoiding division by zero) |
430 |
|
o couple pkg/thsice to pkg/seaice: |
431 |
|
- modify advection in seaice to accomodate new scalar fields to be advected |
432 |
|
- only muliDimAdection scheme work with seaice/thsice |
433 |
|
- mapping of thsice-variables to seaice-variables, back and forth |
434 |
|
- does not break the verification experiments, but does not give the |
435 |
|
desired results either |
436 |
|
o pkg/seaice |
437 |
|
- make (default) second order advection a bit less confusing? |
438 |
|
|
439 |
|
checkpoint58f_post |
440 |
|
o couple pkg/thsice and pkg/exf (as a preparation for coupling pkg/thsice |
441 |
|
to pkg/seaice): |
442 |
|
- new routines thsice_map_exf and thsice_get_exf provide the interface |
443 |
|
- add an additional formal parameter to thsice_solve4temp |
444 |
|
o pkg/exf: |
445 |
|
- add new fields wspeed, snowprecip (to be able to couple to thsice) |
446 |
|
- correct Stefan-Boltzmann constant |
447 |
|
- new parameter for longwave surface emittance |
448 |
|
- separate some stuff from exf_bulkformulae into new routines |
449 |
|
exf_radiation, exf_wind |
450 |
|
- add new parameters and constants: longwave emissivity for ocean, ice |
451 |
|
and snow, evaporation parameters over ice |
452 |
|
- decouple wind/stress computation from ALLOW_BULKFORMULA: always compute |
453 |
|
either wind from stress or stress from wind |
454 |
|
o pkg/thSIce: |
455 |
|
- split thsice_step_fwd.F in 2 S/R: thsice_step_temp.F & thsice_step_fwd.F |
456 |
|
- put i,j loops inside S/R: THSICE_ALBEDO, THSICE_SOLVE4TEMP, THSICE_EXTEND |
457 |
|
and THSICE_CALC_THICKN |
458 |
|
- for now, call to THSICE_GET_BULKF remains inside i,j loops. |
459 |
|
- add CPP option: ALLOW_DBUG_THSICE and header file THSICE_DEBUG.h |
460 |
|
to make debugging easier. |
461 |
|
- affects results (@ truncation level) of global_ocean.cs32x15.thsice: update output |
462 |
|
o pkg/bulk_force: |
463 |
|
- clean-up comments and parameters ; |
464 |
|
- add new Bulk-Formulae from Large and Yeager, 2004, NCAR/TN-460+STR ; |
465 |
|
o fix bug in aim+thsice albedo: snow & ice thickness arguments were switched; |
466 |
|
generate new output for test-experiment: aim.5l_cs.thSI |
467 |
o results_ad : rename "output.txt_adm" to "output_adm.txt" and change |
o results_ad : rename "output.txt_adm" to "output_adm.txt" and change |
468 |
testreport accordingly |
testreport accordingly |
469 |
|
|
470 |
checkpoint58e_post |
checkpoint58e_post |
471 |
o SEAICE_CGRID adjoint done |
o SEAICE_CGRID adjoint done |