3 |
Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
4 |
============================== |
============================== |
5 |
|
|
6 |
|
|
7 |
|
o bug fix for mom_*_sidedrag: rA -> rAs,rAw |
8 |
|
o regenerated output for global_ocean_ebm (using -ieee) |
9 |
|
o fix mom_common/mom_*_sidedrag.F to recover numeric output prior to creation |
10 |
|
of mom_common/ |
11 |
|
- simple re-arrangement of instructions within computing loop |
12 |
|
checkpoint53d_pre |
13 |
|
|
14 |
|
checkpoint53c_post |
15 |
|
o new version of coupler for AIM+thSIce and Ocean models |
16 |
|
- new fields (SSS,h_MixLayer ...) are exchanged through the coupler |
17 |
|
- land: change Evaporation of snow |
18 |
|
- aim with thSIce: fix bug in snow-precip. |
19 |
|
o changes to calc_gw.F |
20 |
|
- bug fix for w^2 term near the bottom boundary |
21 |
|
- (hopefully) improve the lateral slip boundary condtions for use with |
22 |
|
partial/looped cells |
23 |
|
- because the bug fix changes two verification experiments anyway (exp5 |
24 |
|
and plume on slope), change the lateral boundary condition from half slip |
25 |
|
to the value of no_slip_sides |
26 |
|
o ebm package wasnt quite up to the parallel task. Fixed that. |
27 |
|
o Adjoint of EBM package + verification |
28 |
|
* TLM OK |
29 |
|
* ADM not sufficient accuracy yet (needs further testing) |
30 |
|
|
31 |
|
checkpoint53b_post |
32 |
|
o Commiting new energy balance model to repository |
33 |
|
* package is pkg/ebm |
34 |
|
* verif. is verification/global_ocean_ebm |
35 |
|
* references are in ebm_driver.F |
36 |
|
C * X. Wang, P. Stone and J. Marotzke, 1999: |
37 |
|
C Global thermohaline circulation. Part I: |
38 |
|
C Sensitivity to atmospheric moisture transport. |
39 |
|
C J. Climate 12(1), 71-82 |
40 |
|
C * X. Wang, P. Stone and J. Marotzke, 1999: |
41 |
|
C Global thermohaline circulation. Part II: |
42 |
|
C Sensitivity with interactive transport. |
43 |
|
C J. Climate 12(1), 83-91 |
44 |
|
C * M. Nakamura, P. Stone and J. Marotzke, 1994: |
45 |
|
C Destabilization of the thermohaline circulation |
46 |
|
C by atmospheric eddy transports. |
47 |
|
C J. Climate 7(12), 1870-1882 |
48 |
|
o Will need long integration testing. |
49 |
|
checkpoint53b_pre |
50 |
|
|
51 |
|
o created pkg/mom_common in preparation for variable viscosity code |
52 |
|
o renamed and split ini_mnc_io |
53 |
|
o pkg/land: only liquid water can diffuse or run-off |
54 |
|
o AIM using land: soil wetness availability account for snow |
55 |
|
o added printMapIncludesZeros to EEPARMS namelist |
56 |
|
|
57 |
|
checkpoint53a_post |
58 |
|
o restore TAMC compatiility for exf_constants.h |
59 |
|
(no usage of _d in .h) |
60 |
|
o Additional storing in KPP in an attempt to fix |
61 |
|
TAMC problem with adjoint of KPP code. |
62 |
|
(no success...) |
63 |
|
Identical code works fine with TAF. |
64 |
|
o Fixed verification/natl_box_adjoint experiments. |
65 |
|
Initial conditions for Experiments 4 and 5 are now |
66 |
|
set to "SEAICE_initialHEFF=0", which is more reasonable, |
67 |
|
and hence gives results closer to that of Experiment 2. |
68 |
|
Experiment 6 requires "SEAICE_initialHEFF=1" and is working once again. |
69 |
|
|
70 |
|
checkpoint53 |
71 |
|
o stable checkpoint with up to date adjoint |
72 |
|
TLM tests only run for 1st grdchk at the moment. Its unclear if |
73 |
|
this is a code problem or a problem with resetting code for g_ |
74 |
|
variables that is being autogenerated wrong. |
75 |
|
Otherwise: |
76 |
|
o code is testing well on Linux (P4 and AMD), SGI Alitix and Irix. |
77 |
|
o IBM and HPQ tests could not be run because NCAR (IBM) and NCCS (HPQ) |
78 |
|
are both still in chaos following their security messes. |
79 |
|
|
80 |
|
checkpoint52n_post |
81 |
|
o various build (mostly genmake2) changes including: |
82 |
|
- ability to build/run more easily within Cygwin and MacOS X |
83 |
|
- more complicated Makefiles with a stronger dependence on Gnu Make |
84 |
|
o pkg/seaice modifications |
85 |
|
- added SEAICE_deltaTtherm and SEAICE_deltaTdyn in order to reduce cost |
86 |
|
of pkg/seaice. For time being, SEAICE_deltaTtherm = deltaTtracer |
87 |
|
and SEAICE_deltaTdyn must be integer multiple of SEAICE_deltaTtherm |
88 |
|
- changed proxy for geostrophic velocity and updated |
89 |
|
verification/lab_sea/results/* accordingly |
90 |
|
- removed ADI dynamic solver from pkg/seaice |
91 |
|
- replaced all occurrences of 1/CSTICE or 1/CSUICE |
92 |
|
they caused a segmentation fault under certain circumstances |
93 |
|
- removed unused field WATR |
94 |
|
o bug fix in exf-package: |
95 |
|
- u/vwind are defined at tracer/pressure points. The values of u/vwindmask |
96 |
|
now reflect that. |
97 |
|
o small fixes in the cal-package: |
98 |
|
- set reference date to first of January for the 'model'-calendar |
99 |
|
- failing of cal_CheckDate in cal_FullDate now actually results in a |
100 |
|
warning |
101 |
|
o small modifications in exf-package to increase flexibility: |
102 |
|
- change climtempfreeze from a constant to a runtime parameter that |
103 |
|
is specified in data.exf_clim (default = -1.9) |
104 |
|
- introduce runtime parameter windstressmax (default = 2.0) that is |
105 |
|
specified in data.exf |
106 |
|
o fix in pkg/thsice: |
107 |
|
- update Evap (Tsf changes) to be consistent with Latent heat flux |
108 |
|
- maintain snow precipitation unchanged (even if Tsf >=0). |
109 |
|
both affect global_ocean.cs32x15/(.thsice) results ; update output.txt.thsice |
110 |
|
|
111 |
|
checkpoint52m_post |
112 |
|
o commented out call to cal_GetMonthsRec in swfrac.F and added some comments; |
113 |
|
this does not change any of the results, because myIter=0 in swfrac always |
114 |
|
lead to jwtype=2 (the default anyway), but the call makes little sense |
115 |
|
as a default |
116 |
|
o no SHORTWAVE HEATING lost at the bottom; affects lab_sea output; updated |
117 |
|
o re-work pkg/thsice interface with ocean & bulk_force pkg to allow |
118 |
|
atmospheric model (AIM) to use it ; add a "slab ocean" component. |
119 |
|
o pkg/aim_v23 : add interface to call thermodynamic sea-ice (thsice) |
120 |
|
o update global_ocean.cs32x15/output (.thsice) after changes in pkg/thsice |
121 |
|
o extending useSingleCpuIO option to work with new exch2 I/O format |
122 |
|
- old-style, missing-tile I/O is still accessible by defining CPP |
123 |
|
option MISSING_TILE_IO in pkg/mdsio/MDSIO_OPTIONS.h |
124 |
|
o monitor package can write to NetCDF files and/or STDOUT |
125 |
|
o fix re-definition bug in MNC_GRID_INIT_ALL() |
126 |
|
o doc/api_reference added |
127 |
|
- a framework for building an API Reference Manual using all |
128 |
|
the "protex" comments embedded in the code |
129 |
|
- see pkg/generic_advdiff, pkg/mnc for examples |
130 |
|
o MNC: |
131 |
|
- make myThid the last argument for all subroutines |
132 |
|
- new default for the grid files: NO halos |
133 |
|
- add useMNC and other run-time flags |
134 |
|
- separate per-file-group handling of the unlimited dimension |
135 |
|
- early initialization of MNC w/ flags read at the eeboot stage |
136 |
|
and lookup tables set in initialize_fixed |
137 |
|
- write all MNC output to a freshly-created directory |
138 |
|
o thermodynamics sea-ice (thsice) is now tested with testreport. |
139 |
|
o test exp. advect_cs: use the standard cs32 grid ; update output. |
140 |
|
o Added functionality to grdchk: |
141 |
|
pick global i,j,k position (or nearest wet) where to perform check. |
142 |
|
|
143 |
|
checkpoint52l_post |
144 |
|
o new land formulation: |
145 |
|
a) use ground enthalpy as prognostic variable to ensure exact |
146 |
|
energy conservation. |
147 |
|
b) account for water temperature and for latent heat of freezing |
148 |
|
in all processes (rain, run-off, ground storage) |
149 |
|
c) compute surface and ground temperature implicitly. |
150 |
|
o aim_v23 modification for new land model: |
151 |
|
a) Treat separately land / ocean / sea-ice surface fluxes |
152 |
|
to allow implicit computation of land & sea-ice surface temp. |
153 |
|
b) add snow precipitation. |
154 |
|
checkpoint52l_pre |
155 |
|
|
156 |
|
o fix problem (when 1 tile is empty) in min/max monitor. |
157 |
|
o fix bug in timeAve (u,vZetatave in common block) |
158 |
|
o no restoring terms under ice for pkg/seaice |
159 |
|
o moved SEAICE_DO_DIAGS to S/R do_the_model_io |
160 |
|
o bug fix for pkg/seaice pickups |
161 |
|
o change MNC call locations and add coordinate attributes |
162 |
|
o mask vorticity at the corner ; affects global_ocean.cs output |
163 |
|
o fix ini_curvilinear_grid ; test CS experiments with mpi |
164 |
|
o aim.5l_cs: modify sea-ice fraction input file ; update output |
165 |
|
o exf: Adding simple range check routine for exf fields after read |
166 |
|
|
167 |
|
checkpoint52k_post |
168 |
|
o removed top-level directory "diags" |
169 |
|
- we migrated these functions to pkg/timeave a long time ago |
170 |
|
o fixed bug introduced in pkg/monitor |
171 |
|
o accuracy ctrlprec = 32 insuffient for gradient checks using |
172 |
|
averaged fields (I/O via cost_averages) |
173 |
|
-> use ctrl.h in active_file*.F to control I/O precision. |
174 |
|
o paramter list of CALL ADTHE_MAIN_LOOP |
175 |
|
o added initial do_the_model_io to ecco |
176 |
|
o set all ...Freq to zero after cost_final |
177 |
|
taveFreq, dumpFreq, pChkptFreq |
178 |
|
o MAIN and ECCO differentiability restored |
179 |
|
|
180 |
|
checkpoint52j_post |
181 |
|
o fix nchklev in tamc.h for global_ocean... |
182 |
|
o Bringing flow and store directives up-to-date |
183 |
|
o Really weird thing! |
184 |
|
call do_the_model_io from the_main_loop with parameters |
185 |
|
starttime, niter0, instead of mytime, myiter, screws up the adjoint: |
186 |
|
TAF places a faulty re-call of initialise_varia |
187 |
|
after cost_final call which should not be there! |
188 |
|
checkpoint52j_pre |
189 |
|
|
190 |
|
o tweaked pkg/mdsio/mdsio_readfield.F to have more useful logic and |
191 |
|
error messages |
192 |
|
o fix errorMessageUnit problem. remove old version of mdsio from eesup/src |
193 |
|
o modified pkg/mdsio/mdsio_readfield.F -- commented out diskspace-eating |
194 |
|
debug output |
195 |
|
o modfied mdsio_writefield.F to handle non-global files under exch2 |
196 |
|
o update AIM Cubed-Sphere exp (aim.5l_cs): |
197 |
|
use land, p*, and Franco.M forcing fields with fractional land-sea mask. |
198 |
|
o update AIM Equatorial Channel exp: |
199 |
|
use standard aim_v23 pkg and change the SST fields to be more realistic. |
200 |
|
o globalFile now works with exch2 |
201 |
|
o merged mom_vi_calc_relvort3.F, mom_vi_del2uv.F and |
202 |
|
mon_vort3.F to make exch2 friendly with >1 tile per cube face |
203 |
|
o limit timeave output for hi-res integrations |
204 |
|
|
205 |
|
checkpoint52i_post |
206 |
|
o removed CPP_EEOPTIONS.h from verification/*/code |
207 |
|
o updated the tiling for global_ocean_pressure |
208 |
|
checkpoint52i_pre |
209 |
|
|
210 |
|
o update aim.5l_LatLon using the standard aim_v23 pkg (instead of |
211 |
|
the old pkg/aim). |
212 |
|
|
213 |
|
checkpoint52h_pre |
214 |
|
o shortened offending lines in exch2_send_rx?.template |
215 |
|
o modified W2_EXCH2_TOPOLOGY.h to reflect current topology generator |
216 |
|
o genmake2: add build & execute test for NetCDF code |
217 |
|
o modded aim.5l_cs and global_ocean.cs32x15 to use exch2, removed |
218 |
|
old grid files, moved CPP_EEMACROS.h to pkg/exch2 |
219 |
|
o added useSingleCPUIO flag to monitor.F and mon_out.F |
220 |
|
o added temporary hack for sea-ice dynamics on the cube: |
221 |
|
metric terms are ignored and it is assumed that |
222 |
|
there is no sea-ice on cube faces 1, 2, 4, and 5. |
223 |
|
|
224 |
|
checkpoint52f_post |
225 |
|
o added exch2 cube routines to pkg/exch2 |
226 |
|
o modified hs94.cs-32x32x5 to use it |
227 |
|
o added new grid files to hs94.cs-32x32x5 |
228 |
|
checkpoint52f_pre |
229 |
|
|
230 |
|
checkpoint52e_post |
231 |
|
o first attempt to solve vertical advection (momemtum & T,S) Implicitly |
232 |
|
for now, only implemented with Lax-Wendroff (tracer) and VectInv (mom) |
233 |
|
o step.1 : rewrite (as in MultiDimAdvec) explicit tracer stepping (gad_calc_rhs.F) |
234 |
|
to work with implicit vertical advection and AB ; |
235 |
|
o Implic. vert. advect. implemented with flux-limiter, c2, u3 and c4 scheme. |
236 |
|
o update output (gad_calc_rhs.F changes affect truncation error) of exp: |
237 |
|
front_relax, global_ocean .cs32x15 & _pressure, internal_wave, lab_sea, natl_box |
238 |
|
checkpoint52e_pre |
239 |
|
|
240 |
|
o fix bug in impldiff when Nr=1 or Nr=2. |
241 |
|
o change the albedo in pkg/thsice (as GISS model); update output_thsice.txt |
242 |
|
o little changes (fftpack, aim/phy_suflux ...) to pass the "checkbounds" test. |
243 |
o fix deltaTfreesurf in update_cg2d.F (left from c45d_post): affects 2 |
o fix deltaTfreesurf in update_cg2d.F (left from c45d_post): affects 2 |
244 |
ocean exp. that use NLFS: global_ocean.cs32x15 & global_ocean_pressure |
ocean exp. that use NLFS: global_ocean.cs32x15 & global_ocean_pressure |
245 |
o added exf_offset_atemp for Celsius to Kelvin conversion of atemp |
o added exf_offset_atemp for Celsius to Kelvin conversion of atemp |