4 |
Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
5 |
============================== |
============================== |
6 |
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|
7 |
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o pkg/cost: |
8 |
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- define a "final cost function" for each tile, and use GLOBAL_SUM_TILE_RL |
9 |
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(instead of _GLOBAL_SUM_RL) to get the final cost from all procs & threads: |
10 |
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o this fixes global-sum value if multi-threads (since GLOBAL_SUM_TILE_RL |
11 |
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cannot be applied to var in common block). |
12 |
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o allows to get results independent of tile-per-proc setting (if using |
13 |
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slower GLOBAL_SUM_SEND_RECV option). |
14 |
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- update accordingly: seaice_cost_final.F, shelfice_cost_final.F, |
15 |
|
thsice_cost_final.F and ecco_cost_final.F (this one affects lab_sea |
16 |
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forward gradients: update output). |
17 |
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- update */code_oad/externalDummies.F by adding dummy GLOBAL_SUM_TILE_RL |
18 |
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S/R and, for most exp., also comment out GLOBAL_SUM_R8. |
19 |
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o pkg/mom_common: |
20 |
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- move to pkg/mom_common and model/src (previously in tutorial_deep_convection |
21 |
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code) 2nd version of isotropic 3-D Smagorinsky code interface: strain and |
22 |
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viscosity are locally declared in dynmics.F and pass as argument to CALC_GW; |
23 |
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ensure that all field value that are used are set. |
24 |
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o tutorial_deep_convection (smag3d): |
25 |
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- add missing scaling in mom_calc_smag_3d.F; |
26 |
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- set smag3D_coeff in input.smag3d such that results do not change. |
27 |
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o pkg/dic: |
28 |
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- change dic_cost.F to compute cost on each tile first and then apply |
29 |
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GLOBAL_SUM_TILE_RL: this affects forward gradient of AD experiments |
30 |
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tutorial_dic_adjoffline & tutorial_global_oce_biogeo; update output. |
31 |
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o eesupp/src & pkg/mdsio: |
32 |
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- remove gather/scatter_vector.F (from eesupp) and mdsio_read/writevector.F |
33 |
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(from pkg/mdsio) since they are no longer used for tape IO. |
34 |
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- move simple C subroutine "setdir.c" from pkg/compon_communic to eesupp/src |
35 |
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(+ keep a copy in pkg/atm_ocn_coupler). |
36 |
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o verification/isomip: |
37 |
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- split domain in 8 squared tiles (instead of just 2) for FWD, AD & OAD tests. |
38 |
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o tools/build_options: |
39 |
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- optfile linux_amd64_ifort11, fast (no ieee) case: |
40 |
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to get a working restart for all experiments, add "-fp-model source" |
41 |
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to FOPTIM (also remove "-opt-streaming-stores auto" <- this is the default). |
42 |
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|
43 |
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checkpoint64p (2013/10/20) |
44 |
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o pkg/autodiff: |
45 |
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- adread_adwrite.F: when type and length do not match ALLOW_AUTODIFF_WHTAPEIO |
46 |
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criteria, return to simple (default) tape IO format. |
47 |
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o pkg/mdsio (+ eesupp/src): |
48 |
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- rewrite/simplify tape-IO S/R (new S/R MDS_READ/WRITE_TAPE replace |
49 |
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previous MDSREAD/WRITEVECTOR) with 2 array argument from each type (R4/R8); |
50 |
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- fix globalFile and singleCpuIO options using simpler global mapping. |
51 |
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- new pairs of scatter/gather vector S/R (one for each type, generated from |
52 |
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template) corresponding to simpler global mapping. |
53 |
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- adread_write.F: switch to new S/R (but leave old calls commented) and write |
54 |
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to globalFile when parameter globalFiles is set to True. |
55 |
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- switch on useSingleCpuIO in AD experiments: global_ocean.90x40x15 & isomip. |
56 |
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o pkg/autodiff: |
57 |
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- adread_adwrite.F: add a hack for RS arrays (when RS=real*4); |
58 |
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with ALLOW_AUTODIFF_WHTAPEIO defined, since corresponding (real*4) is |
59 |
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missing, just add a STOP if array type do not match. |
60 |
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o pkg/exf: |
61 |
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- to allow to use seaice-fraction from pkg/exf in other pkgs than pkg/seaice: |
62 |
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rename CPP option EXF_ALLOW_SEAICE_RELAX to EXF_SEAICE_FRACTION |
63 |
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and rename array obsSIce to exf_iceFraction. |
64 |
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o tutorial_deep_convection: |
65 |
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- add 1rst version of isotropic 3-D Smagorinsky code (from Louis-Philippe), |
66 |
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for now all in this exp. code dir. |
67 |
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- add secondary test using Smag-3D viscosity (keep very low backgroud visc for |
68 |
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testing) and flux-limter advection scheme for Temp. (no explicit diffusion). |
69 |
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o eesupp/src: |
70 |
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- added SINGLE_DISK_IO option because reading of parameter files on |
71 |
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very large number of processors did not work with existing set-up |
72 |
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|
73 |
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checkpoint64o (2013/09/25) |
74 |
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o pkg/atm_phys & atm_compon_interf: |
75 |
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- allows for coupling of gray-atmosphere (atm_phys) with ocean. |
76 |
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o tools/build_options: |
77 |
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- switch from "-fPIC" to "-mcmodel=medium" in optfiles: linux_amd64_gfortran |
78 |
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& linux_amd64_ifort11 and in linux_amd64_g77 & linux_amd64_open64 also |
79 |
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remove CPP setting (was identical to genmake2 default). |
80 |
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o pkg/gmredi & model/src: Some updating and work done on the residual model. |
81 |
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- created new file model/src/calc_eddy_stress.F to calculate the eddy stress. |
82 |
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- fixed up the calculation of the eddy stress and how it is added to the |
83 |
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external forcing via taueddy_external_forcing.F |
84 |
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- at the moment, it is very experimental and only works with the variable eddy |
85 |
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diffusivity calculated in gmredi_k3d.F |
86 |
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o pkg/seaice/seaice_check.F: add a check to catch the case of specifying |
87 |
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lw/swfluxfile instead of lw/swdownfile in data.exf together with pkg/seaice |
88 |
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o testreport (& tools/do_tst_2+2): |
89 |
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- for MPI test, set default COMMAND to 'mpirun -v -np TR_NPROC ./{executable}' |
90 |
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o tools/build_options: linux_amd64_gfortran & linux_amd64_ifort11: |
91 |
|
- remove CPP='cpp -traditional -P' (this is genmake2 default) |
92 |
|
- add switch (for big setups) to use 'medium' memory-model (but leave it |
93 |
|
commented out for now). Note: needed with FC 19 to compile big setups. |
94 |
|
o pkg/atm_compon_interf: |
95 |
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- regroup per field origin (model & pkgs) the coupling storage routines |
96 |
|
(which accumalate in time each coupling field) |
97 |
|
- move bi,bj loops inside atm_store_my_data.F and store also wind-stress; |
98 |
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update accordingly + simplify aim_do_physics.F |
99 |
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|
100 |
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checkpoint64n (2013/08/26) |
101 |
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o pkg/bbl: |
102 |
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- update formulation to reduce dispersion of tracer properties in bbl |
103 |
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- replaced horizontal and vertical transport parameters with velocities |
104 |
|
- changes results for verification/global_with_exf.yearly |
105 |
|
o verification/halfpipe_streamice: |
106 |
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- change to matrix construction; update both Fwd & AD output. |
107 |
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o verification/tutorial_tracer_adjsens: |
108 |
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- OpenAD test: switch to vector-invariant momentum since fluxform with |
109 |
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rStar causes problems with OpenAD; update output. |
110 |
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o tools: |
111 |
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- genmake2: define a common prefix for all temp-file names ; move them |
112 |
|
to local /tmp disk (but would be easy to move them back); |
113 |
|
- xmakedepend: apply the same switch for temp-files. |
114 |
|
o pkg/offline: |
115 |
|
- changes for use with rStar (NLFS): assume that we continue to provide |
116 |
|
UVELMASS/hFacW_ini & VVELMASS/hFacS_ini (hFacWi,S_ini as written in grid |
117 |
|
output files) and apply r* scaling at each time-step (function of the time |
118 |
|
varying Eta field); use normal pickup files (needed for restart with NLFS). |
119 |
|
o adjoint with OpenAD: |
120 |
|
- move OpenAD-specific files from verification/OpenAD/code_oad_all to a new |
121 |
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package openad. This package has to be compiled for all runs with OpenAD |
122 |
|
instead of specifying code_oad_all as a modification directory. |
123 |
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- link the fortran templates from tools/OAD_support to the build directory |
124 |
|
for preprocessing to avoid conflicts between different setups compiled |
125 |
|
simultaneously and simplify cleanup. |
126 |
|
o pkg/exf: |
127 |
|
- in exf_getforcing.F: comment out most of the EXCH calls (fields used by |
128 |
|
main model or other pkgs are exchanged in EXF_MAPFIELDS). |
129 |
|
o model/src: |
130 |
|
- do_stagger_fields_exchanges.F: skip EXCH calls when using pkg/offline |
131 |
|
(similar to do_fields_blocking_exchanges.F). |
132 |
|
o tools/genmake2: |
133 |
|
- remove TAF output src code just before calling staf (when not doing a fresh |
134 |
|
built, will stop if things go wrong with staf). |
135 |
|
- fix target "adobj" (left from TAF version-2 transition) |
136 |
|
o pkg/diagnostics: |
137 |
|
- add a parameter to track the status of pkg/diagnostics activation; |
138 |
|
this replace/extend the use of logical param "settingDiags" (to check |
139 |
|
when adding diag to the list) to also check any DIAGNOSTICS_[]FILL* call. |
140 |
|
New S/R to print error message and stop when pkgStatus is not right. |
141 |
|
- to try: add a warning when "data.diagnostics" exist but useDiagnostics=F. |
142 |
|
|
143 |
|
checkpoint64m (2013/08/13) |
144 |
|
o model/inc: |
145 |
|
- move FCORI_MACROS.h from PARAMS(_MACROS).h to GRID_MACROS.h (left from |
146 |
|
8 yrs ago modif when Coriolis arrays were moved from PARAMS.h to GRID.h) |
147 |
|
o pkg/kpp & aim_v23: |
148 |
|
- only call DIAGNOSTICS_FILL when useDiagnostics=TRUE. |
149 |
|
o pkg/seaice: |
150 |
|
- restore (last time on 2011/12/24) ability to compile pkg/seaice with |
151 |
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undefined pkg/exf ALLOW_ATM_TEMP or ALLOW_RUNOFF CPP-options. |
152 |
|
- only call DIAGNOSTICS_FILL when useDiagnostics=TRUE. |
153 |
|
o eesupp/src: |
154 |
|
- fix check for overlap-size argument (myOLn.GT.MAX_OLY_EXCH) |
155 |
|
in exch1_rx[_ad].template (thanks to Francois Lefeuvre report). |
156 |
|
o switch to TAF version-2: |
157 |
|
- add flow directives to "freeze" naming convention for ad-routines that |
158 |
|
are used in I/O routines of adjoint state and associated common blocks |
159 |
|
that are used in adcommon.h (backward compatible with version-1) |
160 |
|
- update all ad-optfiles (in tools/adjoint_options + few local to some |
161 |
|
verification exp) to switch to latest TAF version (currently 2.5.5); |
162 |
|
merge "*_mpi" adoptfiles into the corresponding non-mpi (but commented |
163 |
|
out except for diva). |
164 |
|
- the major change with TAF version-2 is that both the differentiated |
165 |
|
routines and the forward routines (new) are returned as part of the TAF |
166 |
|
output source code. Update genmake2 accordingly. |
167 |
|
- new output for AD experiment tutorial_global_oce_biogeo (better AD gradient |
168 |
|
with version-2 when compared to TLM or FWD gradient); other experiments |
169 |
|
output show minor changes (machine truncation level); update the few AD & |
170 |
|
TLM output with 12 matching digits only (some prior to version-2 switch). |
171 |
|
|
172 |
|
checkpoint64l (2013/08/05) |
173 |
|
o model/src: |
174 |
|
- in dynamics.F, skip the call to CALC_VISCOSITY if momViscosity=F |
175 |
|
- main_do_loop.F: no longer includes additional (AUTODIFF) header files |
176 |
|
when using TAF but only if using OpenAD. |
177 |
|
o pkg/mom_common+fluxform+vecinv: |
178 |
|
- always set horiz. viscosity arrays to background value before calling |
179 |
|
MOM_CALC_VISC (in MOM_FLUXFORM & MOM_VECINV) and call S/R MOM_CALC_VISC |
180 |
|
only when using variable horiz. viscosity (useVariableVisc=T); |
181 |
|
- simplify mom_vecinv.F (only 1 block for momViscosity). |
182 |
|
o pkg/mom_common: variable horiz. viscosity in NH code |
183 |
|
- move horiz-viscosity 3-D arrays viscAh_W & viscA4_W (used in calc_gw.F) |
184 |
|
from model/inc/NH_VARS.h to pkg/mom_common/MOM_VISC.h |
185 |
|
- store in common block (in MOM_VISC.h) logical parameters: useHarmonicVisc, |
186 |
|
useBiharmonicVisc & useVariableVisc. |
187 |
|
- fix old bug (already in 1rst implementation of variable horizontal viscosity |
188 |
|
in calc_gw.F, version 1.27, 2006/06/20): |
189 |
|
horizontal bi-harmonic viscosity in gW was missing when wiscA4W=0 |
190 |
|
even if variable bi-harmonic viscosity (e.g., viscA4Grid) was non-zero. |
191 |
|
- change background horiz viscosity in vertical momentum (gW) to always be |
192 |
|
viscAhW,viscA4W (instead of switching to viscAhD, viscA4D when using |
193 |
|
any type of variable viscosity, e.g., viscAh/4Grid) |
194 |
|
- change default value of viscAhW,viscA4W to viscAhD,viscA4D (instead of |
195 |
|
viscAh,viscA4) which default to viscAh,viscA4 : this avoid missing |
196 |
|
horiz. viscosity in W eq when just setting viscAhD/Z,viscA4D/Z (since |
197 |
|
default viscAh,viscA4 is zero). |
198 |
|
o model/src: |
199 |
|
- extend length of drC & recip_drC from Nr to Nr+1. |
200 |
|
o Divided Adjoint (DIVA) with MPI: |
201 |
|
- genmake2: do not create local ./mpi_headers dir when no file to copy into. |
202 |
|
- remove option ALLOW_DIVIDED_ADJOINT_MPI (replaced by ALLOW_DIVIDED_ADJOINT |
203 |
|
and ALLOW_USE_MPI) from model/src code and from ECCO_CPPOPTIONS.h. |
204 |
|
|
205 |
|
checkpoint64k (2013/07/23) |
206 |
|
o tools/OAD_support: |
207 |
|
- avoid the need for file "oadtempflile" in insertTemplateDir.bash |
208 |
|
and remove it from genmake2. |
209 |
|
o tools/build_options: |
210 |
|
- remove MPI_HEADER_FILES_INC setting (no longer used) and comment out |
211 |
|
MPI_HEADER_FILES list (let genmake2 find the missing headers) |
212 |
|
o verification/halfpipe_streamice: |
213 |
|
- change to driving stress formulation; update both Fwd & AD output. |
214 |
|
o tools/genmake2 and Divided Adjoint with MPI: |
215 |
|
- remove default setting of MPIINCLUDEDIR from $MPIHOME (always been broken); |
216 |
|
- only create local ./mpi_headers dir if using MPI and MPIINCLUDEDIR is set; |
217 |
|
- add new variable (LOCAL_MPI_HEADERS, replace MPI_HEADER_FILES_INC) in |
218 |
|
Makefile, which is set by genmake2, and check which mpi-headers are needed. |
219 |
|
Note: need to update adjoint_options/adjoint_diva_mpi accordingly. |
220 |
|
- update target "CLEAN" (to also remove ./mpi_headers/ dir). |
221 |
|
o testreport: |
222 |
|
- changes for Divided Adjoint Run: when file "run_ADM_DIVA" is present, |
223 |
|
perform additional runs (number of additional runs is "add_DIVA_runs" taken |
224 |
|
from file run_ADM_DIVA ; should match "nchklev_3" in file "code_ad/tamc.h"). |
225 |
|
o verification/lab_sea (AD test): |
226 |
|
- change to test Divided Adjoint Run in this set-up (both standard AD test |
227 |
|
and 2 secondary AD test: noseaice + noseaicedyn); drop the evp AD test. |
228 |
|
o pkg atm_ & ocn_compon_interf: |
229 |
|
- remove cpl_earlyExpImpCall=F option (was mainly a hack added for the old |
230 |
|
staggerTimeStep implementation) and disable (retired) corresponding |
231 |
|
parameter. |
232 |
|
o pkg/offline: |
233 |
|
- comment out unused field-array: ICEM, ConvectCount, hflx[01], icem[01]; |
234 |
|
- add S/R OFFLINE_CHECK to print offline parameter summary |
235 |
|
and stop if loading a file that is not used; |
236 |
|
- enable to calculate GMRedi tensor, KPP mixing and convective index |
237 |
|
when the corresponding file(s) is/are not specified (but pkg is used). |
238 |
|
- comment out resetting of monitorFreq (to endTime) since it still useful |
239 |
|
for monitoring CFL numbers and checking offline fields. |
240 |
|
o OpenAD: |
241 |
|
- do not define OAD_DEBUG (in tools/adjoint_options/adjoint_oad) to get |
242 |
|
smaller standard output) and generate new (smaller) output (on baudelaire |
243 |
|
using gfortran with -ieee) for exp. tutorial_tracer_adjsens |
244 |
|
o model/src: |
245 |
|
- call EXTERNAL_FORCING_SURF outside bi,bj loops (in do_oceanic_phys.F), |
246 |
|
(where external_forcing_adjust was called) and change list of arguments; |
247 |
|
- merge external_forcing_adjust.F into external_forcing_surf.F |
248 |
|
- put surface relaxation of SST & SSS in new S/R (forcing_surf_relax.F) |
249 |
|
which also contains balancing surface relaxation (ALLOW_BALANCE_RELAX, |
250 |
|
previously in file "balance_relax.F", now removed); remove corresponding |
251 |
|
arrays in FFIELDS.h. |
252 |
|
- EXTERNAL_FORCING_SURF is now called when using pkg/offline; implement |
253 |
|
a hack for getting back surfaceForcingS (loaded from file) when using |
254 |
|
ALLOW_OLD_VIRTUALFLUX (pkg/dic, in DIC_OPTIONS.h) in offline set-up. |
255 |
|
- update output of AD test experiment global_ocean.cs32x15.seaice_dynmix |
256 |
|
(was getting only 11 digits for AD-grad, due to different truncation |
257 |
|
error in AD code). |
258 |
|
|
259 |
|
checkpoint64j (2013/07/04) |
260 |
|
o pkg/offline: |
261 |
|
- to enable the use of other features with pkg offline (e.g., obcs), |
262 |
|
also call S/R DO_OCEANIC_PHYS in offline run - more modifs to come. |
263 |
|
- comment out "allowFreezing" (now active) in 2 offline testing exp. |
264 |
|
o pkg/exf ALLOW_RUNOFTEMP |
265 |
|
- fix sign and make compatible with temp_EvPrRn .NE. UNSET_RL |
266 |
|
- ahdded RUNOFTEMP test to verification/global_ocean.cs32x15/input.seaice |
267 |
|
- changes verification/global_ocean.cs32x15/results/output.seaice.txt |
268 |
|
o pkg/atm_phys: |
269 |
|
- allows to add some damping on uVel,vVel (strength only function of k). |
270 |
|
o verification, ad-tests: |
271 |
|
- reduce length of the simulation for AD test: global_ocean.cs32x15.seaice, |
272 |
|
global_ocean_ebm and offline_exf_seaice.thsice. |
273 |
|
o verification/halfpipe_streamice: |
274 |
|
- found a bug in s/r pkg/streamice/streamice_advect_thickness which caused |
275 |
|
flux input boundary conditions to be ignored; a fix for this bug changed |
276 |
|
verification results for forward test. |
277 |
|
- add adjoint test. |
278 |
|
o pkg/ptracers: |
279 |
|
- allow to restart without SOM pickup (resetting SOM to zero). |
280 |
|
o pkg/gmredi: |
281 |
|
- New parameterisation for the calculation of K and (GM_PsiX,GM_PsiY) added. |
282 |
|
- It uses mixing length theory and suppression by steering level effects to |
283 |
|
calculate a diffusivity used in the Redi tensor (see Bates et al., submitted |
284 |
|
to JPO, for more details). |
285 |
|
- It also uses the diffusivity to calculate an eddy induced streamfunction |
286 |
|
based on a PV closure (rather than a buoyancy closure as in GM). |
287 |
|
- New files added to pkg/gmredi: |
288 |
|
gmredi_k3d.F calculates the diffusivity for the Redi tensor and the eddy |
289 |
|
induced overturning streamfunction (called from gmredi_calc_tensor) |
290 |
|
gmredi_calc_eigs.F calculates the eigenvalues and eigenvectors required |
291 |
|
for use in gmredi_k3d |
292 |
|
gmredi_calc_urms.F calculates the the rms eddy velocity used to calculate |
293 |
|
the eddy diffusivity |
294 |
|
|
295 |
|
checkpoint64i (2013/06/18) |
296 |
|
o pkg/cheapaml: |
297 |
|
- take src files from MITgcm_contrib/verification_other/offline_cheapaml/code |
298 |
|
that enable the use of seaice (pkg/thsice thermo & pkg/seaice dynamics) |
299 |
|
with pkg/cheapaml. |
300 |
|
o utils/python: add subpackage for cubed sphere function, first example is |
301 |
|
simple cs.pcol to plot 2D fields on a map |
302 |
|
o pkg/streamice: |
303 |
|
- This is a new package in MITgcm, which solves dynamic equations for ice |
304 |
|
sheets and ice streams |
305 |
|
- At the moment it is independent of atmosphere/ocean dynamics, or any |
306 |
|
other physical packages in MITgcm, even ShelfIce (although it is anticipat- |
307 |
|
ed that this will change) |
308 |
|
- There is a new verification exercise that tests it, halfpipe_streamice, |
309 |
|
evolves a 40x80 km ice stream/ice shelf (at coarse resolution) in a |
310 |
|
rectangular embayment |
311 |
|
- halfpipe_streamice is forward-only for now, will have TAF test soon |
312 |
|
- for questions, email dgoldber@mit.edu |
313 |
|
o pkg/thsice: |
314 |
|
- fix filling of snow-precip diagnostic (SIsnwPrc) (left from the removing |
315 |
|
of snowPrc from common bloc, on May 2nd, thsice_step_fwd.F revision 1.40); |
316 |
|
- remove diagnostics 'SI_FrcFx' ( now identical to 'SI_Fract' with new |
317 |
|
call sequence: ice-Thermo(thsice),ice-Dyn,ice-Advect ); |
318 |
|
- allow precip from pkg/cheapaml to make snow over seaice. |
319 |
|
o pkg/cfc: |
320 |
|
- move in separated header file (CFC_ATMOS.h) time-serie arrays of Atmos CFC |
321 |
|
- remove atmos CFC 2-D arrays from common bloc (now local variables) |
322 |
|
- change some hard-coded constant to run time parameter for reading and |
323 |
|
and interpolating atmospheric CFC ; keep same default as previously. |
324 |
|
- more flexible reading of Atmos CFC (number of records no longer hard-coded) |
325 |
|
- put arguments in standard order: myTime, myIter, myThid |
326 |
|
- use standard S/R GET_PERIODIC_INTERVAL for time interpolation of |
327 |
|
atmospheric CFC ; fix for the case myIter < PTRACERS_iter0. |
328 |
|
- fix calculation of surf tendencys for partial-cell and/or Non-Lin Free-Surf |
329 |
|
- new routine to print summary of CFC params and check for consistency. |
330 |
|
o pkg/seaice: add uice/vice to the parameter list of s/r seaice_advdiff, |
331 |
|
similar to thsice_advdiff. |
332 |
|
Note that for the B-grid case the routine parameters uc/vc are overwritten. |
333 |
|
o pkg/cfc: |
334 |
|
- change time interpolation for atmospheric CFC-11 (now same as for CFC-12); |
335 |
|
update output (CFC-11) of experiment cfc_example and tutorial_cfc_offline. |
336 |
|
- fix interpolation of atmphspheric CFC between Sorthern and Northern |
337 |
|
hemisphere value. |
338 |
|
o pkg/seaice: |
339 |
|
- allow to use seaice dynamics without pkg/exf (e.g., using pkg/cheapaml) |
340 |
|
o pkg/seaice: add Adams-Bashforth2 time discretization for ice dynamics; |
341 |
|
so far only for JFNK-solver, turn on with SEAICEuseAB2 = .TRUE. |
342 |
|
- requires an additional time level that is stored in the pickup |
343 |
|
- you can start with AB2 from a pickup without this time level with |
344 |
|
pickupStrictlyMatch = .false. |
345 |
|
|
346 |
|
checkpoint64h (2013/05/26) |
347 |
|
o pkg/cheapaml: |
348 |
|
- replace one ()**.5 with SQRT + use temp var "cdu = tau/Du" (coare3_flux); |
349 |
|
affect machine truncation (but exp cheapAML_box still pass with 13 digits). |
350 |
|
- consistent treatment of uWind,vWind location: assume everywhere in |
351 |
|
pkg/cheapaml that they are on C-grid (@ uVel,vVel location) |
352 |
|
(Note: was already the case for Tair,Qair advection); |
353 |
|
add option (INCONSISTENT_WIND_LOCATION) to recover old results. |
354 |
|
- compute diabatic forcing only in the interior (excluding overlap regions) |
355 |
|
- fill in array "Qsw" (for short-wave heating); |
356 |
|
- add diagnostic for precip ; fill-in diagnostics for cheapAML state vars |
357 |
|
before any update (consistent with MITgcm state var diagnostics); |
358 |
|
- cheapaml_fields_load.F & cheapaml_init_varia.F : only fill outer edges if |
359 |
|
non periodic ; + adjusted for uWind,vWind (C-grid). |
360 |
|
o pkg/seaice: |
361 |
|
- remove dependence of pkg/seaice versus pkg/exf (file: pkg/pkg_depend) and |
362 |
|
add explicitly pkg/exf in experiments that currently use pkg/seaice. |
363 |
|
- allows to compile pkg/seaice without pkg/exf. |
364 |
|
o tools/OAD_support: |
365 |
|
- use a local copy (ourRWCPinBd) to ensure index ourRWCP stays within bounds |
366 |
|
of array "ourStepOf" in function rvNextAction (revolve.F90). |
367 |
|
o pkg/aim_compon_interf renamed to pkg/atm_compon_interf |
368 |
|
- change pkg name (to be used with other atmospheric physics pkg) |
369 |
|
but by-pass CVS when making the new pkg so that we keep the CVS history. |
370 |
|
o pkg/offline: |
371 |
|
- call OFFLINE_FIELDS_LOAD from pkg/offline/offline_init_varia.F |
372 |
|
(previously called from pkg/dic_surfforcing_init.F) |
373 |
|
o model/src: |
374 |
|
- re-order sequence of calls within packages_init_variables.F, using |
375 |
|
standard order, except for: |
376 |
|
DIAGNOSTICS_INIT_VARIA and OFFLINE_INIT_VARIA (called @ the top), |
377 |
|
CTRL_MAP_INI and OBCS_INIT_VARIABLES (called @ the bottom) |
378 |
|
o new pkg: atm_phys |
379 |
|
- add entry point and source code (previously in contrib |
380 |
|
verification_other/atm_gray/code_gray/) for new pkg "atm_phys" |
381 |
|
(atmospheric physics pkg from P. O'Gorman and T. Schneider, JCl, 2008). |
382 |
|
- re-order sequence of calls within packages_readparms.F, |
383 |
|
packages_init_fixed.F and packages_write_pickup.F |
384 |
|
(but skip packages_init_variables.F because of TAF issues). |
385 |
|
- update contrib/*/atm_gray/ experiment. |
386 |
|
o pkg/seaice (ITD code): |
387 |
|
- simplify and fix the writing of pickup-files for ITD case |
388 |
|
o pkg/seaice (ITD code): |
389 |
|
- introduce floe size dependent lateral melt for ITD case; |
390 |
|
- cleaning (avoid division by zero, change to f77 syntax, remove tabs) |
391 |
|
- update seaice_itd experiment main output. |
392 |
|
o pkg/thsice: |
393 |
|
- remove snowPrc from common block THSICE_FLUX, in THSICE_VARS.h and |
394 |
|
declared it locally (without bi,bj) in thsice_main.F & aim_do_physics.F; |
395 |
|
changed accordingly pkg/atm2d. |
396 |
|
|
397 |
|
checkpoint64g (2013/05/01) |
398 |
|
o pkg/exf ALLOW_RUNOFTEMP |
399 |
|
- if defined, river and glacier runoff temperature can be read-in from |
400 |
|
runoftempfile; runoftempfile needs to have same format as runofffile |
401 |
|
o pkg/thsice (& pkg/bulk_force): |
402 |
|
- In case Energy-Reference-Level (ERL) is used (temp_EvPrRn=0), account |
403 |
|
for energy content of Precip + RunOff & Evap (like with pkg/exf). |
404 |
|
- change computation domain to always be the interior (without overlap). |
405 |
|
- fix bug (wrong overlap) when using EXF and stressReduction > 0. |
406 |
|
o verification/tutorial_global_oce_biogeo: |
407 |
|
- add preliminary OpenAD setup (still has problems) |
408 |
|
o pkg/seaice: |
409 |
|
- turn some parameters for choosing the convergence criterion of |
410 |
|
the inexact Newton method (JFNK) into runtime parameters for convenience |
411 |
|
- clean up seaice_calc_viscosities.F: remove/retire two options for |
412 |
|
SEAICetaZmethod (1,2), introduce area weighting for method 3; this changes |
413 |
|
the results of lab_sea/input because a division has been replaced by |
414 |
|
a multiplication with the reciprocal (sumNorm) |
415 |
|
- modify offline_exf_seaice/input.dyn_jfnk/data.seaice to improve |
416 |
|
convergence of solver (changes results, of course), and to test some |
417 |
|
new features |
418 |
|
o model/src: |
419 |
|
- remove unused (since Aug 2006) S/R SET_WRITE_GLOBAL_PICKUP and its call. |
420 |
|
- remove unused forcing field "dQdT" and associated parameter "dQdTFile". |
421 |
|
- move forcing adjustment (balancing surface forcing) in specific S/R |
422 |
|
where might also be applied exchanges (if needed) to forcing arrays. |
423 |
o pkg/shelfice: |
o pkg/shelfice: |
424 |
- allow to specify the Ice-Shelf mass per unit area (instead of |
- allow to specify the Ice-Shelf mass per unit area (instead of |
425 |
shelficeLoadAnomaly) and do the conversion from one to the other |
shelficeLoadAnomaly) and do the conversion from one to the other |