4 |
Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
5 |
============================== |
============================== |
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o pkg/autodiff: |
8 |
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- improve pkg-internal logical parameter switch (inAd/inFwd mode) so that |
9 |
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autodiff_readparms.F no longer depends on calling order (within |
10 |
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packages_readparms.F) and no longer requires to include ${PKG}_PARMS.h): |
11 |
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rename param turnFreeDriftInAdMode to SEAICEuseFREEDRIFTswitchInAd |
12 |
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and change param SEAICEuseDYNAMICSinAdMode to SEAICEuseDYNAMICSswitchInAd. |
13 |
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o pkg/obcs: |
14 |
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- adding tidal velocity forcing capability to obcs |
15 |
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for usage example, see verification/seaice_obcs/input.tides |
16 |
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o pkg/seaice: |
17 |
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- turn the LSR-relaxation parameters WFAU/V into runtime parameters |
18 |
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SEAICE_LSRrelaxU/V |
19 |
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- introduce runtime parameter SEAICEetaZmethod (=0 by default) |
20 |
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o pkg/aim_v23: |
21 |
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- implement heating from friction (bottom friction and stratospheric drag). |
22 |
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o pkg/shap_filt: |
23 |
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- fix diagnostic "SHAP_dKE" (was 2 time smaller); implement heating from |
24 |
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dissipation but only for Shap_funct=2, active when addFrictionHeating=T. |
25 |
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o model/src: |
26 |
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- move AddMass common block from DYNVARS.h to FFIELDS.h; allow to read-in |
27 |
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time-constant addMass field from file (addMassFile); |
28 |
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- support for heating due to friction (and Kinetic Energy dissipation): |
29 |
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add option, run-time switch and 3-D field array + support code ; each pkg |
30 |
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or S/R can add heating contribution (if there is a sink of KE); the sum is |
31 |
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accounted for as a Temperature tendency term (EXTERNAL_FORCING_T). |
32 |
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o pkg/seaice: |
33 |
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- complete merge of ITD code into seaice_growth.F |
34 |
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from MITgcm_contrib/torge/itd/code/ |
35 |
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no verification so far, but Torge Martin tested |
36 |
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"1-D test case and Beaufort set up; |
37 |
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deliver okay results after 1 model year." |
38 |
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- complete merge of SEAICE_SIZE.h into all relevant routines |
39 |
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- move computation of eta at Z-points into calc_viscosities |
40 |
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+ introduce global field etaZ |
41 |
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+ add different methods for computing etaZ, for now the old |
42 |
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method (simple averages of eta to Z-points) is hardwired |
43 |
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+ replace etaMeanZ by etaZ in seaice_lsr, seaice_calc_residual, |
44 |
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seaice_preconditioner |
45 |
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- simplify computations for SEAICE_ZETA_SMOOTHREG |
46 |
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- seaice_preconditioner: |
47 |
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+ replace one remaining press by pressLoc (mistake) |
48 |
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+ adjust printing of residuals |
49 |
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- improve I/O of diagnostics of JFNK in seaice_jfnk.F: |
50 |
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+ add (SEAICE.h) and rename some counters (initiliased in |
51 |
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seaice_init_fixed.F) |
52 |
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+ add _BEGIN/END_MASTER (myThid) around print statements |
53 |
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+ print total number of iterations and failures over SEAICE_monFreq |
54 |
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interval to STDOUT |
55 |
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- move control over output-messages by fgmres to seaice_jfnk to save |
56 |
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some operations |
57 |
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- move resetting initial guess for fgmres outside of seaice_fgmres_driver |
58 |
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in order to make restarts with sol .ne. zero (fgmres with restarts) |
59 |
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(seaice_jfnk.F, seaice_fgmres.F) |
60 |
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- seaice_calc_l/rhs.F: replace maskW/S by maskInW/S; this fixes |
61 |
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a serious convergence problem when open boundaries are involved |
62 |
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o pkg/ggl90: fix computation of control volumes for the case of |
63 |
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ALLOW_GGL90_HORIZDIFF (probably not used very often): move control volumes |
64 |
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up half a grid cell from C-centered to W-centered (pointed out by C. Eden) |
65 |
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o pkg/seaice: simplify seaice_evp by avoiding use of extra fields u/vIceC |
66 |
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o pkg/autodiff |
67 |
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- Add inAdMode switch for SEAICEuseDYNAMICS: |
68 |
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SEAICEuseDYNAMICSinAdMode |
69 |
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(extend logic in ADAUTODIFF_INADMODE_SET) |
70 |
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o pkg/seaice |
71 |
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- Step 1 of merging ice-thickness distribution (ITD) code from |
72 |
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MITgcm_contrib/torge/itd/ (author: Torge Martin) |
73 |
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The code implements concept laid out in Thorndike et al. (1975); |
74 |
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code is enabled via CPP flag SEAICE_ITD |
75 |
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nITD (in SEAICE_SIZE.h) defines number of ice thickness categories; |
76 |
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code is not complete yet!! |
77 |
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- SEAICE_SIZE.h now included in almost all seaice routines |
78 |
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o verification (using seaice): |
79 |
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- switch back seaice-dynamics (+ lower SOLV_MAX_ITERS) in ADM exp. |
80 |
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global_ocean.cs32x15.seaice ; update results. |
81 |
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- compile B-grid dynamics in FW test exp 1D_ocean_ice_column ; |
82 |
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- compile C-grid dynamics with #define SEAICE_ALLOW_JFNK in FW test exp |
83 |
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offline_exf_seaice (previously compiling B-grid). |
84 |
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o pkg/exf: |
85 |
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- fix some STOP conditions in exf_check.F (from Aug 28, modifs did not allow |
86 |
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to specify neither just 1 comp of wind or wind-stress, nor no surface momentum |
87 |
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forcing): just replace CPP option ALLOW_ATM_WIND with run-time param useAtmWind. |
88 |
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o pkg/layers (adjust changes from Sept 19): |
89 |
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- do snap-shot output and fill diagnostics from inside iLa loop (layers_calc.F) |
90 |
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this allows to remove "layers_maxNum" dimension from all layers arrays. |
91 |
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o pkg/layers (adjust changes from Sept 19): |
92 |
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- remove ALLOW_LAYERS_OUTPUT ; fix snap-shot and time-ave output ; |
93 |
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- snap-shot extended to all type of layers (not just the 1rst type); |
94 |
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- remove layers variables when corresponding CPP option is undef. |
95 |
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o pkg/layers: |
96 |
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- rename pkg/layers variable and add new output (layer exist & un-weighted |
97 |
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velocity in layer) |
98 |
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o pkg/seaice: |
99 |
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- simplify (?) ocean-drag coefficent computations by using |
100 |
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the same routine in all three solvers (saves some code lines) |
101 |
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- remove global fields DRAGA and DRAGS from C-grid code and |
102 |
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declare them locally in lsr.F (the only place where they are |
103 |
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still used) |
104 |
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- update AD output of lab_sea.evp (very sensitive anyway). |
105 |
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o pkg/seaice: add Jacobian-free Newton Krylov solver for ice dynamics |
106 |
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(Lemieux et al. 2010, 2012). Turn on with the usual SEAICE_ALLOW_JFNK |
107 |
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and SEAICEuseJFNK=.true. A few things to note: |
108 |
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- involves a FGMRES, that is parallel but very inefficient, |
109 |
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because of many scalar products (global sums) in the Gram-Schmidt |
110 |
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orthogonalization method. Needs to be replaced. Original code |
111 |
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from J.-F. Lemieux |
112 |
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- preconditioner for FGMRES is a stripped down version of LSOR |
113 |
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- SOLV_MAX_ITERS is now used for LSOR as a solver and as a |
114 |
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preconditioner. For the preconditioner, the default is set to 10. |
115 |
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- Jacobian times vector is computed with finite differences |
116 |
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- marginally related to JFNK-solver: add a smooth regularization for |
117 |
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zeta with tanh that will improve convergence (Lemieux and Tremblay, |
118 |
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2009) for any implicit solver (not implemented for EVP because EVP |
119 |
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does not need this regularization in the first place). Define |
120 |
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SEAICE_ZETA_SMOOTHREG in SEAICE_OPTIONS.h to use. |
121 |
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o eesupp/src: |
122 |
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- check in genmake2 that intrinsic S/R flush is available. |
123 |
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- add S/R to flush IO unit (if intrinsic S/R flush is available) |
124 |
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- flush standard & error msg unit before MPI termination |
125 |
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- if debugMode, flush IO unit after printing msg |
126 |
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o pkg/ctrl: |
127 |
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- ctrl_unpack.F, ALLOW_GENARR3D_CONTROL code: fix missing argument in call |
128 |
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to ctrl_set_unpack_xyz. |
129 |
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|
130 |
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checkpoint64 (2012/10/09) |
131 |
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o pkg/shelfice |
132 |
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- in mom_fluxform.F, mom_vecinv.F: |
133 |
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CALL SHELFICE_V_DRAG(bi,bj,k,vFld,KE,KappaRU,vF,myThid) |
134 |
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Bug fix KappaRU -> KappaRV |
135 |
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does not change verification/isomip but may change other setups |
136 |
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(presumably constant KappaRU=KappaRV) |
137 |
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- fix diagnostics SHIU/Vdrag (thanks to Tom Millgate) |
138 |
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o pkg/obcs: |
139 |
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- fixed some indexing bugs in obcs_seaice_sponge.F |
140 |
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- added obcs relaxation subroutines for HSALT and HSNOW |
141 |
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- changes verification/seaice_obcs/results/obcs_seaice_sponge.F |
142 |
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o pkg/seaice: |
143 |
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- add "multicategory" parameterization for snow in analogy to ice, |
144 |
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default is off for now. |
145 |
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o pkg/obcs: |
146 |
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- added obcs_seaice_sponge.F for obcs relaxation of seaice variables; |
147 |
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see verification/seaice_obcs/input.seaiceSponge for example application. |
148 |
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- remove local commom bloc "OBCS_GLOBAL" in obcs_readparms.F and do all the OB |
149 |
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index setting by master-thread. This fix multi-threads Pb in previous modifs. |
150 |
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o pkg/layers : |
151 |
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- add diagnostics to pkg/layers |
152 |
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- move the meat of pkg/layers from layers_calc.F to layers_fluxcalc.F |
153 |
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(from R.Tulloch). Layers_calc.F now calls layers_fluxcalc.F accordingly. |
154 |
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o pkg/generic_advdiff/gad_implicit_r.F : |
155 |
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- fix ADVr diagnostics in case of both implicit vertical advection and diffusion. |
156 |
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o pkg/seaice/seaice_growth.F: |
157 |
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- fix SItflux diagnostics in virtual salt flux + balanceEmpmr case. |
158 |
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o pkg/obcs: |
159 |
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- change default setting of OBCS_UVICE_OLD from defined to undef; |
160 |
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- use new parameter OB_indexNone for null index value (instead of hard-coded 0) |
161 |
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in all pkg/obcs code and in other pkgs; remove k loop in obcs_check_depths.F; |
162 |
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- pass OB_indexNone as (new) argument to S/R CTRL_MASK_SET_[X,Y]Z; |
163 |
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- change OB null index value (OB_indexNone) to -99 ; this fix the problem |
164 |
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with Southern & Western OB at a tile edge (at least in a simple set-up). |
165 |
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o pkg/obcs: |
166 |
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- change settings of OB index in case OB coincides with tile edge (shared by |
167 |
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2 tiles), so that common OB location is registered by both tiles (instead of |
168 |
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only 1). However, for Southern and Western OB, index value = 0 is not |
169 |
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recognized as valid OB index (=default null value) and needs to be fixed. |
170 |
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- modify accordingly OBCS_BALANCE_FLOW and OBCS_MONITOR (avoid double counting) |
171 |
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- new parameter "OB_indexNone" for null index value (for now, still zero) |
172 |
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to replace hard-coded null index value of zero. |
173 |
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o pkg/exch2: |
174 |
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- improve W2_USE_E2_SAFEMODE (faster) and W2_E2_DEBUG_ON: |
175 |
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always check buffer-size (but outside the loop); move checking for valid |
176 |
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index from W2_USE_E2_SAFEMODE to W2_E2_DEBUG_ON; in W2_E2_DEBUG_ON, |
177 |
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print each tile and point connection only if |W2_printMsg|>= 2 and 3. |
178 |
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o pkg/ctrl (pack & unpack): |
179 |
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- in ctrl_pack.F & ctrl_unpack.F, use the same local file-name variable |
180 |
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(locally defined) for different variables (+ remove the variable-specific |
181 |
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file name in CTRL_GENARR.h). For now, only implemented for GENARR2/3D_CONTROL |
182 |
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(to be extended to other local file names in ctrl.h). |
183 |
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o pkg/flt: |
184 |
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- add a FLT_Iter0 option (similar to PTRACERS_Iter0). |
185 |
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o pkg/mdsio: |
186 |
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- fix missing STOP in mdsio_readvec_loc.F (case ioUnit=0) when file is missing |
187 |
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o tools/genmake2: |
188 |
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- add similar dependences for target EXE_AD & EXE_FTL as we have for EXECUTABLE |
189 |
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(added by Alistair in version 1.51 for building without make depend); |
190 |
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- remove Header files list (H_SRC_FILES) from the dependence of targets |
191 |
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ad_input_code.f & ftl_input_code.f (not clear why it was added in the first |
192 |
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place in version 1.23): this save going through staf when unrelated header |
193 |
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file has been modified. |
194 |
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Note: for an intermediate target (e.g., ad_input_code.f or adtaf) without |
195 |
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"make depend" step, still need to do "make links" before "make adtaf". |
196 |
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o eesupp/src (+ few pkg src files) & genmake2: |
197 |
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- finish to remove ALWAYS_USE_MPI in source code that TAF does not see; |
198 |
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- no longer set ALWAYS_USE_MPI in Makefile (was done by genmake2). |
199 |
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- improve genmake2 checking for ALLOW_${PKG} in CPP_OPTIONS.h files (distinguish |
200 |
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upper/lower case ; account for space between "#" and undef/define) |
201 |
|
o pkg/flt (with exch2): |
202 |
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- cleaning: fix so that it compiles; move remaining MPI calls out of flt_exch2.F; |
203 |
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- simplify threads synchronisation; fix (many issues) multi-threaded with MPI. |
204 |
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|
205 |
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checkpoint63s (2012/09/05) |
206 |
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o pkg/ecco: |
207 |
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- remove #ifdef ALLOW_SMOOTH_CORREL3D brackets. |
208 |
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- add more relevant #ifdef ALLOW_SMOOTH ones. |
209 |
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- sort out useAtmWind, useSMOOTH, ctrlSmoothCorrel2D. |
210 |
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o pkg/ctrl: |
211 |
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- CTRL_OPTIONS.h : document CPPs related to smoothing; ALLOW_SMOOTH_CORREL2D/3D, |
212 |
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ALLOW_CTRL_SMOOTH, ALLOW_SMOOTH_CTRL2D, ALLOW_SMOOTH_CTRL3D. |
213 |
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- ctrl.h : document run time params doInitXX, doMainPack, doMainUnpack, doPackDiag, |
214 |
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doSinglePrecTapelev (audodiff param!), ctrlSmoothCorrel2D (new) and |
215 |
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ctrlSmoothCorrel3D (new). |
216 |
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The added ctrlSmoothCorrel2D/3D replace the old ALLOW_SMOOTH_CORREL2D/3D CPP. |
217 |
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- ctrl_readparms.F : initialise ctrlSmoothCorrel2D/3D and read from namelist. |
218 |
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- ctrl_init.F ctrl_pack.F ctrl_unpack.F : switch off ustress/vstress |
219 |
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controls when useAtmWind, and vice versa. |
220 |
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- ctrl_map_ini_ecco.F : UVEL0, VVEL0, edtaux, edtauy cannot be smoothed as tracers. |
221 |
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- ctrl_get_gen.F : replace #ifdef ALLOW_SMOOTH_CORREL2D with |
222 |
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#ifdef ALLOW_SMOOTH, IF ctrlSmoothCorrel2D, IF useSMOOTH. |
223 |
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- ctrl_map_ini_gen.F : replace #ifdef ALLOW_SMOOTH_CORREL3D with |
224 |
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#ifdef ALLOW_SMOOTH, IF ctrlSmoothCorrel3D, IF useSMOOTH. |
225 |
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- ctrl_set_pack_xy[z].F, ctrl_set_unpack_xy[z].F: |
226 |
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replace ALLOW_SMOOTH_CORREL2D/3D brackets with ctrlSmoothCorrel2D/3D. |
227 |
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o pkg/smooth: |
228 |
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- remove un-necessary includes. |
229 |
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- remove ALLOW_SMOOTH*D and ALLOW_SMOOTH_CORREL*D brakets. |
230 |
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Those CPP options were never defined, and not necessary. |
231 |
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o model/src: |
232 |
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- fix CPP brackets in ini_mixing.F (GM_background_K belongs to gmredi). |
233 |
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- standard treatment of useSMOOTH. |
234 |
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o pkg/autodiff: |
235 |
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- add LOGICAL useGGL90inAdMode, useGGL90inFwdMode, useSALT_PLUMEinAdMode, |
236 |
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useSALT_PLUMEInFwdMode allowing to switch off ggl90 and salt_plume adjoint. |
237 |
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o pkg/exch2: |
238 |
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- add "if usingMPI" where it was missing (in exch2_rx?_cube*.template) |
239 |
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+ start to remove ALWAYS_USE_MPI in source code that TAF does not see. |
240 |
|
- make new S/R W2_MAP_PROCS out of w2_eeboot.F to setup exch2 CommonFlag |
241 |
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and tiles to process mapping. |
242 |
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- re-arrange 3 header files (W2_EXCH2_PARAMS.h, _BUFFER.h & _TOPOLOGY.h) |
243 |
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moving /EXCH2_FILLVAL_RX/ & /W2_EXCH2_COMMFLAG/ to W2_EXCH2_TOPOLOGY.h; |
244 |
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rename "exch2_tProc" to "W2_tileProc" and move seting of e2FillValue_RX |
245 |
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from w2_eeboot.F to w2_readparms.F. |
246 |
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o eesupp/src: |
247 |
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- set exchNeedsMemsync & exchUsesBarrier according to "usingMPI" (instead of |
248 |
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ALWAYS_USE_MPI) + moved from ini_communication_patterns.F to eeset_parms.F; |
249 |
|
also move setting of exchCollectStatistics from exch_init.F to eeset_parms.F |
250 |
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- in eedie.F and all_proc_die.F, always call MPI_FINALIZE when ALLOW_USE_MPI |
251 |
|
is defined (remove condition on usingMPI) to match cases where MPI_INIT |
252 |
|
has been called. |
253 |
|
- fix bug I put in previous modif of exch_sm_3d_rx.template (not much used); |
254 |
|
- change default (non-MPI) value of myPid (from 1 to 0) to match MPI settings |
255 |
|
(so that on 1 proc, get same myPid independently of usingMPI) |
256 |
|
- add a stop if multi-procs but usingMPI=F ; stop also if usingMPI=T and |
257 |
|
useCubedSphereExchange with EXCH-1 (safer). |
258 |
|
- add "if usingMPI" where it was missing (+ start to remove ALWAYS_USE_MPI). |
259 |
|
o pkg/ggl90: |
260 |
|
- fix bug in filling corner mask array "mskCor" (FILL_CS_CORNER_TR_RL call) |
261 |
|
used in ALLOW_GGL90_SMOOTH code. |
262 |
|
o pkg/flt: |
263 |
|
- fix typo in FLT_WITHOUT_Y_PERIODICITY (the effect was to ignore stopping |
264 |
|
floats at the Southern end of the domain). |
265 |
|
o eesupp/inc: |
266 |
|
- add a list of CPP-options which can be set by Makefile (DEF_IN_MAKEFILE.h); |
267 |
|
but not used (and not to be used) anywhere, just for documentation. |
268 |
|
o pkg/autodiff, exf, ptracers & seaice (AD & TL output): |
269 |
|
- comment out the very nasty "writeBinaryPrec = writeStatePrec" line, since: |
270 |
|
a) can damage previously written records in any other multi-record files. |
271 |
|
b) if needed, can easily do it cleanly, by calling S/R WRITE_REC_3D_RL/S. |
272 |
|
o tools/genmake2: |
273 |
|
- define variable MAKE within Makefile and use it in place of 'make'; |
274 |
|
- update AD_CONFIG.h (if needed) before building any of the executable |
275 |
|
(forward, adjoint or tangent-lin); this involves a 2nd invocation of make; |
276 |
|
and add the usual #ifndef/#define AD_CONFIG_H in AD_CONFIG.h; |
277 |
|
- always print usual warning comment 'this file is automatically generated' |
278 |
|
from script convert_cpp_cmd2defines (+ remove this warning from genmake2). |
279 |
|
o pkg/cheapaml: |
280 |
|
- updated to correspond to the code used in accepted paper (Nico Wienders). |
281 |
|
o pkg/exf: |
282 |
|
added run time switch useAtmWind to replace ALLOW_ATM_WIND cpp switch. |
283 |
|
ALLOW_ATM_WIND now just sets the useAtmWind default (see exf_readparms.F) |
284 |
|
and force defines ALLOW_BULKFORMULAE (EXF_OPTIONS.h). |
285 |
|
o pkg/exf, autodiff, ctrl, ecco and seaice: |
286 |
|
remove ALLOW_ATM_WIND brackets, or replace them with useAtmWind ones. |
287 |
|
o pkg/ctrl, ecco: |
288 |
|
allow to compile both ALLOW_U/VSTRESS_CONTROL and ALLOW_U/VWIND_CONTROL. |
289 |
|
Depending on useAtmWind, one is inactive, and the other is active (see |
290 |
|
exf_getffields.F/exf_getsurfacefluxes.F). |
291 |
|
o tools/genmake2: |
292 |
|
- improve error msg when failing in 2nd test of check_for_broken_Ff |
293 |
|
- fix option '-makefile' short-name (-mf according to genmake2 -help) |
294 |
|
- source local config file "genmake_local" just after processing the genmake2 |
295 |
|
command arguments (previously done before processing arg). |
296 |
|
o pkg/grdchk: |
297 |
|
- add a call to TURNOFF_MODEL_IO for Tangent-Linear run (in this case, call |
298 |
|
to this routine from cost_final has been dropped in g_cost_final) |
299 |
|
- improve printed information (more explicit msg, no longer using "print *," |
300 |
|
fix fcpertminus printed value). |
301 |
|
o model/src: |
302 |
|
- move call to COST_INIT_VARIA out of packages_init_variables.F directly |
303 |
|
into initialise_varia.F (just after calling PACKAGES_INIT_VARIABLES): |
304 |
|
this prevents getting cost-funct reset in adinitialise_varia recomputations. |
305 |
|
o pkg/dic: |
306 |
|
- move initialisation of "freefe" array from from dic_biotic_forcing.F to |
307 |
|
fe_chem.F: this prevents TAF from dropping this initialisation in TLM code. |
308 |
|
o pkg/grdchk: |
309 |
|
- grdchk_main.F : added CALL GLOBAL_SUM_INT( ierr , myThid ) |
310 |
|
- grdchk_getadxx.F etc. : omit I/O if ierr.EQ.0 |
311 |
|
o pkg/autodiff/ctrl/grdchk : |
312 |
|
- attempt to sort out what works and what does not, |
313 |
|
with regard to I/O, and to warn/stop accordingly. |
314 |
|
o pkg/grdchk: |
315 |
|
- attempt to fix grdchk in the case of useSingleCpuIO. |
316 |
|
- "if ( myProcId .EQ. grdchkwhichproc .AND. ierr .EQ. 0 )" |
317 |
|
statements were moved from grdchk_main.F and into |
318 |
|
grdchk_getadxx.F grdchk_getxx.F grdchk_setxx.F. |
319 |
|
- a global sum is applied to record numbers icvrec/layer |
320 |
|
out of grdchk_loc so that they be passed to I/O routines. |
321 |
|
o pkg/smooth: |
322 |
|
- fix recomputation that appeared with nlfs : use smooth_recip_hFacC, |
323 |
|
smooth_hFacW, smooth_hFacS (copied at init_fixed) in 3d case. |
324 |
|
o verification/testreport: |
325 |
|
- add option '-tlm' for Tangent-Linear test (-adm,-oad,-tlm are all exclusive); |
326 |
|
- can also use compressed (gzip) reference output file; |
327 |
|
- change format (in pkg/grdchk) of TLM output (+ add forward gradient) |
328 |
|
to be easier to collect by testreport. |
329 |
|
- update existing TLM output (half out-of-date by more than 3 yrs). |
330 |
|
- report NETCDF & LAPACK settings (from genmake2) in output dir. |
331 |
|
- report run-time in each individual summary (previously only for AD test); |
332 |
|
for TLM test, add also TAF version. |
333 |
|
- add daily TLM test on (old) aces cluster + weekly test on baudelaire. |
334 |
|
|
335 |
|
checkpoint63r (2012/08/15) |
336 |
|
o tools/genmake2: |
337 |
|
- fix Makefile for target ftlall (+ update files to clean after make ftlall) |
338 |
|
o pkg/ecco/ecco_cost_final.F : |
339 |
|
- fix fc print statements (to stdout and costfunction0000) so |
340 |
|
that the printed value is always after the global sum. |
341 |
|
o pkg/seaice/seaice_dynsolver.F : |
342 |
|
- fix ice strength assymptote at SEAICE_area_max<1 |
343 |
|
(no change for the standard case of SEAICE_area_max=1) |
344 |
|
o some cleaning: |
345 |
|
- pkg source files: ensure that all *.F files from each pkg included the |
346 |
|
corresponding ${PKG}_OPTIONS.h file (except stand-alone src file which |
347 |
|
only includes CPP_EEOPTIONS.h); fix S/R CTRL_SMOOTH ; update AD experiment |
348 |
|
code_ad/*.F src files; add new option-file in pkg/admtlm + corresponding |
349 |
|
includes; |
350 |
|
- model/src: add PACKAGES_CONFIG.h wherever ALLOW_AUTODIFF[_TAMC] is used. |
351 |
|
- ALLOW_DIFFKR_CONTROL: add a stop in S/R CTRL_CHECK in case ALLOW_3D_DIFFKR |
352 |
|
is undef; also define /DYNVARS_DIFFKR/ common block in DYNVARS.h when |
353 |
|
ALLOW_DIFFKR_CONTROL is defined, to allow to compile and reach this stop. |
354 |
|
- update option-file CPP_OPTIONS.h of all AD experiments: |
355 |
|
* no longer include PACKAGES_CONFIG.h ; |
356 |
|
* includes ECCO_CPPOPTIONS.h if PACKAGES_CONFIG.h has been included ; |
357 |
|
* def/undef ALLOW_3D_DIFFKR independently of ALLOW_DIFFKR_CONTROL (before |
358 |
|
including ECCO_CPPOPTIONS.h). |
359 |
|
o pkg/cost, pkg/ctrl, pkg/ecco option-file: |
360 |
|
- clean-up and split content of old pkg/ecco/ECCO_CPPOPTIONS.h file into |
361 |
|
separated pkg option-file (done according to old doc from ECCO_CPPOPTIONS.h, |
362 |
|
not necessary accurate). |
363 |
|
- add a template for option-file ECCO_CPPOPTIONS.h, mostly empty, in |
364 |
|
pkg/autodiff, i.e., the 1rst pkg to compile for adjoint built, with lines to |
365 |
|
deliberately break compilation (a remainder that it needs to be customized) |
366 |
|
- in pkg/ecco, includes ECCO_OPTIONS.h instead of COST_OPTIONS.h |
367 |
|
- rename COST_CPPOPTIONS.h to COST_OPTIONS.h |
368 |
|
- rename CTRL_CPPOPTIONS.h to CTRL_OPTIONS.h |
369 |
|
o tools/genamke2: |
370 |
|
- check for lapack. |
371 |
|
o pkg/cost and pkg/ecco : attempt to sort out some of the limiting intricacies. |
372 |
|
- pkg/cost.cost_final.F : allow for use of pkg/ecco and pkg/cost cost functions |
373 |
|
jointly. The exclusive ifdefs were removed, to add costs terms (when defined) |
374 |
|
from both packages. |
375 |
|
- the fc global sum in pkg/ecco/ecco_cost_final.F was removed accordingly. |
376 |
|
- for objf_atl we use either the pkg/ecco or the pkg/cost term depending on CPPs. |
377 |
|
- pkg/ecco and model/src : add CPP brackets around pkg/cost and pkg/ctrl includes |
378 |
|
of "CTRL_SIZE.h" "ctrl.h" "ctrl_dummy.h" "optim.h" / "cost.h" accordingly. |
379 |
|
o pkg/cost : add comments to explain special and/or untested setups. |
380 |
|
o pkg/exf: |
381 |
|
- use EXF_OPTIONS.h to set pkg/exf options except if done in ECCO_CPPOPTIONS.h |
382 |
|
(previously, ALLOW_AUTODIFF_TAMC was controling this switch). |
383 |
|
o verification/*/code_ad: |
384 |
|
mimimal cleaning of AD experiments ECCO_CPPOPTIONS.h option-file: |
385 |
|
- reccord when this file is included (define ECCO_CPPOPTIONS_H) |
386 |
|
- remove the most obvious obsolete features (e.g., #define ALLOW_COST not |
387 |
|
allowed since Oct 2003 in any option-file except in PACKAGES_CONFIG.h) |
388 |
|
o pkg/seaice : |
389 |
|
- added possibility to change ice strength/PRESS0 relationship to |
390 |
|
HEFF, according to the following run time parameters |
391 |
|
SEAICEpresPow0 :: HEFF exponent for ice strength below SEAICEpresH0 (integer, >0) |
392 |
|
SEAICEpresPow1 :: HEFF exponent for ice strength above SEAICEpresH0 (integer, >0) |
393 |
|
SEAICEpresH0 :: HEFF threshold for ice strength (m) |
394 |
|
o pkg/ggl90 : |
395 |
|
- added run time flag mxlSurfFlag to include the code that ensure |
396 |
|
mixing between first and second level (previously included as a comment) |
397 |
o verification/1D_ocean_ice_column/input_ad/data.autodiff : |
o verification/1D_ocean_ice_column/input_ad/data.autodiff : |
398 |
- add test of newly added dumpAdByRec=T option where |
- add test of newly added dumpAdByRec=T option where |
399 |
we write all records to one file per variable. |
we write all records to one file per variable. |
400 |
o verification/global_ocean.cs32x15/code_ad/CPP_OPTIONS.h : |
o verification/global_ocean.cs32x15/code_ad/CPP_OPTIONS.h : |
401 |
- switch to #define ALLOW_BALANCE_RELAX and ALLOW_BALANCE_FLUXES |
- switch to #define ALLOW_BALANCE_RELAX and ALLOW_BALANCE_FLUXES |
402 |
to check that this code is ok with taf and compiles in adjoint. |
to check that this code is ok with taf and compiles in adjoint. |
403 |
o pkg/autodiff : |
o pkg/autodiff : |
404 |
- added run time param dumpAdByRec : ad dump format switch. |
- added run time param dumpAdByRec : ad dump format switch. |
405 |
If true then write all records to one file per variable. |
If true then write all records to one file per variable. |
406 |
Else write one file per record (remains the default). |
Else write one file per record (remains the default). |
407 |
- revise seaice_ad_dump.F and exf_adjoint_snapshots_ad.F accordingly. |
- revise seaice_ad_dump.F and exf_adjoint_snapshots_ad.F accordingly. |
408 |
o pkg/seaice: |
o pkg/seaice: |
409 |
- Added SEAICEuseTILT run time switch : if set to |
- Added SEAICEuseTILT run time switch : if set to |
410 |
false then omit the tilt term in seaice dynamics. |
false then omit the tilt term in seaice dynamics. |
411 |
- Fix free drift calculation. |
- Fix free drift calculation. |
412 |
o pkg/shelfice: |
o pkg/shelfice: |
413 |
When initializing SHELFICEDragQuadratic, set default to be |
When initializing SHELFICEDragQuadratic, set default to be |
414 |
consistent with shiCdrag in case SHELFICEuseGammaFrict is used, |
consistent with shiCdrag in case SHELFICEuseGammaFrict is used, |
415 |
but retain option to set it independently |
but retain option to set it independently |
416 |
(inconsistenty spotted by Veronique Dansereau) |
(inconsistenty spotted by Veronique Dansereau) |
417 |
o eesupp/inc: |
o eesupp/inc: |